Trimin1|347261|estExt_Genemark1.C_Ctg_90168 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|347261
Unique NameTrimin1|347261|estExt_Genemark1.C_Ctg_90168
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length740
Homology
BLAST of jgi.p|Trimin1|347261 vs. uniprot
Match: A0A835YJQ0_9STRA (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJQ0_9STRA)

HSP 1 Score: 959 bits (2480), Expect = 0.000e+0
Identity = 739/739 (100.00%), Postives = 739/739 (100.00%), Query Frame = 0
Query:    1 MQDVVEERSLAGLCGWPLCRGPAEWAVKGKSRYRISLRAHEIYERVDSSKXXXXXXXXXFCSVNCQAITAALAASFPTDSPYTRAVALAHVADVQTSSGDAPGAAPAKTTAAKRARRRDSQAPHAADIRQKLEALSLADGGGALSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVSRGDAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRDGGAMEGITEQLQAVEISQGAEGAGEGGKAGAQAAPQAGEGKHVGGGSRGRPTAAQRKAKGALPPRPHRVADAVMKRAVARCRRGRSVPLTPRTAAAAXXXXXXXXXXXXXXXXXXXALVERXXXXXXXXXXXXXXXXXXXXXAPAAAQPMPLLQPAFRGLVEGHAPSPAFEATVSFSVAPREAPLGASTPPMASTKGPPEEGEGLEEGSTSGEAEEGDSDAPPQGDADDWDEEXXXXXXGSDADGPGGPWLDLDALHDKRAREEFRASLSSFITLWGALAEWVTPETRACLLRLRGDPAATSTSSALFSAEGQDAAVPLQRAPHAAAATLDGRHRAVSAQVHKHARATLLAQQGPFLLGWSARCSSGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSVAAAREVLAALLASFDYTCATPQLAREQWALLPLVLGGALLGGGRRERGSAAAQVSAVASAXXXXXXXXXXXXXXXXXXXXXXVTRSEYRLLCGVLEADACQL 739
            MQDVVEERSLAGLCGWPLCRGPAEWAVKGKSRYRISLRAHEIYERVDSSKXXXXXXXXXFCSVNCQAITAALAASFPTDSPYTRAVALAHVADVQTSSGDAPGAAPAKTTAAKRARRRDSQAPHAADIRQKLEALSLADGGGALSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVSRGDAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRDGGAMEGITEQLQAVEISQGAEGAGEGGKAGAQAAPQAGEGKHVGGGSRGRPTAAQRKAKGALPPRPHRVADAVMKRAVARCRRGRSVPLTPRTAAAAXXXXXXXXXXXXXXXXXXXALVERXXXXXXXXXXXXXXXXXXXXXAPAAAQPMPLLQPAFRGLVEGHAPSPAFEATVSFSVAPREAPLGASTPPMASTKGPPEEGEGLEEGSTSGEAEEGDSDAPPQGDADDWDEEXXXXXXGSDADGPGGPWLDLDALHDKRAREEFRASLSSFITLWGALAEWVTPETRACLLRLRGDPAATSTSSALFSAEGQDAAVPLQRAPHAAAATLDGRHRAVSAQVHKHARATLLAQQGPFLLGWSARCSSGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSVAAAREVLAALLASFDYTCATPQLAREQWALLPLVLGGALLGGGRRERGSAAAQVSAVASAXXXXXXXXXXXXXXXXXXXXXXVTRSEYRLLCGVLEADACQL
Sbjct:    1 MQDVVEERSLAGLCGWPLCRGPAEWAVKGKSRYRISLRAHEIYERVDSSKXXXXXXXXXFCSVNCQAITAALAASFPTDSPYTRAVALAHVADVQTSSGDAPGAAPAKTTAAKRARRRDSQAPHAADIRQKLEALSLADGGGALSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVSRGDAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRDGGAMEGITEQLQAVEISQGAEGAGEGGKAGAQAAPQAGEGKHVGGGSRGRPTAAQRKAKGALPPRPHRVADAVMKRAVARCRRGRSVPLTPRTAAAAXXXXXXXXXXXXXXXXXXXALVERXXXXXXXXXXXXXXXXXXXXXAPAAAQPMPLLQPAFRGLVEGHAPSPAFEATVSFSVAPREAPLGASTPPMASTKGPPEEGEGLEEGSTSGEAEEGDSDAPPQGDADDWDEEXXXXXXGSDADGPGGPWLDLDALHDKRAREEFRASLSSFITLWGALAEWVTPETRACLLRLRGDPAATSTSSALFSAEGQDAAVPLQRAPHAAAATLDGRHRAVSAQVHKHARATLLAQQGPFLLGWSARCSSGGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSVAAAREVLAALLASFDYTCATPQLAREQWALLPLVLGGALLGGGRRERGSAAAQVSAVASAXXXXXXXXXXXXXXXXXXXXXXVTRSEYRLLCGVLEADACQL 739          
BLAST of jgi.p|Trimin1|347261 vs. uniprot
Match: A0A8J5SLX5_ZIZPA (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5SLX5_ZIZPA)

HSP 1 Score: 62.8 bits (151), Expect = 1.950e-6
Identity = 35/82 (42.68%), Postives = 45/82 (54.88%), Query Frame = 0
Query:    3 DVVEERSLAGLCGWPLCRGPA--EWAVKGKSRYRISLRAHEIYERVDSSKXXXXXXXXXFCSVNCQAITAALAASFPTDSPY 82
            DVV ERS+A +CG+P C  P   E A K   R+ ISLR H +Y+  ++ K         FCS  C   +AA AAS P + PY
Sbjct:   54 DVVTERSIADVCGYPACACPIPEEGARKEGPRFHISLREHRVYDLEEARK---------FCSERCLVASAAFAASLPLERPY 126          
BLAST of jgi.p|Trimin1|347261 vs. uniprot
Match: A0A5A7QRG8_STRAF (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7QRG8_STRAF)

HSP 1 Score: 59.3 bits (142), Expect = 3.440e-6
Identity = 29/80 (36.25%), Postives = 43/80 (53.75%), Query Frame = 0
Query:    2 QDVVEERSLAGLCGWPLCRGPAEWAVKGKSRYRISLRAHEIYERVDSSKXXXXXXXXXFCSVNCQAITAALAASFPTDSP 81
            QDVV ER++AG+CG PLC  P       K RYR+SL+ H++Y+  ++ K         +CS  C   +   AA+   + P
Sbjct:   42 QDVVTERTIAGICGHPLCTNPLPTERPRKGRYRVSLKEHKVYDLQETYK---------YCSTGCLINSRTFAATLKEERP 112          
BLAST of jgi.p|Trimin1|347261 vs. uniprot
Match: A0A6P5XQU7_DURZI (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5XQU7_DURZI)

HSP 1 Score: 60.1 bits (144), Expect = 1.130e-5
Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = 0
Query:    2 QDVVEERSLAGLCGWPLCRGPAEWAVKGKSRYRISLRAHEIYERVDSSKXXXXXXXXXFCSVNC 65
            +DVV ERS++ +CG+PLCR P       K RYRISL+ H +Y+ ++++          FCS +C
Sbjct:   43 EDVVTERSISNICGYPLCRNPLPSEPLRKGRYRISLKEHRVYDLLETNM---------FCSADC 97          
BLAST of jgi.p|Trimin1|347261 vs. uniprot
Match: A0A6P5XQN7_DURZI (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=4 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5XQN7_DURZI)

HSP 1 Score: 60.1 bits (144), Expect = 1.360e-5
Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = 0
Query:    2 QDVVEERSLAGLCGWPLCRGPAEWAVKGKSRYRISLRAHEIYERVDSSKXXXXXXXXXFCSVNC 65
            +DVV ERS++ +CG+PLCR P       K RYRISL+ H +Y+ ++++          FCS +C
Sbjct:   43 EDVVTERSISNICGYPLCRNPLPSEPLRKGRYRISLKEHRVYDLLETNM---------FCSADC 97          
BLAST of jgi.p|Trimin1|347261 vs. uniprot
Match: A0A8B7BM07_PHODC (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B7BM07_PHODC)

HSP 1 Score: 60.1 bits (144), Expect = 1.370e-5
Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 0
Query:    2 QDVVEERSLAGLCGWPLCRGPAEWAVKGKSRYRISLRAHEIYERVDSSKXXXXXXXXXFCSVNCQAITAALAASFPTD 79
            +DVV ERS+A  CG+PLC  P    V  KSRYRISLR H++Y+  ++ K         +CS  C   + A A S  ++
Sbjct:   45 EDVVVERSIADHCGYPLCPNPLPQDVPRKSRYRISLREHKVYDLEETYK---------YCSPACVIASRAFAGSLSSE 113          
BLAST of jgi.p|Trimin1|347261 vs. uniprot
Match: A0A0D3AXD9_BRAOL (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=6 Tax=Brassica TaxID=3705 RepID=A0A0D3AXD9_BRAOL)

HSP 1 Score: 59.7 bits (143), Expect = 1.960e-5
Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 0
Query:    2 QDVVEERSLAGLCGWPLCRGPAEWAVKGKSRYRISLRAHEIYERVDSSKXXXXXXXXXFCSVNC 65
            +DVV ER++A LCG+PLCR P    V  + +YR+SL+ H +Y+  +S K         FCS  C
Sbjct:   67 EDVVTERTIAKLCGYPLCRSPLPSDVSRRGKYRVSLKEHRVYDVRESQK---------FCSGEC 121          
BLAST of jgi.p|Trimin1|347261 vs. uniprot
Match: A0A7S0N1B1_9CHLO (RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N1B1_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 3.050e-5
Identity = 27/67 (40.30%), Postives = 37/67 (55.22%), Query Frame = 0
Query:    2 QDVVEERSLAGLCGWPLCRGPAEWAVKGKSRYRISLRAHEIYERVDSSKXXXXXXXXXFCSVNCQAI 68
            ++V EERS+AG+CG PLC  P    V    +Y+ISL+ H++YE    S+         FCS  C  I
Sbjct:   22 KEVFEERSIAGVCGSPLCGNPVARLVSSHGKYKISLQHHKVYEVPQHSR---------FCSTTCDVI 79          
BLAST of jgi.p|Trimin1|347261 vs. uniprot
Match: UPI00125D50B0 (putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125D50B0)

HSP 1 Score: 58.5 bits (140), Expect = 3.990e-5
Identity = 32/84 (38.10%), Postives = 48/84 (57.14%), Query Frame = 0
Query:    2 QDVVEERSLAGLCGWPLCRG--PAEWAVKGKSRYRISLRAHEIYERVDSSKXXXXXXXXXFCSVNCQAITAALAASFPTDSPYT 83
            QDVV ER++  +CG+PLC    P++   KG  RYRIS+R H++Y+  ++           +CS NC   + A A+SFP +   T
Sbjct:   43 QDVVTERTIVNMCGYPLCSNFLPSDRPHKG--RYRISVREHKVYDLRET---------YMYCSTNCAVNSRAFASSFPEERSST 115          
BLAST of jgi.p|Trimin1|347261 vs. uniprot
Match: UPI0011D1BF12 (putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D1BF12)

HSP 1 Score: 58.5 bits (140), Expect = 4.050e-5
Identity = 30/76 (39.47%), Postives = 41/76 (53.95%), Query Frame = 0
Query:    2 QDVVEERSLAGLCGWPLCRGPAEWAVKGKSRYRISLRAHEIYERVDSSKXXXXXXXXXFCSVNCQAITAALAASFP 77
            +DVV ERS+AGLCG+P C  P       K RYRISL+ H++Y+  ++           +CS  C   + A A S P
Sbjct:   45 EDVVAERSIAGLCGYPPCAKPLPSDRSRKGRYRISLKEHKVYDLHET---------YMYCSTGCVVNSRAFAGSLP 111          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347261 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A835YJQ0_9STRA0.000e+0100.00RNA polymerase II subunit B1 CTD phosphatase RPAP2... [more]
A0A8J5SLX5_ZIZPA1.950e-642.68RNA polymerase II subunit B1 CTD phosphatase RPAP2... [more]
A0A5A7QRG8_STRAF3.440e-636.25RNA polymerase II subunit B1 CTD phosphatase RPAP2... [more]
A0A6P5XQU7_DURZI1.130e-540.63RNA polymerase II subunit B1 CTD phosphatase RPAP2... [more]
A0A6P5XQN7_DURZI1.360e-540.63RNA polymerase II subunit B1 CTD phosphatase RPAP2... [more]
A0A8B7BM07_PHODC1.370e-541.03RNA polymerase II subunit B1 CTD phosphatase RPAP2... [more]
A0A0D3AXD9_BRAOL1.960e-542.19RNA polymerase II subunit B1 CTD phosphatase RPAP2... [more]
A0A7S0N1B1_9CHLO3.050e-540.30RNA polymerase II subunit B1 CTD phosphatase RPAP2... [more]
UPI00125D50B03.990e-538.10putative RNA polymerase II subunit B1 CTD phosphat... [more]
UPI0011D1BF124.050e-539.47putative RNA polymerase II subunit B1 CTD phosphat... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007308Rtr1/RPAP2 domainPFAMPF04181RPAP2_Rtr1coord: 2..72
e-value: 2.4E-12
score: 47.0
IPR007308Rtr1/RPAP2 domainPROSITEPS51479ZF_RTR1coord: 1..85
score: 13.947105
IPR038534Rtr1/RPAP2 domain superfamilyGENE3D1.25.40.820coord: 1..111
e-value: 1.0E-13
score: 53.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..126
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 417..491
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 254..300
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 442..475
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..127
IPR039693Rtr1/RPAP2PANTHERPTHR14732UNCHARACTERIZEDcoord: 2..525

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:1599682..1609298 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347261mRNA_3659Tribonema minus UTEX_B_3156 mRNAContig_9 1599528..1609298 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|347261|estExt_Genemark1.C_Ctg_90168 ID=Trimin1|347261|estExt_Genemark1.C_Ctg_90168|Name=jgi.p|Trimin1|347261|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=740bp
MQDVVEERSLAGLCGWPLCRGPAEWAVKGKSRYRISLRAHEIYERVDSSK
IYERVDSSKFCSVNCQAITAALAASFPTDSPYTRAVALAHVADVQTSSGD
APGAAPAKTTAAKRARRRDSQAPHAADIRQKLEALSLADGGGALSAAAAA
DAGAAAAAAAAGTGDGGRGGAGAAVAIAAEAAAAAADVSRGDAAAASDAA
ASAAAAAAAMDTEGDTSAAASVSDAAVEVTAAQHRDGGAMEGITEQLQAV
EISQGAEGAGEGGKAGAQAAPQAGEGKHVGGGSRGRPTAAQRKAKGALPP
RPHRVADAVMKRAVARCRRGRSVPLTPRTAAAAAARALPPRPHRVADAVV
KRALVERALPPRPHRVADTVMKRAVVERAPAAAQPMPLLQPAFRGLVEGH
APSPAFEATVSFSVAPREAPLGASTPPMASTKGPPEEGEGLEEGSTSGEA
EEGDSDAPPQGDADDWDEEGEEGGGGSDADGPGGPWLDLDALHDKRAREE
FRASLSSFITLWGALAEWVTPETRACLLRLRGDPAATSTSSALFSAEGQD
AAVPLQRAPHAAAATLDGRHRAVSAQVHKHARATLLAQQGPFLLGWSARC
SSGGSSGGGSAAGSGSGGGAVGIGGGIGGGGGRGSSVAAAREVLAALLAS
FDYTCATPQLAREQWALLPLVLGGALLGGGRRERGSAAAQVSAVASAAEA
LEAAAETLGALEAAAEALGVTRSEYRLLCGVLEADACQL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007308Rtr1/RPAP2_dom
IPR038534Rtr1/RPAP2_sf
IPR039693Rtr1/RPAP2