Trimin1|347306|estExt_Genemark1.C_Ctg_100087 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|347306
Unique Name	Trimin1\|347306\|estExt_Genemark1.C_Ctg_100087
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	1589

Homology

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BLAST of jgi.p|Trimin1|347306 vs. uniprot
Match: A0A835ZGQ8_9STRA (SNF2-rel_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGQ8_9STRA)

HSP 1 Score: 1881 bits (4872), Expect = 0.000e+0
Identity = 1588/1588 (100.00%), Postives = 1588/1588 (100.00%), Query Frame = 0

Query:    1 MSPSAASRHQHLDSRKPRLLEDSGRGVGSSRPQQQQEECRAVLTPRSGIPARRANDSTPLSHRASXXXXXXXPYHSITAAXXXXXXXXXXXXXXXXXXXXXXXXXXXPGSSTAALHVPAPSSLDSSLENVLERSRLNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQQRSAGRWQQCXXXXXXXXXXXXXXXXXXXXXXXXXXSACGNTPLRASAERRKKGAGARYMRRDGSDSSADPRTRTSAXXXXXXXXXXXSGSPMRQQGSGGAHVETPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLLRQWSGHVSPQPALLPXXXXXXXQKLRNPYVRAKHCQLHEQGLMEAHGRIVGSGGGGSNVSGSXXXXXDRGTXXXXXVGXXXXXXXXXXXXSSGGGSXXXXXXXXXXXXXXXXXXXXXXXXXXGIGSSGCGRSSVQQQALSHCASSSRANGTPAAAAAIRRAPRSGSGAARAAVIAEVASCRHSGGSXXXXXDSDGGMGLDIDATVMFSDSASSIGAAPGXXXXXXXXXXAQSVSSVCSALRRTHLVAPTGSTPSNXXXXXXXGSMVGKSGSSRGKGXXXXXXXXXXXXAFSATRAAXXXXXXXQPSLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGAAVPPAASGSQHSLGARAGAGSGSLRGRGGTARSGGGGVMPLRRSWSASSDXXXXXXXXXXXXXAPGRNGAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYASLRNGGCSPIASXXXXXXXXXXXXXXXVSFRGNCXXXXXXXXXXXAHVSLHNGSGSADDDADITRCCGVAPPANAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSDSMESPVIDMGTSWPTGWSRLGLAPGGGDAQNFGSDAAQSPPPYAYGSGADGSYDSDLTVDNGPEAYASSQAEPPLARAVLHGSSGSSGSSSGGRPALSVXXXXXXXXXXXXXXXXXXSHSQALDACWRGHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXNGVVFGPTRAAHLAHASPSARRNVDAGPQSAARAGSRINHVSYSPAASLGLGFEISPKVGSNAQTTFRSGFGAGGEVRITVSPGTRVRISPSARDGGAADEGAASQLCESMAGLSIRLEPQQRSARPAXXXXXXXXXXXXXEEIDESQITADNDRLPRDRPPYRPPVTCRVPNGSQARCAERGAGERNFNPSSNPTLFGNGGLELRRKAAAKRREPRGLQLTKCQQAAFDWMMQVEGEVVNGAGGSKRQWRLRGGIVSHLPHRDAVAAALAVLQREGNRLFDVSALSTTGXXXXXETIFHGGTLVIASKDTAEAWCTALERTALAVVRYAAAAKERRRIGVATLSEADVVVSTYDVLNXXXXXXXXXXAVHPAWQFSXXXXXXXXXXXXKSKEGPASCAVGPEEELDRRGQPVAIVGYERQMTPVSKLHCIRWHRVIADDAYLLASSAATARATAAXXXXXXXXXXXXXXXXXXXXXXXASALAASVRWCVMDHNDMSRVEYASARLRCLYGFVGVPPKVPMAQGPA 1588
            MSPSAASRHQHLDSRKPRLLEDSGRGVGSSRPQQQQEECRAVLTPRSGIPARRANDSTPLSHRASXXXXXXXPYHSITAAXXXXXXXXXXXXXXXXXXXXXXXXXXXPGSSTAALHVPAPSSLDSSLENVLERSRLNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQQRSAGRWQQCXXXXXXXXXXXXXXXXXXXXXXXXXXSACGNTPLRASAERRKKGAGARYMRRDGSDSSADPRTRTSAXXXXXXXXXXXSGSPMRQQGSGGAHVETPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLLRQWSGHVSPQPALLPXXXXXXXQKLRNPYVRAKHCQLHEQGLMEAHGRIVGSGGGGSNVSGSXXXXXDRGTXXXXXVGXXXXXXXXXXXXSSGGGSXXXXXXXXXXXXXXXXXXXXXXXXXXGIGSSGCGRSSVQQQALSHCASSSRANGTPAAAAAIRRAPRSGSGAARAAVIAEVASCRHSGGSXXXXXDSDGGMGLDIDATVMFSDSASSIGAAPGXXXXXXXXXXAQSVSSVCSALRRTHLVAPTGSTPSNXXXXXXXGSMVGKSGSSRGKGXXXXXXXXXXXXAFSATRAAXXXXXXXQPSLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGAAVPPAASGSQHSLGARAGAGSGSLRGRGGTARSGGGGVMPLRRSWSASSDXXXXXXXXXXXXXAPGRNGAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYASLRNGGCSPIASXXXXXXXXXXXXXXXVSFRGNCXXXXXXXXXXXAHVSLHNGSGSADDDADITRCCGVAPPANAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSDSMESPVIDMGTSWPTGWSRLGLAPGGGDAQNFGSDAAQSPPPYAYGSGADGSYDSDLTVDNGPEAYASSQAEPPLARAVLHGSSGSSGSSSGGRPALSVXXXXXXXXXXXXXXXXXXSHSQALDACWRGHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXNGVVFGPTRAAHLAHASPSARRNVDAGPQSAARAGSRINHVSYSPAASLGLGFEISPKVGSNAQTTFRSGFGAGGEVRITVSPGTRVRISPSARDGGAADEGAASQLCESMAGLSIRLEPQQRSARPAXXXXXXXXXXXXXEEIDESQITADNDRLPRDRPPYRPPVTCRVPNGSQARCAERGAGERNFNPSSNPTLFGNGGLELRRKAAAKRREPRGLQLTKCQQAAFDWMMQVEGEVVNGAGGSKRQWRLRGGIVSHLPHRDAVAAALAVLQREGNRLFDVSALSTTGXXXXXETIFHGGTLVIASKDTAEAWCTALERTALAVVRYAAAAKERRRIGVATLSEADVVVSTYDVLNXXXXXXXXXXAVHPAWQFSXXXXXXXXXXXXKSKEGPASCAVGPEEELDRRGQPVAIVGYERQMTPVSKLHCIRWHRVIADDAYLLASSAATARATAAXXXXXXXXXXXXXXXXXXXXXXXASALAASVRWCVMDHNDMSRVEYASARLRCLYGFVGVPPKVPMAQGPA
Sbjct:    1 MSPSAASRHQHLDSRKPRLLEDSGRGVGSSRPQQQQEECRAVLTPRSGIPARRANDSTPLSHRASXXXXXXXPYHSITAAXXXXXXXXXXXXXXXXXXXXXXXXXXXPGSSTAALHVPAPSSLDSSLENVLERSRLNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQQRSAGRWQQCXXXXXXXXXXXXXXXXXXXXXXXXXXSACGNTPLRASAERRKKGAGARYMRRDGSDSSADPRTRTSAXXXXXXXXXXXSGSPMRQQGSGGAHVETPGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLLRQWSGHVSPQPALLPXXXXXXXQKLRNPYVRAKHCQLHEQGLMEAHGRIVGSGGGGSNVSGSXXXXXDRGTXXXXXVGXXXXXXXXXXXXSSGGGSXXXXXXXXXXXXXXXXXXXXXXXXXXGIGSSGCGRSSVQQQALSHCASSSRANGTPAAAAAIRRAPRSGSGAARAAVIAEVASCRHSGGSXXXXXDSDGGMGLDIDATVMFSDSASSIGAAPGXXXXXXXXXXAQSVSSVCSALRRTHLVAPTGSTPSNXXXXXXXGSMVGKSGSSRGKGXXXXXXXXXXXXAFSATRAAXXXXXXXQPSLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNGAAVPPAASGSQHSLGARAGAGSGSLRGRGGTARSGGGGVMPLRRSWSASSDXXXXXXXXXXXXXAPGRNGAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYASLRNGGCSPIASXXXXXXXXXXXXXXXVSFRGNCXXXXXXXXXXXAHVSLHNGSGSADDDADITRCCGVAPPANAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSDSMESPVIDMGTSWPTGWSRLGLAPGGGDAQNFGSDAAQSPPPYAYGSGADGSYDSDLTVDNGPEAYASSQAEPPLARAVLHGSSGSSGSSSGGRPALSVXXXXXXXXXXXXXXXXXXSHSQALDACWRGHGGXXXXXXXXXXXXXXXXXXXXXXXXXXXNGVVFGPTRAAHLAHASPSARRNVDAGPQSAARAGSRINHVSYSPAASLGLGFEISPKVGSNAQTTFRSGFGAGGEVRITVSPGTRVRISPSARDGGAADEGAASQLCESMAGLSIRLEPQQRSARPAXXXXXXXXXXXXXEEIDESQITADNDRLPRDRPPYRPPVTCRVPNGSQARCAERGAGERNFNPSSNPTLFGNGGLELRRKAAAKRREPRGLQLTKCQQAAFDWMMQVEGEVVNGAGGSKRQWRLRGGIVSHLPHRDAVAAALAVLQREGNRLFDVSALSTTGXXXXXETIFHGGTLVIASKDTAEAWCTALERTALAVVRYAAAAKERRRIGVATLSEADVVVSTYDVLNXXXXXXXXXXAVHPAWQFSXXXXXXXXXXXXKSKEGPASCAVGPEEELDRRGQPVAIVGYERQMTPVSKLHCIRWHRVIADDAYLLASSAATARATAAXXXXXXXXXXXXXXXXXXXXXXXASALAASVRWCVMDHNDMSRVEYASARLRCLYGFVGVPPKVPMAQGPA 1588

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|347306 vs. uniprot

BLAST of jgi.p|Trimin1|347306 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZGQ8_9STRA	0.000e+0	100.00	SNF2-rel_dom domain-containing protein n=1 Tax=Tri...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000330	SNF2, N-terminal	PFAM	PF00176	SNF2-rel_dom	coord: 1361..1552 e-value: 4.0E-8 score: 32.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1199..1221
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 289..303
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 891..1000
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..466
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..155
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 547..621
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 690..744
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 896..910
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1070..1098
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 173..201
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 726..740
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 562..621
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1188..1221
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..247
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 446..466
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 345..359
None	No IPR available	PANTHER	PTHR45626:SF16	ATP-DEPENDENT HELICASE ULS1	coord: 179..1552
None	No IPR available	PANTHER	PTHR45626	TRANSCRIPTION TERMINATION FACTOR 2-RELATED	coord: 179..1552

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_10	contig	Contig_10:650228..659862 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|347306	mRNA_4297	Tribonema minus UTEX_B_3156	mRNA	Contig_10 650228..659862 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|347306|estExt_Genemark1.C_Ctg_100087 ID=Trimin1|347306|estExt_Genemark1.C_Ctg_100087|Name=jgi.p|Trimin1|347306|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1589bp
MSPSAASRHQHLDSRKPRLLEDSGRGVGSSRPQQQQEECRAVLTPRSGIP
ARRANDSTPLSHRASPLSHAAAPYHSITAAAAAAAIKRDGGAPYDSQHKA
AAPPPSSPGSSTAALHVPAPSSLDSSLENVLERSRLNAAAAALGGSSSSS
GGGGGSSAVRGLFSPPPPPSASGRKQRQQRSAGRWQQCSAAKAQQEQRST
EKAQQRSGEKVRQRSACGNTPLRASAERRKKGAGARYMRRDGSDSSADPR
TRTSASAARRRRQRPDSGSPMRQQGSGGAHVETPGSAAAARRRQQQQQQH
RISAEAGADGGGSDGGGGGGGDTDDGAGGAASMLLRQWSGHVSPQPALLP
PPPLLPPQKLRNPYVRAKHCQLHEQGLMEAHGRIVGSGGGGSNVSGSGGG
GADRGTSGSGGVGGSVGVGGSGGVGSSGGGSGGGGGGGGGGGGGDAESDS
SSSSSDGGIGSSGCGRSSVQQQALSHCASSSRANGTPAAAAAIRRAPRSG
SGAARAAVIAEVASCRHSGGSGGGGSDSDGGMGLDIDATVMFSDSASSIG
AAPGGSGGGGSGDDAQSVSSVCSALRRTHLVAPTGSTPSNGSGSGGGGSM
VGKSGSSRGKGGSSGDGGSSGSGAFSATRAAAAAAAVIQPSLASQQLQAA
ATAAAARPTSARKATANATAGGGSSLVMCNGAAVPPAASGSQHSLGARAG
AGSGSLRGRGGTARSGGGGVMPLRRSWSASSDSSSSPAAHSAHRAAPGRN
GAFAAAADGVCAAAAATRAAASPALSATSAGAAYASLRNGGCSPIASAAA
AAAAAAADGGACVSFRGNCGGGGGGARSAAAHVSLHNGSGSADDDADITR
CCGVAPPANAPAGAAARGRSGGGGSSCSGSGACVHNDGAGGSNGGGGGSD
SDSMESPVIDMGTSWPTGWSRLGLAPGGGDAQNFGSDAAQSPPPYAYGSG
ADGSYDSDLTVDNGPEAYASSQAEPPLARAVLHGSSGSSGSSSGGRPALS
VPAAAATGRAANGTAFNGASHSQALDACWRGHGGGGGGSGGGAGGGSGSG
GSGSGGCGGGGNGVVFGPTRAAHLAHASPSARRNVDAGPQSAARAGSRIN
HVSYSPAASLGLGFEISPKVGSNAQTTFRSGFGAGGEVRITVSPGTRVRI
SPSARDGGAADEGAASQLCESMAGLSIRLEPQQRSARPAAAAAWWQQRGS
DDEEIDESQITADNDRLPRDRPPYRPPVTCRVPNGSQARCAERGAGERNF
NPSSNPTLFGNGGLELRRKAAAKRREPRGLQLTKCQQAAFDWMMQVEGEV
VNGAGGSKRQWRLRGGIVSHLPHRDAVAAALAVLQREGNRLFDVSALSTT
GGGGGGETIFHGGTLVIASKDTAEAWCTALERTALAVVRYAAAAKERRRI
GVATLSEADVVVSTYDVLNIGVATLSEADAVHPAWQFSEADVVVSTYDVL
KSKEGPASCAVGPEEELDRRGQPVAIVGYERQMTPVSKLHCIRWHRVIAD
DAYLLASSAATARATAAWHRVIADDAYLLASSAATARATAASALAASVRW
CVMDHNDMSRVEYASARLRCLYGFVGVPPKVPMAQGPA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000330	SNF2_N