Trimin1|346389|estExt_Genemark1.C_Ctg_10164 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|346389
Unique NameTrimin1|346389|estExt_Genemark1.C_Ctg_10164
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length293
Homology
BLAST of jgi.p|Trimin1|346389 vs. uniprot
Match: A0A835ZG16_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG16_9STRA)

HSP 1 Score: 576 bits (1484), Expect = 1.610e-207
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 0
Query:    1 MRQHLYNTVAEDLDAPYAAKILVVGHALSGKTTLVNQLCAVGSRGASRRVSSTVGCTIALKALGPATVIFFCDVGGHEAYKPARSTFYEGGDYDGVMLVYDLCNARSWSALPEWAEELADSGICIAGLGHSASSLGSGLDHLEGGGGGSAQLPAVLVGNKADVRHPSAPSALAAADLLPGFKGAAAEVCALGPAAESDAALAPFLQAAVRHRAGRGRQRHLTTGGSRGSWEGVWSAMPHASSGSIYSDTVMHRPTAKHIADDSDDAQPDAGSSSGALPRPKRPSFTHAKKWC 292
            MRQHLYNTVAEDLDAPYAAKILVVGHALSGKTTLVNQLCAVGSRGASRRVSSTVGCTIALKALGPATVIFFCDVGGHEAYKPARSTFYEGGDYDGVMLVYDLCNARSWSALPEWAEELADSGICIAGLGHSASSLGSGLDHLEGGGGGSAQLPAVLVGNKADVRHPSAPSALAAADLLPGFKGAAAEVCALGPAAESDAALAPFLQAAVRHRAGRGRQRHLTTGGSRGSWEGVWSAMPHASSGSIYSDTVMHRPTAKHIADDSDDAQPDAGSSSGALPRPKRPSFTHAKKWC
Sbjct:    1 MRQHLYNTVAEDLDAPYAAKILVVGHALSGKTTLVNQLCAVGSRGASRRVSSTVGCTIALKALGPATVIFFCDVGGHEAYKPARSTFYEGGDYDGVMLVYDLCNARSWSALPEWAEELADSGICIAGLGHSASSLGSGLDHLEGGGGGSAQLPAVLVGNKADVRHPSAPSALAAADLLPGFKGAAAEVCALGPAAESDAALAPFLQAAVRHRAGRGRQRHLTTGGSRGSWEGVWSAMPHASSGSIYSDTVMHRPTAKHIADDSDDAQPDAGSSSGALPRPKRPSFTHAKKWC 292          
BLAST of jgi.p|Trimin1|346389 vs. uniprot
Match: A0A8K1FN60_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FN60_PYTOL)

HSP 1 Score: 71.6 bits (174), Expect = 6.270e-11
Identity = 50/163 (30.67%), Postives = 80/163 (49.08%), Query Frame = 0
Query:   18 AAKILVVGHALSGKTTLVNQLCAVGSRGASRRVSS-----TVGCTIALK--------ALGPATVIFFCDVGGHEAYKPARSTFYEGGDYDGVMLVYDLCNARSWSALPEWAEELADS----GICIAGLGHSASSLGSGLDHLEGGGGGSAQLPAVLVGNKADV 163
            A ++LVVG +  GKTTL+  +C   + G  R  +      T+GC + L          +   T I F DVGGH  Y+ +R+ FY   D  G++L++DL NARS+  L +W  E+ ++    G  ++   H  ++    L            LP +++GNK D+
Sbjct:    5 AVRVLVVGDSGVGKTTLLQGVCTSAANGVERESAKQAHRWTIGCDVHLLLHHYRDGYGMTKETYIEFVDVGGHPKYEISRAMFYH--DVQGIILMHDLSNARSFDHLRQWMTEIQETQRRKGSVLSASFHQRTADAPTLH----------SLPKLIIGNKRDL 155          
BLAST of jgi.p|Trimin1|346389 vs. uniprot
Match: A0A7S2RJ66_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RJ66_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.290e-10
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 0
Query:   19 AKILVVGHALSGKTTLVNQLCAVGSRGASRRVSSTVGCTIALKALG-----PATVIFFCDVGGHEAYKPARSTFYEGGDYDGVMLVYDLCNARSWSALPEWAEELADS 121
            A++LVVG +  GKT+LV++LC  G          TVGC + +K        PA  + F DVG H  +  +RS FY G   DGV+LVYD+ N++S++ L +W  EL  S
Sbjct:   25 ARVLVVGDSGVGKTSLVHKLC-YGE--VLNNPEWTVGCNVEVKYCPTDGDVPAGFVDFLDVGCHNNHSMSRSIFYNG--IDGVILVYDMSNSKSFTNLKKWIAELRKS 127          
BLAST of jgi.p|Trimin1|346389 vs. uniprot
Match: A0A7S2RI26_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RI26_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 5.130e-10
Identity = 54/158 (34.18%), Postives = 79/158 (50.00%), Query Frame = 0
Query:   19 AKILVVGHALSGKTTLVNQLCAVGSRGASRRVSSTVGCTIALKALG-----PATVIFFCDVGGHEAYKPARSTFYEGGDYDGVMLVYDLCNARSWSALPEWAEELADSGIC--------IAGLGHSASSLGSGLDHLEGGGGGSAQLPAVLVGNKADV 163
            A++LVVG +  GKT+LV++LC  G          TVGC + +K        PA  + F DVG H  +  +RS FY G   DGV+LVYD+ N++S++ L +W  EL  S           +       S +G    +  G  G    LP +++GNK D+
Sbjct:   25 ARVLVVGDSGVGKTSLVHKLC-YGE--VLNNPEWTVGCNVEVKYCPTDGDVPAGFVDFLDVGCHNNHSMSRSIFYNG--IDGVILVYDMSNSKSFTNLKKWIAELRKSVTKGDYSNEKRVESTIFQRSIMGQPPTNPSGDDGTICGLPVLVIGNKLDL 177          
BLAST of jgi.p|Trimin1|346389 vs. uniprot
Match: A0A6U3DMJ8_9EUKA (Hypothetical protein n=2 Tax=Lotharella TaxID=74819 RepID=A0A6U3DMJ8_9EUKA)

HSP 1 Score: 64.7 bits (156), Expect = 1.410e-8
Identity = 54/163 (33.13%), Postives = 82/163 (50.31%), Query Frame = 0
Query:   20 KILVVGHALSGKTTLVNQLCAVGSRGASRRVSS-TVGCTIALK-----ALGPATVIFFCDVGGHEAYKPARSTFYEGGDYDGVMLVYDLCNARSWSALPEWAEELAD----SGI---CIAGLGHSASSLGSGLDHLEGGGGGSAQLPAVLVGNKADVRHPSAP 169
            +ILV+G + +GKT+LV+Q+C     GA  +    TVGC   +K     A+     + F DVGG   Y+  R  FY     +G+MLV+DL N +S+  L +W +E+       GI    +    H  S+  S  +H+    G    LP ++VGNK D++    P
Sbjct:   15 RILVLGDSGAGKTSLVHQIC----NGAILKDPRWTVGCQTEVKLQTHPAMNKRFFLEFWDVGGSRKYQQTRQIFYS--QINGIMLVFDLNNKKSYLNLRKWIKEIVHVHKTKGIEEKYVYHDAHGTSTTSSYDNHVSSSLG---SLPVIVVGNKKDLQDKKNP 168          
BLAST of jgi.p|Trimin1|346389 vs. uniprot
Match: UPI001F04F7FF (rab-like protein 3 n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04F7FF)

HSP 1 Score: 63.5 bits (153), Expect = 3.780e-8
Identity = 57/170 (33.53%), Postives = 86/170 (50.59%), Query Frame = 0
Query:   12 DLDAPYAAKILVVGHALSGKTTLVNQLCAVGSRGASRRVSSTVGCTIALKAL----GPATV----IFFCDVGGHEAYKPARSTFYEGGDYDGVMLVYDLCNARSWSALPEWAEELADSGICIAGLGH---SASSLGSGLDH--------LEGGGGGSAQLPAVLVGNKAD 162
            DLD     KILVVG +  GKT+ +N +C        R  + T+GC++  K      G A V    I   D+GG  ++K +RS FY     +G++LV+DL N +S+  L +W  E+  +G   +G+G    S +SL +  D+        L G      Q+P ++VG KAD
Sbjct:    3 DLDK---VKILVVGDSGVGKTSFINLIC---HNEKLRSPAWTIGCSVETKVFEYKRGTAQVKDFFIELWDIGGSASHKCSRSIFYSS--INGLILVHDLTNRKSYCNLRKWLGEVFGAGRETSGMGSRKISRASLITDFDNEDECDPEQLAGN-----QIPILIVGTKAD 159          
BLAST of jgi.p|Trimin1|346389 vs. uniprot
Match: UPI00106AD6D7 (rab-like protein 3 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106AD6D7)

HSP 1 Score: 63.5 bits (153), Expect = 4.040e-8
Identity = 54/160 (33.75%), Postives = 81/160 (50.62%), Query Frame = 0
Query:   20 KILVVGHALSGKTTLVNQLCAVGSRGASRRVSS---TVGCTIALKALG-----PATVIFFC---DVGGHEAYKPARSTFYEGGDYDGVMLVYDLCNARSWSALPEWAEELADSGICIAGLGHSASSLGSGL------DHLEGGGGGSAQLPAVLVGNKAD 162
            K+LVVG +  GKT+LVN +C       + R+SS   T+GC++  K        P    FF    DVGG   +K +RS FY     +G++LV+DL N +S+  L +W  E+  SG  + G+    SS  S +      D  +       Q+P ++VG K+D
Sbjct:    8 KVLVVGDSGVGKTSLVNLICH------NERLSSPAWTIGCSVETKVYDYKHGTPQEKEFFIELWDVGGSANHKCSRSIFY--ASMNGLILVHDLTNRKSYLNLRKWLAEVLGSGKEMTGVASRKSSKASLIVDFDKQDEYDPEQFAGNQVPILIVGTKSD 159          
BLAST of jgi.p|Trimin1|346389 vs. uniprot
Match: A0A7S3PBC4_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PBC4_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 5.140e-8
Identity = 42/114 (36.84%), Postives = 62/114 (54.39%), Query Frame = 0
Query:   14 DAPYAAKILVVGHALSGKTTLVNQLCAVGSRGASRRVSS-TVGC-------TIALKALGPATVIFFCDVGGHEAYKPARSTFYEGGDYDGVMLVYDLCNARSWSALPEWAEELA 119
            D+    +ILVVG +  GK+ L++Q+C     G +    + TVGC       +  L+ +     I F +VGGH  +KP R  FY+    +GV+LVYD+ N +S+S L  W  ELA
Sbjct:   11 DSVEKVRILVVGDSGVGKSCLIHQIC----HGKTLSTPTWTVGCHTDVKLQSCVLEGVEKPFFIEFWEVGGHRNFKPGRQMFYQ--KMNGVILVYDMKNVKSFSNLRSWIAELA 118          
BLAST of jgi.p|Trimin1|346389 vs. uniprot
Match: C1EHG8_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EHG8_MICCC)

HSP 1 Score: 63.9 bits (154), Expect = 7.040e-8
Identity = 59/185 (31.89%), Postives = 80/185 (43.24%), Query Frame = 0
Query:   20 KILVVGHALSGKTTLVNQLCAVGSRGASRRVSS--------TVGCTIALKALG-----------PATVIF--FCDVGGHEAYKPARSTFYEGGDYDGVMLVYDLCNARSWSALPEWAEELADSG----------------ICIAGLGHSASSLGSGLDHLEGGGGGSAQLPAVLVGNKADVRHPS 167
            ++ VVG   SGKT+ V+ + A G  G SR   +        T+GC   +  +            P+   F    DVGGH  +K  R+ FY   D DGV+LV+DL   R+   L  WA E+A S                   +A +G     LG  LD     G     +PA+ VGNKAD+  PS
Sbjct:   15 RVAVVGDTGSGKTSWVHLIRANGPHGGSRGAGAASVRDQERTMGCKPEVTMVSFDEVRTTGGANPSRPYFVEMWDVGGHHEWKNLRAAFY--ADLDGVVLVHDLTRRRTLGRLARWAREIAASASFASQTPAGSETDARDAMVAAVGGKL--LGDALDGCVVHGFCGLPVPALFVGNKADIVDPS 195          
BLAST of jgi.p|Trimin1|346389 vs. uniprot
Match: UPI0009E22F28 (rab-like protein 3 n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E22F28)

HSP 1 Score: 62.4 bits (150), Expect = 1.030e-7
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 0
Query:   20 KILVVGHALSGKTTLVNQLCAVGSRGASRRVSSTVGCTIALKALG-----PATVIFFC---DVGGHEAYKPARSTFYEGGDYDGVMLVYDLCNARSWSALPEWAEELADSG 122
            KILVVG +  GKT+LV+ +C   S         T+GCT+ +K        PA   FF    DVGG  +++ +RS FY G   +G++LV+DL N +S++ L  W  E+  SG
Sbjct:    8 KILVVGDSGVGKTSLVHHICHNESLSTP---GWTIGCTVEVKLYDYKEGTPAMRSFFLEFWDVGGSASHENSRSIFYNG--VNGLILVHDLTNKKSFTNLRRWLAEVLGSG 113          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|346389 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZG16_9STRA1.610e-207100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8K1FN60_PYTOL6.270e-1130.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2RJ66_9STRA3.290e-1040.74Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S2RI26_9STRA5.130e-1034.18Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A6U3DMJ8_9EUKA1.410e-833.13Hypothetical protein n=2 Tax=Lotharella TaxID=7481... [more]
UPI001F04F7FF3.780e-833.53rab-like protein 3 n=1 Tax=Xenia sp. Carnegie-2017... [more]
UPI00106AD6D74.040e-833.75rab-like protein 3 n=1 Tax=Dendronephthya gigantea... [more]
A0A7S3PBC4_9STRA5.140e-836.84Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
C1EHG8_MICCC7.040e-831.89Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
UPI0009E22F281.030e-738.74rab-like protein 3 n=1 Tax=Orbicella faveolata Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 19..40
score: 31.33
coord: 150..163
score: 45.22
NoneNo IPR availablePFAMPF08477Roccoord: 20..120
e-value: 2.9E-7
score: 30.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 245..292
NoneNo IPR availablePANTHERPTHR24073DRAB5-RELATEDcoord: 20..166
NoneNo IPR availablePANTHERPTHR24073:SF128RAB-LIKE PROTEIN 3coord: 20..166
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 7..209
e-value: 6.8E-19
score: 69.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 16..189

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_1contigContig_1:984738..987161 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|346389mRNA_1073Tribonema minus UTEX_B_3156 mRNAContig_1 984738..987255 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|346389|estExt_Genemark1.C_Ctg_10164 ID=Trimin1|346389|estExt_Genemark1.C_Ctg_10164|Name=jgi.p|Trimin1|346389|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=293bp
MRQHLYNTVAEDLDAPYAAKILVVGHALSGKTTLVNQLCAVGSRGASRRV
SSTVGCTIALKALGPATVIFFCDVGGHEAYKPARSTFYEGGDYDGVMLVY
DLCNARSWSALPEWAEELADSGICIAGLGHSASSLGSGLDHLEGGGGGSA
QLPAVLVGNKADVRHPSAPSALAAADLLPGFKGAAAEVCALGPAAESDAA
LAPFLQAAVRHRAGRGRQRHLTTGGSRGSWEGVWSAMPHASSGSIYSDTV
MHRPTAKHIADDSDDAQPDAGSSSGALPRPKRPSFTHAKKWC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase