Trimin1|346649|estExt_Genemark1.C_Ctg_40036 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|346649
Unique NameTrimin1|346649|estExt_Genemark1.C_Ctg_40036
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length470
Homology
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BLAST of jgi.p|Trimin1|346649 vs. uniprot
Match: A0A835YTD1_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTD1_9STRA)

HSP 1 Score: 653 bits (1685), Expect = 2.920e-232
Identity = 352/352 (100.00%), Postives = 352/352 (100.00%), Query Frame = 0 
Query:    1 MRGHMYVEVQGATNLPSTKSQPFGEGGEAVAPTTFVKVKVNGEEQLTQTITKTYNPSYGAKFTFSPDGPPSEQLYFTVVCKSTAGDISLCSAHLKFEDIWTGRFSKLLGVQLLDKQGANAGILQVSANWTETVGAATKAQGVIEQAKERAGDLKEQALAKAKELEMAAAPKVDSAAEQADDFIDRSLTRLTGPRPPLLRVDAYYSAVKMTRSPGDLRXXXXXXXXXXXXXTMVYGTVVGLPIVNKLAPIFENVVEGVLSKTPLKPQPGSPEEGAESKGRTVDCIDRRIDGALNGIDEFVDTKKDEAIKALCDGKNAIKGIKPKDKSIVEATVDGIGYSVGATRDAITGTVHG 352
            MRGHMYVEVQGATNLPSTKSQPFGEGGEAVAPTTFVKVKVNGEEQLTQTITKTYNPSYGAKFTFSPDGPPSEQLYFTVVCKSTAGDISLCSAHLKFEDIWTGRFSKLLGVQLLDKQGANAGILQVSANWTETVGAATKAQGVIEQAKERAGDLKEQALAKAKELEMAAAPKVDSAAEQADDFIDRSLTRLTGPRPPLLRVDAYYSAVKMTRSPGDLRXXXXXXXXXXXXXTMVYGTVVGLPIVNKLAPIFENVVEGVLSKTPLKPQPGSPEEGAESKGRTVDCIDRRIDGALNGIDEFVDTKKDEAIKALCDGKNAIKGIKPKDKSIVEATVDGIGYSVGATRDAITGTVHG
Sbjct:    1 MRGHMYVEVQGATNLPSTKSQPFGEGGEAVAPTTFVKVKVNGEEQLTQTITKTYNPSYGAKFTFSPDGPPSEQLYFTVVCKSTAGDISLCSAHLKFEDIWTGRFSKLLGVQLLDKQGANAGILQVSANWTETVGAATKAQGVIEQAKERAGDLKEQALAKAKELEMAAAPKVDSAAEQADDFIDRSLTRLTGPRPPLLRVDAYYSAVKMTRSPGDLRXXXXXXXXXXXXXTMVYGTVVGLPIVNKLAPIFENVVEGVLSKTPLKPQPGSPEEGAESKGRTVDCIDRRIDGALNGIDEFVDTKKDEAIKALCDGKNAIKGIKPKDKSIVEATVDGIGYSVGATRDAITGTVHG 352
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|346649 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YTD1_9STRA2.920e-232100.00C2 domain-containing protein n=1 Tax=Tribonema min... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 136..167
NoneNo IPR availableGENE3D1.20.120.20Apolipoproteincoord: 268..427
e-value: 4.6E-7
score: 31.8
NoneNo IPR availableCDDcd00030C2coord: 5..78
e-value: 1.8991E-6
score: 44.3651
IPR000008C2 domainSMARTSM00239C2_3ccoord: 4..108
e-value: 7.6E-5
score: 32.1
IPR000008C2 domainPFAMPF00168C2coord: 4..98
e-value: 3.6E-8
score: 33.6
IPR000008C2 domainPROSITEPS50004C2coord: 1..109
score: 11.408829
IPR035892C2 domain superfamilyGENE3D2.60.40.150C2 domaincoord: 1..144
e-value: 2.9E-11
score: 45.5
IPR035892C2 domain superfamilySUPERFAMILY49562C2 domain (Calcium/lipid-binding domain, CaLB)coord: 3..134

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_4contigContig_4:317061..322792 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346649mRNA_1569Tribonema minus UTEX_B_3156 mRNAContig_4 314582..322792 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|346649|estExt_Genemark1.C_Ctg_40036 ID=Trimin1|346649|estExt_Genemark1.C_Ctg_40036|Name=jgi.p|Trimin1|346649|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=470bp
MRGHMYVEVQGATNLPSTKSQPFGEGGEAVAPTTFVKVKVNGEEQLTQTI
TKTYNPSYGAKFTFSPDGPPSEQLYFTVVCKSTAGDISLCSAHLKFEDIW
TGRFSKLLGVQLLDKQGANAGILQVSANWTETVGAATKAQGVIEQAKERA
GDLKEQALAKAKELEMAAAPKVDSAAEQADDFIDRSLTRLTGPRPPLLRV
DAYYSAVKMTRSPGDLRPPLPRADAYFPAVTMVYGTVVGLPIVNKLAPIF
ENVVEGVLSKTPLKPQPGSPEEGAESKGRTVDCIDRRIDGALNGIDEFVD
TKKDEAIKALCDGKNAIKGIKPKDKSIVEATVDGIGYSVGATRDAITGTV
HGAFTNVQGFIGGIFGKVQDTSASAVDQAKSAASSAQDVLGRTAEGVKAK
ATEAAHAATDAAGSAVATVKSTAGGAVETVRTRAGGAVEVVKTKAGELTG
CVRMRAGGTVEVVKTKVGE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
IPR035892C2_domain_sf