Trimin1|347230|estExt_Genemark1.C_Ctg_90110 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|347230
Unique NameTrimin1|347230|estExt_Genemark1.C_Ctg_90110
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length373
Homology
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BLAST of jgi.p|Trimin1|347230 vs. uniprot
Match: A0A835YR57_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR57_9STRA)

HSP 1 Score: 431 bits (1107), Expect = 1.560e-147
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0 
Query:    1 MRDYEQGQLSGEAVPAQATQYGALPVDVDVIEEMPPRNSLRNRRAKVAAAGALAALLIVGLMNVAVPSSNATSPVMVAPVALSEEGDVMFCLQSGCSKVVGELMMNGANPTVRALSDCLDDAGADKALGGKCLAPPAVDDPFRKEKMNLRVCGLCNKCVRGGSPPKARCDSVVGTYAQAYAAPSMAVDVTKSHAKTSAFANFATCWTIWWCPTPA 215
            MRDYEQGQLSGEAVPAQATQYGALPVDVDVIEEMPPRNSLRNRRAKVAAAGALAALLIVGLMNVAVPSSNATSPVMVAPVALSEEGDVMFCLQSGCSKVVGELMMNGANPTVRALSDCLDDAGADKALGGKCLAPPAVDDPFRKEKMNLRVCGLCNKCVRGGSPPKARCDSVVGTYAQAYAAPSMAVDVTKSHAKTSAFANFATCWTIWWCPTPA
Sbjct:    1 MRDYEQGQLSGEAVPAQATQYGALPVDVDVIEEMPPRNSLRNRRAKVAAAGALAALLIVGLMNVAVPSSNATSPVMVAPVALSEEGDVMFCLQSGCSKVVGELMMNGANPTVRALSDCLDDAGADKALGGKCLAPPAVDDPFRKEKMNLRVCGLCNKCVRGGSPPKARCDSVVGTYAQAYAAPSMAVDVTKSHAKTSAFANFATCWTIWWCPTPA 215
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|347230 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YR57_9STRA1.560e-147100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006970PT repeatPFAMPF04886PTcoord: 253..288
e-value: 4.8E-8
score: 32.4
coord: 281..316
e-value: 3.8E-9
score: 35.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 217..252
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 217..372
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 353..372

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:1089010..1093830 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|347230mRNA_3602Tribonema minus UTEX_B_3156 mRNAContig_9 1088971..1093837 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|347230|estExt_Genemark1.C_Ctg_90110 ID=Trimin1|347230|estExt_Genemark1.C_Ctg_90110|Name=jgi.p|Trimin1|347230|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=373bp
MRDYEQGQLSGEAVPAQATQYGALPVDVDVIEEMPPRNSLRNRRAKVAAA
GALAALLIVGLMNVAVPSSNATSPVMVAPVALSEEGDVMFCLQSGCSKVV
GELMMNGANPTVRALSDCLDDAGADKALGGKCLAPPAVDDPFRKEKMNLR
VCGLCNKCVRGGSPPKARCDSVVGTYAQAYAAPSMAVDVTKSHAKTSAFA
NFATCWTIWWCPTPAPTSSEPTPAPTPWPTPSPTPAPTPAPTPEPTPEPT
AEPTTAEPTAEPTPEPTAEPTSEPTQEPTAEPTAEPTAEPTEEPTAEPTA
EPTAEPTEEPTAEPTEAPTDKPTKKPTKKPTAAPTSEPIAEPEPEPEVEP
VPEVEPAVEPAPEEPAPEAATP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006970PT