Trimin1|346596|estExt_Genemark1.C_Ctg_3_t10441 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|346596
Unique NameTrimin1|346596|estExt_Genemark1.C_Ctg_3_t10441
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length175
Homology
BLAST of jgi.p|Trimin1|346596 vs. uniprot
Match: A0A835Z4Y2_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4Y2_9STRA)

HSP 1 Score: 352 bits (904), Expect = 4.960e-123
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
Query:    1 MDAEEQQRRSLCEGEQPVQTRTTTTRFPGGVTVRTFRSGGGSAVSEHDLHELLHMLESLMTADGHLPTDGEGRRSSVSQAALDALTDRVLSAEEVAKLPESQRSCCICLEEFRAGQGVKWLECLHCFHTTCIDAALQRRDECPICKHRVGGGGPPSPDSRPPPSTGNASRPRLF 174
            MDAEEQQRRSLCEGEQPVQTRTTTTRFPGGVTVRTFRSGGGSAVSEHDLHELLHMLESLMTADGHLPTDGEGRRSSVSQAALDALTDRVLSAEEVAKLPESQRSCCICLEEFRAGQGVKWLECLHCFHTTCIDAALQRRDECPICKHRVGGGGPPSPDSRPPPSTGNASRPRLF
Sbjct:    1 MDAEEQQRRSLCEGEQPVQTRTTTTRFPGGVTVRTFRSGGGSAVSEHDLHELLHMLESLMTADGHLPTDGEGRRSSVSQAALDALTDRVLSAEEVAKLPESQRSCCICLEEFRAGQGVKWLECLHCFHTTCIDAALQRRDECPICKHRVGGGGPPSPDSRPPPSTGNASRPRLF 174          
BLAST of jgi.p|Trimin1|346596 vs. uniprot
Match: A0A0L0FCC5_9EUKA (RING-type domain-containing protein (Fragment) n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FCC5_9EUKA)

HSP 1 Score: 79.3 bits (194), Expect = 6.190e-16
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = 0
Query:   82 LDALTDRVLSAEEVAKLPESQRSCCICLEEFRAGQGVKWLECLHCFHTTCIDAALQRRDECPICKHRV 149
            + AL    LS   +AKL E  ++CCICLE+F+AG+ +K L CLH +H  CID  L RR  CP+CKH +
Sbjct:   54 IHALPTETLSKAAIAKLEEGSQNCCICLEDFKAGEKMKRLPCLHTYHDHCIDEWLSRRGTCPVCKHAL 121          
BLAST of jgi.p|Trimin1|346596 vs. uniprot
Match: D8LR18_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR18_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 4.310e-12
Identity = 40/99 (40.40%), Postives = 50/99 (50.51%), Query Frame = 0
Query:   55 MLESLMTADGHLPTDGEGRR----SSVSQAALDALTDRVLSAEEVAKLPESQRSCCICLEEFRAGQGVKWLECLHCFHTTCIDAALQRRDECPICKHRV 149
            +L  L  A  H    G+       S  S  A+ AL    L+A  +A L +  R CCICLE+F AG+    L CLH +HT CI+  LQ    CP CK RV
Sbjct:  374 ILRQLAEAQNHDAAGGDAXXXXGTSPASARAIAALPGEALTAGALAHLKDDGRQCCICLEDFEAGEKATRLPCLHLYHTVCIENWLQTSGTCPQCKFRV 472          
BLAST of jgi.p|Trimin1|346596 vs. uniprot
Match: A0A6H5L176_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L176_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 8.600e-12
Identity = 51/131 (38.93%), Postives = 61/131 (46.56%), Query Frame = 0
Query:   27 FPGGVTVRTFRSGGGSAVSEHDLHELLHM----LESLMTADGHLPTDGEGRR----SSVSQAALDALTDRVLSAEEVAKLPESQRSCCICLEEFRAGQGVKWLECLHCFHTTCIDAALQRRDECPICKHRV 149
            F  G T R  R  G  AVSE +   L  +    L  L  A  H    G        S  S  A+ AL    L+A  +A L +  R CCICLEEF AG+    L CLH +H+ CI+  LQ    CP CK RV
Sbjct:  477 FVRGPTARVRR--GRDAVSEVESLMLARLDARILRRLAEAHNHDAAGGXXXXXXXASPASARAIAALPGETLTAGSLAHLKDDGRQCCICLEEFEAGERATRLPCLHLYHSVCIENWLQTSGTCPQCKFRV 605          
BLAST of jgi.p|Trimin1|346596 vs. uniprot
Match: A0A7S3EZZ3_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EZZ3_9EUKA)

HSP 1 Score: 67.4 bits (163), Expect = 1.830e-10
Identity = 27/59 (45.76%), Postives = 38/59 (64.41%), Query Frame = 0
Query:   93 EEVAKLPESQRSCCICLEEFRAGQGVKWLECLHCFHTTCIDAALQRRDECPICKHRVGG 151
            E+V KLPE  RSCC+CLE+   G  V+ L CLH FH  C +  L+++  CP+C+  + G
Sbjct:  150 EDVTKLPEELRSCCVCLEDVTPGSRVRTLPCLHTFHAECAEEWLKKKKVCPLCQSSIDG 208          
BLAST of jgi.p|Trimin1|346596 vs. uniprot
Match: A0A812QKU4_9DINO (Rnf12-b protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812QKU4_9DINO)

HSP 1 Score: 64.7 bits (156), Expect = 1.970e-9
Identity = 30/69 (43.48%), Postives = 39/69 (56.52%), Query Frame = 0
Query:  105 CCICLEEFRAGQGVKWLECLHCFHTTCIDAALQRRDECPICKHRVGGGGPPSPDSRPPPSTGNASRPRL 173
            C +C+EEFR G+ ++ L CLH +H  CID  L R  ECPICK  +      +P   PPPS    +R R 
Sbjct:  169 CMVCMEEFREGEALRSLPCLHRYHQQCIDQWLSRNAECPICKQDI-----TAPQDMPPPSAQQGARSRF 232          
BLAST of jgi.p|Trimin1|346596 vs. uniprot
Match: A0A183JAP7_9BILA (RING-type domain-containing protein n=1 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183JAP7_9BILA)

HSP 1 Score: 61.6 bits (148), Expect = 6.130e-9
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 0
Query:  103 RSCCICLEEFRAGQGVKWLECLHCFHTTCIDAALQRRDECPICKHRV 149
            +SCCICLEEF AG+ V+ L C H FHT CID  L    +CP+C+  +
Sbjct:   83 KSCCICLEEFVAGEEVRVLPCTHFFHTACIDRWLITNRKCPLCRRNI 129          
BLAST of jgi.p|Trimin1|346596 vs. uniprot
Match: A0A7S3QD49_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QD49_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 9.420e-9
Identity = 31/80 (38.75%), Postives = 41/80 (51.25%), Query Frame = 0
Query:   71 EGRRSSVSQAALDAL-TDRVLSAEEVAKLPESQRSCCICLEEFRAGQGVKWLECLHCFHTTCIDAALQRRDECPICKHRV 149
            E R      A +++L T  +   ++        R CCICLE+F AGQ  + L CLH FH  CID  L+    CP+CK  V
Sbjct:  407 ENRNRGTDPAIINSLPTTTIQDVQKELPADSGHRQCCICLEDFEAGQERRNLPCLHGFHAECIDRWLESNSTCPVCKFDV 486          
BLAST of jgi.p|Trimin1|346596 vs. uniprot
Match: A0BZP1_PARTE (RING-type domain-containing protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0BZP1_PARTE)

HSP 1 Score: 60.5 bits (145), Expect = 2.400e-8
Identity = 24/67 (35.82%), Postives = 43/67 (64.18%), Query Frame = 0
Query:   90 LSAEEVAKLP-------ESQRSCCICLEEFRAGQGVKWLECLHCFHTTCIDAALQRRDECPICKHRV 149
            +S+ E+ ++P       +   +C +C+ +F+    VK LECLH FH+ CID  L+++ ECP+C+H++
Sbjct:   95 MSSSEIKQIPTQKYIPNQKNLNCVVCMIDFKKSDQVKILECLHQFHSKCIDQWLKQKGECPVCRHQL 161          
BLAST of jgi.p|Trimin1|346596 vs. uniprot
Match: A0A7S3P1M8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P1M8_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.480e-8
Identity = 29/55 (52.73%), Postives = 35/55 (63.64%), Query Frame = 0
Query:   98 LPESQRSCCICLEEFRAGQGV-KWLECLHCFHTTCIDAALQRRDECPICKHRVGG 151
            LP+ QR+C ICLE+F  G  V K ++C H FH  C+D  LQR   CPICK  V G
Sbjct:  144 LPDHQRTCNICLEDFVVGDSVRKLVDCTHVFHPACLDRWLQRVASCPICKTEVHG 198          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|346596 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4Y2_9STRA4.960e-123100.00RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A0L0FCC5_9EUKA6.190e-1650.00RING-type domain-containing protein (Fragment) n=1... [more]
D8LR18_ECTSI4.310e-1240.40RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L176_9PHAE8.600e-1238.93RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S3EZZ3_9EUKA1.830e-1045.76Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A812QKU4_9DINO1.970e-943.48Rnf12-b protein n=1 Tax=Symbiodinium natans TaxID=... [more]
A0A183JAP7_9BILA6.130e-953.19RING-type domain-containing protein n=1 Tax=Soboli... [more]
A0A7S3QD49_9STRA9.420e-938.75Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0BZP1_PARTE2.400e-835.82RING-type domain-containing protein n=1 Tax=Parame... [more]
A0A7S3P1M8_9STRA2.480e-852.73Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 105..145
e-value: 8.4E-7
score: 38.6
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 104..146
e-value: 1.2E-9
score: 38.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 105..146
score: 11.250026
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 65..150
e-value: 1.1E-17
score: 65.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 151..174
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availablePANTHERPTHR45931SI:CH211-59O9.10coord: 4..149
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 104..149

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:1587045..1590738 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346596mRNA_448Tribonema minus UTEX_B_3156 mRNAContig_3 1587045..1591252 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|346596|estExt_Genemark1.C_Ctg_3_t10441 ID=Trimin1|346596|estExt_Genemark1.C_Ctg_3_t10441|Name=jgi.p|Trimin1|346596|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=175bp
MDAEEQQRRSLCEGEQPVQTRTTTTRFPGGVTVRTFRSGGGSAVSEHDLH
ELLHMLESLMTADGHLPTDGEGRRSSVSQAALDALTDRVLSAEEVAKLPE
SQRSCCICLEEFRAGQGVKWLECLHCFHTTCIDAALQRRDECPICKHRVG
GGGPPSPDSRPPPSTGNASRPRLF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD