Trimin1|347261|estExt_Genemark1.C_Ctg_90168 (polypeptide) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|347261 vs. uniprot
Match: A0A835YJQ0_9STRA (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJQ0_9STRA) HSP 1 Score: 959 bits (2480), Expect = 0.000e+0 Identity = 739/739 (100.00%), Postives = 739/739 (100.00%), Query Frame = 0 Query: 1 MQDVVEERSLAGLCGWPLCRGPAEWAVKGKSRYRISLRAHEIYERVDSSKXXXXXXXXXFCSVNCQAITAALAASFPTDSPYTRAVALAHVADVQTSSGDAPGAAPAKTTAAKRARRRDSQAPHAADIRQKLEALSLADGGGALSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVSRGDAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRDGGAMEGITEQLQAVEISQGAEGAGEGGKAGAQAAPQAGEGKHVGGGSRGRPTAAQRKAKGALPPRPHRVADAVMKRAVARCRRGRSVPLTPRTAAAAXXXXXXXXXXXXXXXXXXXALVERXXXXXXXXXXXXXXXXXXXXXAPAAAQPMPLLQPAFRGLVEGHAPSPAFEATVSFSVAPREAPLGASTPPMASTKGPPEEGEGLEEGSTSGEAEEGDSDAPPQGDADDWDEEXXXXXXGSDADGPGGPWLDLDALHDKRAREEFRASLSSFITLWGALAEWVTPETRACLLRLRGDPAATSTSSALFSAEGQDAAVPLQRAPHAAAATLDGRHRAVSAQVHKHARATLLAQQGPFLLGWSARCSSGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSVAAAREVLAALLASFDYTCATPQLAREQWALLPLVLGGALLGGGRRERGSAAAQVSAVASAXXXXXXXXXXXXXXXXXXXXXXVTRSEYRLLCGVLEADACQL 739 MQDVVEERSLAGLCGWPLCRGPAEWAVKGKSRYRISLRAHEIYERVDSSKXXXXXXXXXFCSVNCQAITAALAASFPTDSPYTRAVALAHVADVQTSSGDAPGAAPAKTTAAKRARRRDSQAPHAADIRQKLEALSLADGGGALSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVSRGDAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRDGGAMEGITEQLQAVEISQGAEGAGEGGKAGAQAAPQAGEGKHVGGGSRGRPTAAQRKAKGALPPRPHRVADAVMKRAVARCRRGRSVPLTPRTAAAAXXXXXXXXXXXXXXXXXXXALVERXXXXXXXXXXXXXXXXXXXXXAPAAAQPMPLLQPAFRGLVEGHAPSPAFEATVSFSVAPREAPLGASTPPMASTKGPPEEGEGLEEGSTSGEAEEGDSDAPPQGDADDWDEEXXXXXXGSDADGPGGPWLDLDALHDKRAREEFRASLSSFITLWGALAEWVTPETRACLLRLRGDPAATSTSSALFSAEGQDAAVPLQRAPHAAAATLDGRHRAVSAQVHKHARATLLAQQGPFLLGWSARCSSGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSVAAAREVLAALLASFDYTCATPQLAREQWALLPLVLGGALLGGGRRERGSAAAQVSAVASAXXXXXXXXXXXXXXXXXXXXXXVTRSEYRLLCGVLEADACQL Sbjct: 1 MQDVVEERSLAGLCGWPLCRGPAEWAVKGKSRYRISLRAHEIYERVDSSKXXXXXXXXXFCSVNCQAITAALAASFPTDSPYTRAVALAHVADVQTSSGDAPGAAPAKTTAAKRARRRDSQAPHAADIRQKLEALSLADGGGALSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVSRGDAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRDGGAMEGITEQLQAVEISQGAEGAGEGGKAGAQAAPQAGEGKHVGGGSRGRPTAAQRKAKGALPPRPHRVADAVMKRAVARCRRGRSVPLTPRTAAAAXXXXXXXXXXXXXXXXXXXALVERXXXXXXXXXXXXXXXXXXXXXAPAAAQPMPLLQPAFRGLVEGHAPSPAFEATVSFSVAPREAPLGASTPPMASTKGPPEEGEGLEEGSTSGEAEEGDSDAPPQGDADDWDEEXXXXXXGSDADGPGGPWLDLDALHDKRAREEFRASLSSFITLWGALAEWVTPETRACLLRLRGDPAATSTSSALFSAEGQDAAVPLQRAPHAAAATLDGRHRAVSAQVHKHARATLLAQQGPFLLGWSARCSSGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSVAAAREVLAALLASFDYTCATPQLAREQWALLPLVLGGALLGGGRRERGSAAAQVSAVASAXXXXXXXXXXXXXXXXXXXXXXVTRSEYRLLCGVLEADACQL 739
BLAST of jgi.p|Trimin1|347261 vs. uniprot
Match: A0A8J5SLX5_ZIZPA (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5SLX5_ZIZPA) HSP 1 Score: 62.8 bits (151), Expect = 1.950e-6 Identity = 35/82 (42.68%), Postives = 45/82 (54.88%), Query Frame = 0 Query: 3 DVVEERSLAGLCGWPLCRGPA--EWAVKGKSRYRISLRAHEIYERVDSSKXXXXXXXXXFCSVNCQAITAALAASFPTDSPY 82 DVV ERS+A +CG+P C P E A K R+ ISLR H +Y+ ++ K FCS C +AA AAS P + PY Sbjct: 54 DVVTERSIADVCGYPACACPIPEEGARKEGPRFHISLREHRVYDLEEARK---------FCSERCLVASAAFAASLPLERPY 126
BLAST of jgi.p|Trimin1|347261 vs. uniprot
Match: A0A5A7QRG8_STRAF (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7QRG8_STRAF) HSP 1 Score: 59.3 bits (142), Expect = 3.440e-6 Identity = 29/80 (36.25%), Postives = 43/80 (53.75%), Query Frame = 0 Query: 2 QDVVEERSLAGLCGWPLCRGPAEWAVKGKSRYRISLRAHEIYERVDSSKXXXXXXXXXFCSVNCQAITAALAASFPTDSP 81 QDVV ER++AG+CG PLC P K RYR+SL+ H++Y+ ++ K +CS C + AA+ + P Sbjct: 42 QDVVTERTIAGICGHPLCTNPLPTERPRKGRYRVSLKEHKVYDLQETYK---------YCSTGCLINSRTFAATLKEERP 112
BLAST of jgi.p|Trimin1|347261 vs. uniprot
Match: A0A6P5XQU7_DURZI (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5XQU7_DURZI) HSP 1 Score: 60.1 bits (144), Expect = 1.130e-5 Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = 0 Query: 2 QDVVEERSLAGLCGWPLCRGPAEWAVKGKSRYRISLRAHEIYERVDSSKXXXXXXXXXFCSVNC 65 +DVV ERS++ +CG+PLCR P K RYRISL+ H +Y+ ++++ FCS +C Sbjct: 43 EDVVTERSISNICGYPLCRNPLPSEPLRKGRYRISLKEHRVYDLLETNM---------FCSADC 97
BLAST of jgi.p|Trimin1|347261 vs. uniprot
Match: A0A6P5XQN7_DURZI (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=4 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5XQN7_DURZI) HSP 1 Score: 60.1 bits (144), Expect = 1.360e-5 Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = 0 Query: 2 QDVVEERSLAGLCGWPLCRGPAEWAVKGKSRYRISLRAHEIYERVDSSKXXXXXXXXXFCSVNC 65 +DVV ERS++ +CG+PLCR P K RYRISL+ H +Y+ ++++ FCS +C Sbjct: 43 EDVVTERSISNICGYPLCRNPLPSEPLRKGRYRISLKEHRVYDLLETNM---------FCSADC 97
BLAST of jgi.p|Trimin1|347261 vs. uniprot
Match: A0A8B7BM07_PHODC (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B7BM07_PHODC) HSP 1 Score: 60.1 bits (144), Expect = 1.370e-5 Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 0 Query: 2 QDVVEERSLAGLCGWPLCRGPAEWAVKGKSRYRISLRAHEIYERVDSSKXXXXXXXXXFCSVNCQAITAALAASFPTD 79 +DVV ERS+A CG+PLC P V KSRYRISLR H++Y+ ++ K +CS C + A A S ++ Sbjct: 45 EDVVVERSIADHCGYPLCPNPLPQDVPRKSRYRISLREHKVYDLEETYK---------YCSPACVIASRAFAGSLSSE 113
BLAST of jgi.p|Trimin1|347261 vs. uniprot
Match: A0A0D3AXD9_BRAOL (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=6 Tax=Brassica TaxID=3705 RepID=A0A0D3AXD9_BRAOL) HSP 1 Score: 59.7 bits (143), Expect = 1.960e-5 Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 0 Query: 2 QDVVEERSLAGLCGWPLCRGPAEWAVKGKSRYRISLRAHEIYERVDSSKXXXXXXXXXFCSVNC 65 +DVV ER++A LCG+PLCR P V + +YR+SL+ H +Y+ +S K FCS C Sbjct: 67 EDVVTERTIAKLCGYPLCRSPLPSDVSRRGKYRVSLKEHRVYDVRESQK---------FCSGEC 121
BLAST of jgi.p|Trimin1|347261 vs. uniprot
Match: A0A7S0N1B1_9CHLO (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N1B1_9CHLO) HSP 1 Score: 57.4 bits (137), Expect = 3.050e-5 Identity = 27/67 (40.30%), Postives = 37/67 (55.22%), Query Frame = 0 Query: 2 QDVVEERSLAGLCGWPLCRGPAEWAVKGKSRYRISLRAHEIYERVDSSKXXXXXXXXXFCSVNCQAI 68 ++V EERS+AG+CG PLC P V +Y+ISL+ H++YE S+ FCS C I Sbjct: 22 KEVFEERSIAGVCGSPLCGNPVARLVSSHGKYKISLQHHKVYEVPQHSR---------FCSTTCDVI 79
BLAST of jgi.p|Trimin1|347261 vs. uniprot
Match: UPI00125D50B0 (putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125D50B0) HSP 1 Score: 58.5 bits (140), Expect = 3.990e-5 Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 0 Query: 2 QDVVEERSLAGLCGWPLCRG--PAEWAVKGKSRYRISLRAHEIYERVDSSKXXXXXXXXXFCSVNCQAITAALAASFPTDSPYT 83 QDVV ER++ +CG+PLC P++ KG RYRIS+R H++Y+ ++ +CS NC + A A+SFP + T Sbjct: 43 QDVVTERTIVNMCGYPLCSNFLPSDRPHKG--RYRISVREHKVYDLRET---------YMYCSTNCAVNSRAFASSFPEERSST 115
BLAST of jgi.p|Trimin1|347261 vs. uniprot
Match: UPI0011D1BF12 (putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D1BF12) HSP 1 Score: 58.5 bits (140), Expect = 4.050e-5 Identity = 30/76 (39.47%), Postives = 41/76 (53.95%), Query Frame = 0 Query: 2 QDVVEERSLAGLCGWPLCRGPAEWAVKGKSRYRISLRAHEIYERVDSSKXXXXXXXXXFCSVNCQAITAALAASFP 77 +DVV ERS+AGLCG+P C P K RYRISL+ H++Y+ ++ +CS C + A A S P Sbjct: 45 EDVVAERSIAGLCGYPPCAKPLPSDRSRKGRYRISLKEHKVYDLHET---------YMYCSTGCVVNSRAFAGSLP 111 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347261 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topInterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Trimin1|347261|estExt_Genemark1.C_Ctg_90168 ID=Trimin1|347261|estExt_Genemark1.C_Ctg_90168|Name=jgi.p|Trimin1|347261|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=740bpback to top |