Trimin1|346655|estExt_Genemark1.C_Ctg_40049 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|346655
Unique NameTrimin1|346655|estExt_Genemark1.C_Ctg_40049
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length389
Homology
BLAST of jgi.p|Trimin1|346655 vs. uniprot
Match: A0A835YTD9_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTD9_9STRA)

HSP 1 Score: 702 bits (1813), Expect = 1.980e-254
Identity = 350/350 (100.00%), Postives = 350/350 (100.00%), Query Frame = 0
Query:    1 MADSTTVVALIKAAQHEERLCGAVLGATRPRQSQQQHRRRLELNTDVELQSPHRCPVSWLDVDQSEGRYLLTAAADGAIALFDLDSKGVITDADGGGQLRRRIKRLSLAPRTPPAAHRTAEAALRGHCYAASAVQWYPVDNGLFISAGMDGVVKAWDTNTFKVVLDFNLPAMVFAAALPPSSAGHSGEVWAVAWSPADEYLLASGATDCRVRLWDIRRSGASACLMILDQNQTAGEYTRLLLWETPSGANTLTHYLGTKNRRVKPFRMAPAEDLVFFPVEGTGDVLGFPVNTHDGRAECALRGHFETVQACAYRATTQELITSGADGLVLLWSCPATRGVAGGAAQDEAD 350
            MADSTTVVALIKAAQHEERLCGAVLGATRPRQSQQQHRRRLELNTDVELQSPHRCPVSWLDVDQSEGRYLLTAAADGAIALFDLDSKGVITDADGGGQLRRRIKRLSLAPRTPPAAHRTAEAALRGHCYAASAVQWYPVDNGLFISAGMDGVVKAWDTNTFKVVLDFNLPAMVFAAALPPSSAGHSGEVWAVAWSPADEYLLASGATDCRVRLWDIRRSGASACLMILDQNQTAGEYTRLLLWETPSGANTLTHYLGTKNRRVKPFRMAPAEDLVFFPVEGTGDVLGFPVNTHDGRAECALRGHFETVQACAYRATTQELITSGADGLVLLWSCPATRGVAGGAAQDEAD
Sbjct:    1 MADSTTVVALIKAAQHEERLCGAVLGATRPRQSQQQHRRRLELNTDVELQSPHRCPVSWLDVDQSEGRYLLTAAADGAIALFDLDSKGVITDADGGGQLRRRIKRLSLAPRTPPAAHRTAEAALRGHCYAASAVQWYPVDNGLFISAGMDGVVKAWDTNTFKVVLDFNLPAMVFAAALPPSSAGHSGEVWAVAWSPADEYLLASGATDCRVRLWDIRRSGASACLMILDQNQTAGEYTRLLLWETPSGANTLTHYLGTKNRRVKPFRMAPAEDLVFFPVEGTGDVLGFPVNTHDGRAECALRGHFETVQACAYRATTQELITSGADGLVLLWSCPATRGVAGGAAQDEAD 350          
BLAST of jgi.p|Trimin1|346655 vs. uniprot
Match: D7FSG2_ECTSI (WD-repeat protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSG2_ECTSI)

HSP 1 Score: 253 bits (645), Expect = 3.430e-75
Identity = 167/435 (38.39%), Postives = 211/435 (48.51%), Query Frame = 0
Query:   41 LELNTDVELQSPHRCPVSWLDVDQSEGRYLLTAAADGAIALFDLDSKGVITDADGGGQ------------------LRRRIKRLSLAPRTP--PAAHRTAEA---ALRGHCYAASAVQWYPVDNGLFISAGMDGVVKAWDTNTFKVVLDFNLPAMVFAAALPPSS-----------------------------AGHSGEVWAVAWSPADEYLLASGATDCRVRLWDIRRSGASACLMILDQNQ------------------------------------------------------------------------------------TAGEYTRLLLWETPSGANTLTHYLGTKNRRVKPFRMA---PA---EDLVFFPVEGTGDVLGFPVNTHDGRAECALRGHFETVQACAYRATTQELITSGADGLVLLWS 333
            L+L+ +VE++SPH  PV+WLDVD +E RYLLT  AD  +A+FDLD  G    +   G                    RRR K L    RTP  P +  +      +  GH ++ S VQWYPVD GLF+S  MDGVVK WDTNT  VVL+F+    V++A++ P++                             +GHS  V A AWSP  E+LLA+G+ D  VRLWDIRRSGASACL+ LDQ+Q                                                                                    TAG   RL LWE  +G NT+T+YL TKN+R +PF MA   PA    + VFFP + +GDVL FP++T DGR +  LRGHF+ VQ CAYR  TQE++T GADGLVLLWS
Sbjct:   32 LDLDINVEIKSPHHGPVTWLDVDSAEERYLLTGGADCTVAVFDLDGAGEKRPSLASGDDNNSGPRRHGPAAETVAARRRRPKVLREVGRTPRVPLSQSSGXXXXXSYGGHRHSVSVVQWYPVDTGLFVSGAMDGVVKVWDTNTLGVVLEFDFKDKVYSASMSPTTGQHHLIAVGSDSPQARLCDIRSGAFAHALSGHSEAVSACAWSPRSEFLLATGSADQTVRLWDIRRSGASACLISLDQHQEDXXXXXXXXXXXHTVRCGSGVGGSADGSDDGRGSGVRGSGKRKRGYLKHIKLAPHASRASKFARAHAGPVNSLCFAPEGLHLLTAGTDNRLRLWEVETGRNTMTNYLQTKNKRRRPFGMAVGRPAGRRSETVFFPNDKSGDVLVFPLHTPDGRPKGKLRGHFDPVQCCAYRPRTQEVVTCGADGLVLLWS 466          
BLAST of jgi.p|Trimin1|346655 vs. uniprot
Match: A0A103YCS6_CYNCS (G-protein beta WD-40 repeat-containing protein n=3 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103YCS6_CYNCS)

HSP 1 Score: 150 bits (379), Expect = 5.000e-38
Identity = 107/359 (29.81%), Postives = 160/359 (44.57%), Query Frame = 0
Query:   41 LELNTDVELQSPHRCPVSWLDVDQSEGRYLLTAAADGAIALFDLDSKGVITDADGGGQLRRRIKRLSLAPRTPPAAHRTAEAALRGHCYAASAVQWYPVDNGLFISAGMDGVVKAWDTNTFKVVLDFNLPAMVFAAALPPSS-----------------------------AGHSGEVWAVAWSPADEYLLASGATDCRVRLWDIRRSGASACLMILDQN---------------------------QTAGEYTRLLLWETPSGANT--------LTHYLGTKNRRVKPFRMAPAEDLVFFPVEGTGDVLGFPVNTHDGRAECALRGHFETVQACAYRATTQELITSGADGLVLLWSCP 335
            L+L+   E+ SPHR  ++ L VD +EGRYLL+ A+D ++A++D+      TD DGGG + +  K + L  +     H+       GH +A S   WYP+D GLF++   D  V  WDTNT +VV+DF +P  V+  A+   +                             +GH   + AV WS + E++L +G  D  +RLWDIRR+G   C  +LDQ+                           QT+    R    +  SG+ +        L H  G+  +R+ P  ++  +              G   +   G+A   L GH+E V  C Y A  QEL T G D  +L+WS P
Sbjct:   30 LQLSNHKEIVSPHRGAINSLQVDLTEGRYLLSGASDASLAVYDIQRA---TDYDGGGLIAKH-KPILLVDKQ----HQN------GHKFAISTAIWYPIDTGLFVTGSYDHHVNVWDTNTTQVVMDFKMPGKVYRTAMSSLATSHMLIATATEDVQVRLCDMASGAFSHTLSGHRDGIMAVEWSTSSEWVLVTGGCDGAIRLWDIRRAG---CFSVLDQSHSQLGRRPPLLERSTTKVSTSKCSLPGQTSSAKARAPQRKGSSGSGSKHSGSSRILRHAKGSAKQRLHPGLLSSQDRATAH--------YGAAFDVWTGKASMTLHGHYEHVNCCWYGAHDQELYTGGNDRQILIWSPP 363          
BLAST of jgi.p|Trimin1|346655 vs. uniprot
Match: A0A078GR06_BRANA ((rape) hypothetical protein n=12 Tax=Brassicaceae TaxID=3700 RepID=A0A078GR06_BRANA)

HSP 1 Score: 151 bits (381), Expect = 7.930e-38
Identity = 117/435 (26.90%), Postives = 172/435 (39.54%), Query Frame = 0
Query:   41 LELNTDVELQSPHRCPVSWLDVDQSEGRYLLTAAADGAIALFDLDSKGVITDADGGGQLRRRIKRLSLAPRTPPAAHRTAEAALRGHCYAASAVQWYPVDNGLFISAGMDGVVKAWDTNTFKVVLDFNLPAMVFAAALPPSS-----------------------------AGHSGEVWAVAWSPADEYLLASGATDCRVRLWDIRRSGASACLMILDQNQT----------------------------------------------------------------------------------------------AGEYTRLLLWETPSGANTLTHYLGTKNRRVKPFRMAPAED--LVFFPVEGTGDVLGFPVNTHDGRAECALRGHFETVQACAYRATTQELITSGADGLVLLWSCPATRGVAGGAAQDEAD 350
            L+L+   +  SPHR  V+ L VD +EGRYLL+ A+DG+ A+FD       TD++  G + +     S+        H        GH +A S+  WYP+D GLF++   D ++K WDTNT + V+DF +P  V+  A+   +                             +GH   V +V WS + E++L +G  D  +R WDIRR+G   C  +LDQ+ T                                                                                              AG  +R+ LW+T SG NTL ++   +    K  +MA ++D  L+F P   T    G       GR     RGH+E+V  C + +T QEL TSGAD  +L+WS        GG+ + E D
Sbjct:   30 LQLSNRKDFVSPHRASVNSLQVDLTEGRYLLSGASDGSAAVFDTQRA---TDSEASGLIAKHKCIFSVDK-----GHE------HGHRFAVSSAVWYPIDTGLFVTGSFDHLIKVWDTNTAQAVVDFKMPGKVYRTAMSSLAMSHTLIAAGTEDVQVRLCDIASGAFSHTLSGHRDGVMSVEWSTSSEWVLYTGGCDGAIRFWDIRRAG---CFRVLDQSVTQLGVRPPILKHTAVNSKVSAEKSSSGGKNRLKTLQSKHTGSQSMKGSSSVKASVEKSRQKRLHPGMLSTLDRATAHYGVVTGLKATNDGMYLLSAGSDSRIRLWDTQSGCNTLLNFETGRLHTSKAIQMATSDDPALLFVPCMKTVKAFGM----WSGRTTLMFRGHYESVNTCCFNSTDQELYTSGADRQILVWS-------PGGSLEGEMD 436          
BLAST of jgi.p|Trimin1|346655 vs. uniprot
Match: B3S4S1_TRIAD (Uncharacterized protein n=2 Tax=Trichoplax TaxID=10227 RepID=B3S4S1_TRIAD)

HSP 1 Score: 150 bits (378), Expect = 9.730e-38
Identity = 102/360 (28.33%), Postives = 156/360 (43.33%), Query Frame = 0
Query:   41 LELNTDVELQSPHRCPVSWLDVDQSEGRYLLTAAADGAIALFDLDSKGVITDADGGGQLRRRIKRLSLAPRTPPAAHRTAEAALRGHCYAASAVQWYPVDNGLFISAGMDGVVKAWDTNTFKVVLDFNLPAMVFAAALPP-----------------------------SSAGHSGEVWAVAWSPADEYLLASGATDCRVRLWDIRRSGASACLMILDQNQ---------------------------------TAGEYTRLLLWETPSGANTLTHYLGTKNRRVKPFRMAPAE----DLVFFPVEGTGDVLGFPVNTHDGRAECALRGHFETVQACAYRATTQELITSGADGLVLLWSC 334
            +EL+     +      ++ LD++ +EG+YLLT+ ++G I L+DLD        D    +    + +    R+  A H+ +             +QWYP D G+F+S+GMD ++K WDTN   VV +FN+   ++   + P                             S  GH   V+ V WSPA+EY LA+G+ D R+ +WDIRR  AS  +  LDQ                                   + G    L LW+  +G NTL ++    N   K ++ + +     D VF P EG  ++  + + T  GR    LRGH+  V  C Y    QEL + G D  +L+WSC
Sbjct:   30 MELSKTCSFKRKFSAGINCLDLELAEGKYLLTSGSEGLIVLYDLD--------DATNDVLSEFQPVCAVDRSSAACHKNS----------VETIQWYPHDTGMFLSSGMDSLLKVWDTNNLDVVEEFNIQKPIYNHHMSPIATQHYLVAVGSRREVVVLCDLKSGSMTHSLKGHRSSVYTVQWSPAEEYTLATGSRDNRIFIWDIRR--ASGFVAALDQYNGELHTSASKARSCTSHNGAVSGIRFTEDGRFLISYGTDNELRLWDASNGKNTLVNFGKIYNTSSKGYKFSLSSGGLSDYVFVPSEG--NIATYEIQT--GRQLSTLRGHYNNVSCCCYNPYRQELYSGGNDSNILVWSC 365          
BLAST of jgi.p|Trimin1|346655 vs. uniprot
Match: A0A197KK72_9FUNG (Excision repair cross-complementing rodent repair deficiency, complementation group 8 n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197KK72_9FUNG)

HSP 1 Score: 149 bits (376), Expect = 1.610e-37
Identity = 116/378 (30.69%), Postives = 166/378 (43.92%), Query Frame = 0
Query:   25 LGATRPR--QSQQQHRRRLELNTD--VELQSPHRCPVSWLDVDQSEGRYLLTAAADGAIALFDLDSKGVITDADGGGQLRRRIKRLSLAPRTPPAAHRTAEAALRGHCYAASAVQWYPVDNGLFISAGMDGVVKAWDTNTFKVVLDFNLPAMVFAAALPPSSA----------------------------GHSGEVWAVAWSPADEYLLASGATDCRVRLWDIRRSGASACLMILDQNQT------------------------------AGEYTRLLLWETPSGANTLTHYLGTKNRRVKPFRMAP--------AEDLVFFPVEGTGDVLGFPVNTHDGRAECALRGHFETVQACAYRATTQELITSGADGLVLLW 332
            LG  RP   QS    +R L+L  D    +Q  H   V+ +D++++EGRYLL+   DG I ++DL+        +   + RR IK ++ A +T           + GH    S V WYP DNG+F S+  D  +K WDTN  +V   F+L   V++ A+   +                             GH G V +V WSP  EYLLASG+TD  VRLWDIR+S  S+CL  LD + T                               G   ++ LW   +G NTLT+Y GT  R    + + P        +   VF+P      ++    +  DG     L G F  + A A+R  TQE+ ++G D  +L W
Sbjct:   23 LGIVRPSALQSHYLSKRLLDLTLDPSTTIQREHVSAVNTIDIEEAEGRYLLSGGGDGNIYIYDLE--------ESQREERRVIKCMAGAEKT-----------ISGHKGGISRVNWYPFDNGMFTSSSFDSTIKVWDTNAMEVACTFDLENKVYSHAISSKATHGLIATASSDPRIRLCDLKTGAFTHSLPGHRGTVLSVEWSPRHEYLLASGSTDTTVRLWDIRKS--SSCLCSLDMHNTNSPPLSEANVAHTRTVNGLAFTPDGLHLVSTGHDDKMRLWNLYTGQNTLTNY-GTMIRNQFVYSLVPVMSPMSAGSPTYVFYPSNDRSILM---YDLMDGSLVKRLTGSFGRITALAWRPRTQEIYSAGNDHDILAW 375          
BLAST of jgi.p|Trimin1|346655 vs. uniprot
Match: A0A024UD24_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UD24_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.430e-36
Identity = 109/368 (29.62%), Postives = 158/368 (42.93%), Query Frame = 0
Query:   60 LDVDQSEGRYLLTAAADGAIALFDLDSKGVITDADGGGQLRRRIKRLSLAPRTPPAAHRTAEAA----LRGHCYAASAVQWYPVDNGLFISAGMDGVVKAWDTNTFKVVLDFNLPAMVFAAALPPSSA---------------------------GHSGEVWAVAWSPADEYLLASGATDCRVRLWDIRRSGASACLMILDQN--------------------------------QTAGEYTRLL----------------------LWETPSGANTLTHYLGTKNRRVKPFRMAPAED------LVFFPVEGTGDVLGFPVNTHDGRAECA-LRGHFETVQACAYRATTQELITSGADGLVLLWSCP 335
            +D+D  E +YLL  A  GA+ +FDL     I   +    ++      ++ P   P   RT +AA    L GH    +AVQWYPVDNG+FI+   D  VK WD N   V   F L  +V AA   P  +                           GH   V  +AWS +DE+ LA+GA D  +RLWDIRRSGASACLM+L+Q+                                 +A  +T+ +                      LW   +G +   +Y   + +  +P  +   ++      +V+ PV   G V+   ++  +    C  L  H+  V +C YR TT+ELIT G DGL++LW+ P
Sbjct:   56 MDLDPVENQYLLVGAGTGALRIFDLSIFDTIPLPEDSSSIKPMC---TVKPLKRPRDVRTFDAAQTQNLPGHAAGITAVQWYPVDNGMFITGSQDTTVKLWDANEMDVASAFCLHDVVHAACFSPCGSTLLAVGTDHADVRLCDVAIGASTHRLLGHRAAVRCIAWSLSDEFHLATGAADGSIRLWDIRRSGASACLMVLNQDGLPDIPRHEAAVRVPKRPRHNDPHHCSAENHGTSAQAHTQAIQSLRYTPDGRCLVSSGGDNCMRLWNASTGVHLFHNYGLIQCKGPRPVTIGLVQEGGSDSTMVYHPVGSNGSVVSHLLHGVNHSTPCTKLTAHYSRVTSCIYRPTTRELITGGEDGLIMLWTPP 420          
BLAST of jgi.p|Trimin1|346655 vs. uniprot
Match: A0A067C0V8_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C0V8_SAPPC)

HSP 1 Score: 146 bits (368), Expect = 5.980e-36
Identity = 107/371 (28.84%), Postives = 153/371 (41.24%), Query Frame = 0
Query:   60 LDVDQSEGRYLLTAAADGAIALFD---LDSKGVI-TDAD---GGGQLRRRIKRLSLAPRTPPAAHRTAEAALRGHCYAASAVQWYPVDNGLFISAGMDGVVKAWDTNTFKVVLDFNLPAMVFAAALPPSSA-----------------------------GHSGEVWAVAWSPADEYLLASGATDCRVRLWDIRRSGASACLMILDQNQTA----------------------------------------------------GEYTRLLLWETPSGANTLTHYLGTKNRRVKPFRMAPAED------LVFFPVEGTGDVLGFPV-NTHDGRAECALRGHFETVQACAYRATTQELITSGADGLVLLWSCP 335
            +D++ +E RYLL     GA+ L+D   LD  GV+ TD         LR ++    L  R              GH    ++V WYPVDNG+F+S  +D  VK WD N  +V   FNL   V  AA  P  A                             GH   + ++AWS  +E+ LASGATD  +R+WDIRRSGA+ACL+ L+ +  A                                                    G    + LW   SG +   HY G K    +   +A A++      +++ PV   G +  + + NT          GH+  V +C YRA+T+EL++ G DGL+ +WS P
Sbjct:   53 MDLEAAEDRYLLVGTGMGALHLYDMAALDVPGVVATDIKPLCSIKPLRGKLPAQQLQDRP-------------GHASGVTSVSWYPVDNGMFVSTSLDACVKVWDANELEVASSFNLTDAVHMAAFSPLPATAHLLAVGTDRPEVRLADISIGAATHRLVGHRASIRSLAWSNTNEFQLASGATDGSIRVWDIRRSGATACLLCLNHDGAADVPRRIEVASSSKKRKMSQDPHIAAAASSALAHTKAVQSLAFTPDGRFLVSSGADRAMRLWNAASGTHMFHHYTGIKCHGARHVTVAMAQEARSDSTMLYHPVGSHGVIASYLLHNTESTEPIAKYTGHYSRVTSCLYRASTRELVSGGEDGLIAVWSPP 410          
BLAST of jgi.p|Trimin1|346655 vs. uniprot
Match: A0A7K8VP52_9STRI (ERCC8 protein (Fragment) n=3 Tax=Strigidae TaxID=30459 RepID=A0A7K8VP52_9STRI)

HSP 1 Score: 144 bits (363), Expect = 7.080e-36
Identity = 101/357 (28.29%), Postives = 152/357 (42.58%), Query Frame = 0
Query:   41 LELNTDVELQSPHRCPVSWLDVDQSEGRYLLTAAADGAIALFDLDSKGVITDADGGGQLRRRIKRLSLAPRTPPAAHRTAEAALRGHCYAASAVQWYPVDNGLFISAGMDGVVKAWDTNTFKVVLDFNLPAMVFAAALPPSSA-----------------------------GHSGEVWAVAWSPADEYLLASGATDCRVRLWDIRRSGASACLMILDQNQ--------------------------------TAGEYTRLLLWETPSGANTLTHYLGTKNRRVKPFRMAPAE----DLVFFPVEGTGDVLGFPVNTHDGRAECALRGHFETVQACAYRATTQELITSGADGLVLLW 332
            LELN D +++  H+  ++ LD++  EGRY+L+  +DG I ++DL++           +     K +    R+ P  HR          ++   VQWYP D G+F S+  D  +K WDTN  +    F+    V++  + P +                              GH  EV AV+WSP  EY+LA+ + D RV+LWD+RR  AS CL  LDQ+                                 T G   R+ LW + +G NTL +Y   +N   K  +   +     +  F P   T  +  + V T  G     LRGH+ TV  CAY+   QE+ +   D  +L W
Sbjct:    5 LELNKDRDVERIHKSGINSLDIETVEGRYMLSGGSDGVIVIYDLENLS--------REPHYICKAIHFVGRSHPYVHR----------FSVETVQWYPHDTGMFTSSSFDKTLKIWDTNVLQPADTFSFDGTVYSHHMSPVATKHTLIAVGTKSPKVQLCDLKSGSCCHILQGHKQEVLAVSWSPRHEYVLATASADSRVKLWDVRR--ASGCLSTLDQHNGEKSQASSEAANTAHDGRVNGLCYTSDGLYLLTIGTDHRMRLWNSSTGENTLVNYGKIRNESRKAVKCTVSNGCNPEFAFVPCAST--IAVYAVFT--GELITVLRGHYSTVNCCAYQYNFQEIYSGSKDSNILAW 337          
BLAST of jgi.p|Trimin1|346655 vs. uniprot
Match: UPI001B8891EC (DNA excision repair protein ERCC-8-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B8891EC)

HSP 1 Score: 144 bits (362), Expect = 1.700e-35
Identity = 101/356 (28.37%), Postives = 153/356 (42.98%), Query Frame = 0
Query:   41 LELNTDVELQSPHRCPVSWLDVDQSEGRYLLTAAADGAIALFDLDSKGVITDADGGGQLRRRIKRLSLAPRTPPAAHRTAEAALRGHCYAASAVQWYPVDNGLFISAGMDGVVKAWDTNTFKVVLDFNLPAMVFAAALPPSSA-----------------------------GHSGEVWAVAWSPADEYLLASGATDCRVRLWDIRRSGASACLMILDQNQ-------------------------------TAGEYTRLLLWETPSGANTLTHYLGTKNRRVKPFRMAPAE----DLVFFPVEGTGDVLGFPVNTHDGRAECALRGHFETVQACAYRATTQELITSGADGLVLLW 332
            LEL+   + +  H+ P+  LD+D +EGRYLL+ A +G +A+ DL+        D  G  R   K +    R    AH+          ++ + VQWYP+D GLF ++G D V+K WDTN       +    ++++  L P +                              GH   ++ V WS  DE++LASG+ D RV LWDIR++  S  LM LDQ+                                T G    L LW T +G NT+ +Y   +N   K  ++A ++    D+V  P E   ++L      H G     LRGH+  V +C Y     E+ +   D  +L+W
Sbjct:   30 LELSKYTDCERVHKSPIGTLDIDLAEGRYLLSGATNGTVAIHDLE--------DFSGDFRHIYKHVCGVNRDNRHAHK----------HSVTTVQWYPLDTGLFTTSGTDKVLKIWDTNRLIPADKYRFDTIIYSHHLSPIATKHTLLAVGCEGSTLKLVDLRAGSSTHMLKGHKSSIFCVKWSTKDEFILASGSADNRVMLWDIRKAKGS--LMSLDQHNKQSSSGTKEACTAHNGHVNGMCFTSDGLFLLTFGTDDTLRLWNTSTGKNTMVNYGSIRNDSRKNVQIAISQNGCPDVVIVPNETNIEIL----ELHSGMTINTLRGHYSQVNSCVYHRDRHEVYSGSNDRNILIW 361          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|346655 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YTD9_9STRA1.980e-254100.00WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
D7FSG2_ECTSI3.430e-7538.39WD-repeat protein, putative n=2 Tax=Ectocarpus Tax... [more]
A0A103YCS6_CYNCS5.000e-3829.81G-protein beta WD-40 repeat-containing protein n=3... [more]
A0A078GR06_BRANA7.930e-3826.90(rape) hypothetical protein n=12 Tax=Brassicaceae ... [more]
B3S4S1_TRIAD9.730e-3828.33Uncharacterized protein n=2 Tax=Trichoplax TaxID=1... [more]
A0A197KK72_9FUNG1.610e-3730.69Excision repair cross-complementing rodent repair ... [more]
A0A024UD24_9STRA1.430e-3629.62Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A067C0V8_SAPPC5.980e-3628.84Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
A0A7K8VP52_9STRI7.080e-3628.29ERCC8 protein (Fragment) n=3 Tax=Strigidae TaxID=3... [more]
UPI001B8891EC1.700e-3528.37DNA excision repair protein ERCC-8-like n=1 Tax=Gi... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 294..333
e-value: 0.061
score: 22.4
coord: 44..83
e-value: 2.3
score: 14.7
coord: 171..215
e-value: 2.7E-6
score: 36.9
coord: 117..157
e-value: 0.0014
score: 27.9
IPR001680WD40 repeatPFAMPF00400WD40coord: 184..215
e-value: 1.1E-5
score: 26.1
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 182..217
score: 13.181907
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 301..333
score: 10.307941
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 124..166
score: 10.675542
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 17..335
e-value: 2.0E-54
score: 186.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 342..388
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 124..160
score: 8.676514
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 301..333
score: 8.676514
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 182..217
score: 10.943775
IPR042238DNA excision repair protein Rad28/ERCC8/Ckn1/ATCSA-1PANTHERPTHR46202DNA EXCISION REPAIR PROTEIN ERCC-8coord: 183..235
coord: 28..179
coord: 233..341
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 202..216
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 51..332

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_4contigContig_4:492116..502941 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346655mRNA_1588Tribonema minus UTEX_B_3156 mRNAContig_4 492047..502941 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|346655|estExt_Genemark1.C_Ctg_40049 ID=Trimin1|346655|estExt_Genemark1.C_Ctg_40049|Name=jgi.p|Trimin1|346655|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=389bp
MADSTTVVALIKAAQHEERLCGAVLGATRPRQSQQQHRRRLELNTDVELQ
SPHRCPVSWLDVDQSEGRYLLTAAADGAIALFDLDSKGVITDADGGGQLR
RRIKRLSLAPRTPPAAHRTAEAALRGHCYAASAVQWYPVDNGLFISAGMD
GVVKAWDTNTFKVVLDFNLPAMVFAAALPPSSAGHSGEVWAVAWSPADEY
LLASGATDCRVRLWDIRRSGASACLMILDQNQTAGEYTRLLLWETPSGAN
TLTHYLGTKNRRVKPFRMAPAEDLVFFPVEGTGDVLGFPVNTHDGRAECA
LRGHFETVQACAYRATTQELITSGADGLVLLWSCPATRGVAGGAAQDEAD
DWSSDDEGGSNGAADTGGGAFVPPILMQEPPRRRGRAS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR042238Rad28/ERCC8/Ckn1/ATCSA-1
IPR019775WD40_repeat_CS
IPR036322WD40_repeat_dom_sf