Trimin1|346396|estExt_Genemark1.C_Ctg_10172 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|346396
Unique NameTrimin1|346396|estExt_Genemark1.C_Ctg_10172
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length259
Homology
BLAST of jgi.p|Trimin1|346396 vs. uniprot
Match: A0A836CPR2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPR2_9STRA)

HSP 1 Score: 452 bits (1163), Expect = 9.890e-160
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0
Query:    1 MALDDKGRMMRGRIEFFERNIHKLSKHLTTMVAQHKAGVDVGMKFSERVKDVAAQEPFADLQDRLVALSEVTERIALERKGALCDRAEQQVLAKLTEVQTRVIAPTKALLKDRDECIQSLVKAETEHDLKVQQGKATKDTPLAILELRHCLRNTEKVVDNNMELFEAQRVEDVKENIAVXXXXXXXXXXXXXXXXXXXXRMSRREILQEFVRCEMYYHCRALEMLAPALQHLSGVHGDVASDNIRHEMASLNTRLNYS 258
            MALDDKGRMMRGRIEFFERNIHKLSKHLTTMVAQHKAGVDVGMKFSERVKDVAAQEPFADLQDRLVALSEVTERIALERKGALCDRAEQQVLAKLTEVQTRVIAPTKALLKDRDECIQSLVKAETEHDLKVQQGKATKDTPLAILELRHCLRNTEKVVDNNMELFEAQRVEDVKENIAVXXXXXXXXXXXXXXXXXXXXRMSRREILQEFVRCEMYYHCRALEMLAPALQHLSGVHGDVASDNIRHEMASLNTRLNYS
Sbjct:    1 MALDDKGRMMRGRIEFFERNIHKLSKHLTTMVAQHKAGVDVGMKFSERVKDVAAQEPFADLQDRLVALSEVTERIALERKGALCDRAEQQVLAKLTEVQTRVIAPTKALLKDRDECIQSLVKAETEHDLKVQQGKATKDTPLAILELRHCLRNTEKVVDNNMELFEAQRVEDVKENIAVXXXXXXXXXXXXXXXXXXXXRMSRREILQEFVRCEMYYHCRALEMLAPALQHLSGVHGDVASDNIRHEMASLNTRLNYS 258          
BLAST of jgi.p|Trimin1|346396 vs. uniprot
Match: D7FVS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS5_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 2.160e-42
Identity = 72/124 (58.06%), Postives = 99/124 (79.84%), Query Frame = 0
Query:    1 MALDDKGRMMRGRIEFFERNIHKLSKHLTTMVAQHKAGVDVGMKFSERVKDVAAQEPFADLQDRLVALSEVTERIALERKGALCDRAEQQVLAKLTEVQTRVIAPTKALLKDRDECIQSLVKAE 124
            M LD+KGR + GR+EFF+RN+ +L +H++  V  H+ GV  G+ FS ++K +AAQEPFADLQDRLV L+E+TERI+LERK  + DRA+ QVL KL +++  VIAPT+ALL+DRD C+++LVKAE
Sbjct:    1 MTLDEKGRRLHGRLEFFDRNVAQLIRHISQTVGHHQDGVKHGISFSTKIKTIAAQEPFADLQDRLVGLAEITERISLERKNIMIDRAKSQVLNKLADIKKTVIAPTQALLQDRDSCVKALVKAE 124          
BLAST of jgi.p|Trimin1|346396 vs. uniprot
Match: W7TTF8_9STRA (FAM92 protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTF8_9STRA)

HSP 1 Score: 137 bits (346), Expect = 4.470e-36
Identity = 85/261 (32.57%), Postives = 140/261 (53.64%), Query Frame = 0
Query:    3 LDDKGRMMRGRIEFFERNIHKLSKHLTTMVAQHKAGVDVGMKFSERVKDVAAQEPFADLQDRLVALSEVTERIALERKGALCDRAEQQVLAKLTEVQTRVIAPTKALLKDRDECIQSLVKAETEHD----------LKVQQGKATKDTPLAILELRHCLRNTEKVVDNNMELFEAQRVEDVKENIAVXXXXXXXXXXXXXXXXXXXXRMSRREILQEFVRCEMYYHCRALEMLAPALQHLSGVHGDVASDNIRHEMASLNT 253
            +D+KGR+++GR++F ERN+  L + +  ++  H  G +V M  S++V+D AAQE F DLQ+ L+A++E T+R+A ER+  +C+RAE++V++    + +RV+ PT+ LLKDR+  ++     E +            L ++    TK   LA      C ++T++VVD+N   FE  RV ++K                               +L+E +R EM YHCRALE+L P    +  +  D A  ++  E+  LNT
Sbjct:    1 MDEKGRVLQGRLDFCERNVTTLRQGVRALLRNHDEGCNVTMDLSQKVRDTAAQEQFIDLQEDLIAIAECTKRLAEERRTIMCERAEERVISTFDLILSRVLHPTRLLLKDRERALRKFRAMERKITFSGEQTLLSMLNLEDDADTKQQKLA--NYSECAKHTDEVVDSNFRCFEKSRVLEMK------------------------------AMLEETLRAEMLYHCRALEILEPLCVSMRRLDPDEAMASMTQELDELNT 229          
BLAST of jgi.p|Trimin1|346396 vs. uniprot
Match: D7G989_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G989_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.060e-18
Identity = 45/106 (42.45%), Postives = 61/106 (57.55%), Query Frame = 0
Query:  153 NTEKVVDNNMELFEAQRVEDVKENIAVXXXXXXXXXXXXXXXXXXXXRMSRREILQEFVRCEMYYHCRALEMLAPALQHLSGVHGDVASDNIRHEMASLNTRLNYS 258
            NTE  VDNN ELFEAQRVE++K                              +IL+EF+RCE+YYHCRALE+L PAL H+ GV  + A +N+R ++  +N +L Y+
Sbjct:    2 NTEATVDNNFELFEAQRVEEIK------------------------------DILEEFLRCELYYHCRALEVLGPALMHIGGVDPESARENMREDIEGMNKQLRYT 77          
BLAST of jgi.p|Trimin1|346396 vs. uniprot
Match: A0A835YUU3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUU3_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.410e-12
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 0
Query:    1 MALDDKGRMMRGRIEFFERNIHKLSKHLTTMVAQHK 36
            MALDDK RMMRGRIEFFERNIHKLSKHLTTMVAQHK
Sbjct:    1 MALDDKCRMMRGRIEFFERNIHKLSKHLTTMVAQHK 36          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|346396 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836CPR2_9STRA9.890e-160100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FVS5_ECTSI2.160e-4258.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TTF8_9STRA4.470e-3632.57FAM92 protein n=2 Tax=Nannochloropsis gaditana Tax... [more]
D7G989_ECTSI1.060e-1842.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YUU3_9STRA4.410e-1297.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027267AH/BAR domain superfamilyGENE3D1.20.1270.60Arfaptin homology (AH) domain/BAR domaincoord: 4..235
e-value: 1.3E-6
score: 30.2
IPR009602CBY1-interacting BAR domain-containing protein/FAM92PANTHERPTHR21223UNCHARACTERIZEDcoord: 3..236
NoneNo IPR availablePANTHERPTHR21223:SF2GH04442Pcoord: 3..236

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_1contigContig_1:1064748..1068277 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346396mRNA_1081Tribonema minus UTEX_B_3156 mRNAContig_1 1064748..1068362 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|346396|estExt_Genemark1.C_Ctg_10172 ID=Trimin1|346396|estExt_Genemark1.C_Ctg_10172|Name=jgi.p|Trimin1|346396|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=259bp
MALDDKGRMMRGRIEFFERNIHKLSKHLTTMVAQHKAGVDVGMKFSERVK
DVAAQEPFADLQDRLVALSEVTERIALERKGALCDRAEQQVLAKLTEVQT
RVIAPTKALLKDRDECIQSLVKAETEHDLKVQQGKATKDTPLAILELRHC
LRNTEKVVDNNMELFEAQRVEDVKENIAVRNMEQVTGNSMELFEAQRMER
MSRREILQEFVRCEMYYHCRALEMLAPALQHLSGVHGDVASDNIRHEMAS
LNTRLNYS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027267AH/BAR_dom_sf
IPR009602CBAR/FAM92