Trimin1|346453|estExt_Genemark1.C_Ctg_10278 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|346453
Unique Name	Trimin1\|346453\|estExt_Genemark1.C_Ctg_10278
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	214

Homology

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BLAST of jgi.p|Trimin1|346453 vs. uniprot
Match: A0A835ZQC1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZQC1_9STRA)

HSP 1 Score: 395 bits (1016), Expect = 8.110e-139
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0

Query:    1 MSALGPHHVSMDSGRKPRHRAAAAAPECARLRRARAAVDLMRRAALQRTRNDAGHTTASAYMQTQISAAFGVWCEARPSCASGSCLATTVRVGRKEGHGRCPRFWRAHPLVCAIGATTETTAAAHASLCRHRGARSRAGSETVAGSSSAAERCTMMRHWLPXXXXXHRAPAYSRGISSARPATTSAAPPPAPSPPALPQKPLPPPLLPLPRPT 213
            MSALGPHHVSMDSGRKPRHRAAAAAPECARLRRARAAVDLMRRAALQRTRNDAGHTTASAYMQTQISAAFGVWCEARPSCASGSCLATTVRVGRKEGHGRCPRFWRAHPLVCAIGATTETTAAAHASLCRHRGARSRAGSETVAGSSSAAERCTMMRHWLPXXXXXHRAPAYSRGISSARPATTSAAPPPAPSPPALPQKPLPPPLLPLPRPT
Sbjct:    1 MSALGPHHVSMDSGRKPRHRAAAAAPECARLRRARAAVDLMRRAALQRTRNDAGHTTASAYMQTQISAAFGVWCEARPSCASGSCLATTVRVGRKEGHGRCPRFWRAHPLVCAIGATTETTAAAHASLCRHRGARSRAGSETVAGSSSAAERCTMMRHWLPXXXXXHRAPAYSRGISSARPATTSAAPPPAPSPPALPQKPLPPPLLPLPRPT 213

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|346453 vs. uniprot

BLAST of jgi.p|Trimin1|346453 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZQC1_9STRA	8.110e-139	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..213

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_1	contig	Contig_1:2015592..2017851 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|346453	mRNA_1186	Tribonema minus UTEX_B_3156	mRNA	Contig_1 2015541..2021165 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|346453|estExt_Genemark1.C_Ctg_10278 ID=Trimin1|346453|estExt_Genemark1.C_Ctg_10278|Name=jgi.p|Trimin1|346453|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=214bp
MSALGPHHVSMDSGRKPRHRAAAAAPECARLRRARAAVDLMRRAALQRTR
NDAGHTTASAYMQTQISAAFGVWCEARPSCASGSCLATTVRVGRKEGHGR
CPRFWRAHPLVCAIGATTETTAAAHASLCRHRGARSRAGSETVAGSSSAA
ERCTMMRHWLPPPPPPHRAPAYSRGISSARPATTSAAPPPAPSPPALPQK
PLPPPLLPLPRPT*