Trimin1|346433|estExt_Genemark1.C_Ctg_10234 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|346433
Unique Name	Trimin1\|346433\|estExt_Genemark1.C_Ctg_10234
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	464

Homology

[Close]

BLAST of jgi.p|Trimin1|346433 vs. uniprot
Match: A0A835ZJ29_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ29_9STRA)

HSP 1 Score: 623 bits (1606), Expect = 1.920e-220
Identity = 463/463 (100.00%), Postives = 463/463 (100.00%), Query Frame = 0

Query:    1 MAEAASRRRPRTQANNGNGSAATADNYIVILQPTVKPDEILNTVLKGHKPGFVYGTIFVGFSVDRLVPLLVLEVRLDPRVLTVVEDRASMGLSREVLMETLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGDAAAPPCACATALAARALVAFAVIAAIRTGIVTPCAALDELRRERAAPLGAQVSRTSGYTVVNRDAGEMYDMGELDGSAPHVYSIHNTXXXXXXXXXXXXXXXXXXXLPSGIQVPTKARTLLGINQTKTCVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPISGKAARMLGIQPMRKAASHASVLEEAASWRESAKRRSTSSGPVPPLQRXXXXXXXXXXXXXXXRPEDDGDDWGYAPSPIRHVSFAAEAQRQPQRXXXXXXXXXXAAPVSTISRKRTPEGQPVVSPTIAAAAEMPPALWRKQSRGQGELSEPEVGAE 463
            MAEAASRRRPRTQANNGNGSAATADNYIVILQPTVKPDEILNTVLKGHKPGFVYGTIFVGFSVDRLVPLLVLEVRLDPRVLTVVEDRASMGLSREVLMETLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGDAAAPPCACATALAARALVAFAVIAAIRTGIVTPCAALDELRRERAAPLGAQVSRTSGYTVVNRDAGEMYDMGELDGSAPHVYSIHNTXXXXXXXXXXXXXXXXXXXLPSGIQVPTKARTLLGINQTKTCVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPISGKAARMLGIQPMRKAASHASVLEEAASWRESAKRRSTSSGPVPPLQRXXXXXXXXXXXXXXXRPEDDGDDWGYAPSPIRHVSFAAEAQRQPQRXXXXXXXXXXAAPVSTISRKRTPEGQPVVSPTIAAAAEMPPALWRKQSRGQGELSEPEVGAE
Sbjct:    1 MAEAASRRRPRTQANNGNGSAATADNYIVILQPTVKPDEILNTVLKGHKPGFVYGTIFVGFSVDRLVPLLVLEVRLDPRVLTVVEDRASMGLSREVLMETLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIGDAAAPPCACATALAARALVAFAVIAAIRTGIVTPCAALDELRRERAAPLGAQVSRTSGYTVVNRDAGEMYDMGELDGSAPHVYSIHNTXXXXXXXXXXXXXXXXXXXLPSGIQVPTKARTLLGINQTKTCVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVPISGKAARMLGIQPMRKAASHASVLEEAASWRESAKRRSTSSGPVPPLQRXXXXXXXXXXXXXXXRPEDDGDDWGYAPSPIRHVSFAAEAQRQPQRXXXXXXXXXXAAPVSTISRKRTPEGQPVVSPTIAAAAEMPPALWRKQSRGQGELSEPEVGAE 463

[Close]

BLAST of jgi.p|Trimin1|346433 vs. uniprot
Match: D8LJV4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJV4_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.020e-8
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 0

Query:   40 ILNTVLKGHKPGFVYGTIFVGFSVDRLVPLLVLEVRLDPRVLTVVEDRASMGLSREVLMETL 101
            +L++VLKG+KP F Y +IF GF+VDR+      E+RLD RVL VVE+R    LS+E+L+ETL
Sbjct:    1 MLSSVLKGYKPTFTYSSIFTGFAVDRVPMQKADEIRLDNRVLKVVENRVVSALSKELLIETL 62

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|346433 vs. uniprot

BLAST of jgi.p|Trimin1|346433 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835ZJ29_9STRA	1.920e-220	100.00	Uncharacterized protein n=2 Tax=Tribonema minus Ta...	[more]
D8LJV4_ECTSI	1.020e-8	54.84	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 339..463

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_1	contig	Contig_1:1630633..1641620 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|346433	mRNA_1143	Tribonema minus UTEX_B_3156	mRNA	Contig_1 1630409..1641620 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|346433|estExt_Genemark1.C_Ctg_10234 ID=Trimin1|346433|estExt_Genemark1.C_Ctg_10234|Name=jgi.p|Trimin1|346433|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=464bp
MAEAASRRRPRTQANNGNGSAATADNYIVILQPTVKPDEILNTVLKGHKP
GFVYGTIFVGFSVDRLVPLLVLEVRLDPRVLTVVEDRASMGLSREVLMET
LQDRASMGLSMEVLMETLQDCLSMGLSREVLIGDAAAPPCACATALAARA
LVAFAVIAAIRTGIVTPCAALDELRRERAAPLGAQVSRTSGYTVVNRDAG
EMYDMGELDGSAPHVYSIHNTGEIYDMGELDGSAPYRYSILPSGIQVPTK
ARTLLGINQTKTCVPNKAAKVMGHFGGVTHVRMAEGDVMGHFGGVTHVRM
AEGDVPISGKAARMLGIQPMRKAASHASVLEEAASWRESAKRRSTSSGPV
PPLQRRRFTFSAPVPPLQRRRPEDDGDDWGYAPSPIRHVSFAAEAQRQPQ
RQQQAAAPPPPAAPVSTISRKRTPEGQPVVSPTIAAAAEMPPALWRKQSR
GQGELSEPEVGAE*