Trimin1|338512|MIX47275_11_56 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|338512
Unique NameTrimin1|338512|MIX47275_11_56
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length240
Homology
BLAST of jgi.p|Trimin1|338512 vs. uniprot
Match: A0A836C7Z7_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Z7_9STRA)

HSP 1 Score: 488 bits (1255), Expect = 2.170e-174
Identity = 239/239 (100.00%), Postives = 239/239 (100.00%), Query Frame = 0
Query:    1 MQPVQEQQQAAGVPTPAPQTGAAAVSNRVELLLVAIYATAAITALTCVVLIILRKVCNAYTAHDSRHTAPDAVAGGDAGERQQEVQGDGLSKAKIRAIPLVVCGSGKGVADVENPQLGHRCAICLNEFETGDVLRVVPRCNHHYHKACLDPWLESRGICPLCKQLVHPLDRDREASLSSICASEQQHRSRGNTSVNLNGSIRVDDPLHWHSTEGDVPPDAADTWSAAARFPSWYCIFYR 239
            MQPVQEQQQAAGVPTPAPQTGAAAVSNRVELLLVAIYATAAITALTCVVLIILRKVCNAYTAHDSRHTAPDAVAGGDAGERQQEVQGDGLSKAKIRAIPLVVCGSGKGVADVENPQLGHRCAICLNEFETGDVLRVVPRCNHHYHKACLDPWLESRGICPLCKQLVHPLDRDREASLSSICASEQQHRSRGNTSVNLNGSIRVDDPLHWHSTEGDVPPDAADTWSAAARFPSWYCIFYR
Sbjct:    1 MQPVQEQQQAAGVPTPAPQTGAAAVSNRVELLLVAIYATAAITALTCVVLIILRKVCNAYTAHDSRHTAPDAVAGGDAGERQQEVQGDGLSKAKIRAIPLVVCGSGKGVADVENPQLGHRCAICLNEFETGDVLRVVPRCNHHYHKACLDPWLESRGICPLCKQLVHPLDRDREASLSSICASEQQHRSRGNTSVNLNGSIRVDDPLHWHSTEGDVPPDAADTWSAAARFPSWYCIFYR 239          
BLAST of jgi.p|Trimin1|338512 vs. uniprot
Match: R0GMW7_9BRAS (RING-type domain-containing protein n=2 Tax=Capsella rubella TaxID=81985 RepID=R0GMW7_9BRAS)

HSP 1 Score: 94.7 bits (234), Expect = 3.620e-19
Identity = 57/172 (33.14%), Postives = 81/172 (47.09%), Query Frame = 0
Query:   56 VCNAYTAHDSRHTAPDAVAGGDAGERQQEVQGDGLSKAKIRAIPLVVCGSGKGVADVENPQLGHRCAICLNEFETGDVLRVVPRCNHHYHKACLDPWLESRGICPLCKQLVHPLDRDREASLSSICASEQQHRSRGNTSVNLNGS--IRVDDPLHWHSTEGDV--PPDAADT 223
            VC  YT+     T+ D   GGD           GL +  I++ P  +    KG+   +    G  CAICLNEFE  + LR++P C+H +H  C+D WL SR  CP+C+  + P     ++SL S           GNT  N+  S  +R+ D L W +T      PP +  T
Sbjct:   66 VCYKYTSTSPHGTSSDTEEGGDGEVAWIRRTSRGLDQDVIKSFPSFLYSQVKGLKIGKG---GVECAICLNEFEDDETLRLMPPCSHAFHVVCIDVWLTSRSTCPVCRASLPPKPGTEQSSLYSSLRPPDMDLETGNTRRNVLESPDVRLLDRLTWSNTNTGATRPPRSRST 234          
BLAST of jgi.p|Trimin1|338512 vs. uniprot
Match: A0A835ZK41_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK41_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.820e-18
Identity = 41/70 (58.57%), Postives = 47/70 (67.14%), Query Frame = 0
Query:  104 GSGKGVADVENPQLGHRCAICLNEFETGDVLRVVPRCNHHYHKACLDPWLESRGICPLCKQLVHPLDRDR 173
            G  +GV D+        CAICL +FE GD LRVVP C H YHKACLDPWLE++ ICPLCKQ V P+   R
Sbjct:  241 GGREGVGDL-------MCAICLADFEGGDQLRVVPHCFHQYHKACLDPWLETKAICPLCKQRVRPVPSQR 303          
BLAST of jgi.p|Trimin1|338512 vs. uniprot
Match: A0A835ZDD2_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD2_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 3.860e-16
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 0
Query:  121 CAICLNEFETGDVLRVVPRCNHHYHKACLDPWLESRGICPLCKQLVH 167
            CA+CL  FE+G++LRVVP CNH YH+ACLD WL ++G+CPLCKQ VH
Sbjct:  201 CAVCLCGFESGEMLRVVPHCNHRYHQACLDTWLATKGVCPLCKQPVH 247          
BLAST of jgi.p|Trimin1|338512 vs. uniprot
Match: ATL34_ARATH (RING-H2 finger protein ATL34 n=7 Tax=Arabidopsis thaliana TaxID=3702 RepID=ATL34_ARATH)

HSP 1 Score: 85.5 bits (210), Expect = 6.460e-16
Identity = 56/174 (32.18%), Postives = 79/174 (45.40%), Query Frame = 0
Query:   56 VCNAYTAHDSRHTAPDAVAGGDAGERQQEVQGDGLSKAKIRAIPLVVCGSGKGVADVENPQLGHRCAICLNEFETGDVLRVVPRCNHHYHKACLDPWLESRGICPLCKQLVHPLDRDREASLSS-ICASEQQHRSRGNT----SVNLNGSIRVDDPLHWHSTEG-DVPPDAADT 223
            VC  YT      T+ D   GG            GL K  I + P  +    KG+   +    G  CAICLNEFE  + LR++P C+H +H +C+D WL SR  CP+C+  + P     + SL   I   + Q     N     SV  +  +R+ D L W +  G + PP +  T
Sbjct:   66 VCYKYTNTSPHGTSSDTEEGGHGEVAFTRRTSRGLGKDVINSFPSFLYSQVKGLKIGKG---GVECAICLNEFEDEETLRLMPPCSHAFHASCIDVWLSSRSTCPVCRASLPPKPGSDQNSLYPFIRPHDNQDMDLENVTARRSVLESPDVRLLDRLSWSNNTGANTPPRSRST 236          
BLAST of jgi.p|Trimin1|338512 vs. uniprot
Match: A0A5J4NFE5_9TREM (E3 ubiquitin-protein ligase RNF13 n=2 Tax=Paragonimus TaxID=34503 RepID=A0A5J4NFE5_9TREM)

HSP 1 Score: 86.3 bits (212), Expect = 9.090e-16
Identity = 45/100 (45.00%), Postives = 61/100 (61.00%), Query Frame = 0
Query:   80 ERQQEVQGDGLSKAKIRAIPLVVCGSGKGVADVENPQLGHRCAICLNEFETGDVLRVVPRCNHHYHKACLDPWL-ESRGICPLCKQLVHPLDRDREASLS 178
            ER+Q  +   L+  ++R +P      G      ENP  GH CAICL E+E+GD LR +P CNH YH  CLDPWL + R +CP+CK++V P  R+R   L+
Sbjct:  196 ERRQRRRRRCLTARQLRRLPQTKFVKG------ENPD-GH-CAICLEEYESGDQLRTLP-CNHEYHSKCLDPWLLKGRRVCPICKRVVFPRHRNRHGILT 286          
BLAST of jgi.p|Trimin1|338512 vs. uniprot
Match: A0A5N6RI02_9ROSI (RING-type domain-containing protein n=1 Tax=Carpinus fangiana TaxID=176857 RepID=A0A5N6RI02_9ROSI)

HSP 1 Score: 82.0 bits (201), Expect = 1.360e-15
Identity = 43/115 (37.39%), Postives = 58/115 (50.43%), Query Frame = 0
Query:   89 GLSKAKIRAIPLVVCGSGKGVADVENPQLGHRCAICLNEFETGDVLRVVPRCNHHYHKACLDPWLESRGICPLCKQLVHPLDRDREASLSSICASEQQHRSRGNTSVNLNGSIRV 203
            GL K  +R IP+ + GSG  +   E       C ICL EFE G+ +RV+P+CNH +H  C+D WL S   CP C+   H L  D  +S S      +Q  S GN S      + +
Sbjct:   83 GLKKRDLRQIPVAIYGSGVNIKATE-------CPICLGEFEDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPNCR---HSL-LDHPSSSSGANQQVRQAESTGNGSAATQSGVVI 186          
BLAST of jgi.p|Trimin1|338512 vs. uniprot
Match: A0A2I4E4V2_JUGRE (RING-H2 finger protein ATL74-like n=4 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4E4V2_JUGRE)

HSP 1 Score: 82.0 bits (201), Expect = 1.360e-15
Identity = 36/83 (43.37%), Postives = 50/83 (60.24%), Query Frame = 0
Query:   89 GLSKAKIRAIPLVVCGSGKGVADVENPQLGHRCAICLNEFETGDVLRVVPRCNHHYHKACLDPWLESRGICPLCKQLV--HPL 169
            GL K  +R IP+ + GSG  +   E       CAICL EFE G+ +RV+P+CNH +H +C+D WL S   CP C+  +  HP+
Sbjct:   81 GLKKRDLRQIPVAIYGSGVNIKATE-------CAICLGEFEDGENVRVLPKCNHGFHVSCIDTWLLSHSSCPNCRHSLREHPV 156          
BLAST of jgi.p|Trimin1|338512 vs. uniprot
Match: A0A2P6QI90_ROSCH (RING-type E3 ubiquitin transferase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6QI90_ROSCH)

HSP 1 Score: 82.0 bits (201), Expect = 1.580e-15
Identity = 46/162 (28.40%), Postives = 73/162 (45.06%), Query Frame = 0
Query:   55 KVCNAYTAHDSRHTAPDAVAGGDAGERQQEVQGDGLSKAKIRAIPLVVCGSGKGVADVENPQLGHRCAICLNEFETGDVLRVVPRCNHHYHKACLDPWLESRGICPLCKQLVHPLDRDREASLSSICASEQQHRSRGNTSVNLNGSIRVDDPLHWHSTEGDV 216
            K CN  +  + R T  +     +A +   + Q  GL  A IR++P+          D E  Q    C +CL EFE G+ LR +P+CNH +H +C+D W  +   CPLC+  V+   +D    + ++  +             L GS+  +  LH+H     V
Sbjct:   34 KRCNTRSNPNHRRTLLNET---NADDPSLQFQSPGLDFAIIRSLPITQFKKRSVAEDAEEHQSNTDCPVCLGEFEEGEWLRHLPKCNHAFHISCIDTWFVAHSNCPLCRSEVYDFIQDCPIPMHTLLET-------------LRGSVIEERALHFHMLRSAV 179          
BLAST of jgi.p|Trimin1|338512 vs. uniprot
Match: M1D102_SOLTU (Ring finger protein n=1 Tax=Solanum tuberosum TaxID=4113 RepID=M1D102_SOLTU)

HSP 1 Score: 85.1 bits (209), Expect = 1.790e-15
Identity = 37/102 (36.27%), Postives = 61/102 (59.80%), Query Frame = 0
Query:   89 GLSKAKIRAIPLVVCGSGKGVADVENPQLGHRCAICLNEFETGDVLRVVPRCNHHYHKACLDPWLESRGICPLCKQLVHPLD-------RDREASLSSICAS 183
            G+ +  I ++P+   GS +G         G  CA+CLN+FE+ ++LR++P+C H +H  C+D WL++   CPLC+  V P D        +R+++ SSIC+S
Sbjct:  106 GIDRTVIESLPVFRFGSLRG-----QKAEGLECAVCLNKFESSEILRLLPKCKHAFHIECVDTWLDAHSTCPLCRYQVDPEDILLISHENERKSASSSICSS 202          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|338512 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C7Z7_9STRA2.170e-174100.00RING-type domain-containing protein n=1 Tax=Tribon... [more]
R0GMW7_9BRAS3.620e-1933.14RING-type domain-containing protein n=2 Tax=Capsel... [more]
A0A835ZK41_9STRA2.820e-1858.57RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835ZDD2_9STRA3.860e-1668.09RING-type domain-containing protein n=1 Tax=Tribon... [more]
ATL34_ARATH6.460e-1632.18RING-H2 finger protein ATL34 n=7 Tax=Arabidopsis t... [more]
A0A5J4NFE5_9TREM9.090e-1645.00E3 ubiquitin-protein ligase RNF13 n=2 Tax=Paragoni... [more]
A0A5N6RI02_9ROSI1.360e-1537.39RING-type domain-containing protein n=1 Tax=Carpin... [more]
A0A2I4E4V2_JUGRE1.360e-1543.37RING-H2 finger protein ATL74-like n=4 Tax=Juglanda... [more]
A0A2P6QI90_ROSCH1.580e-1528.40RING-type E3 ubiquitin transferase n=1 Tax=Rosa ch... [more]
M1D102_SOLTU1.790e-1536.27Ring finger protein n=1 Tax=Solanum tuberosum TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 121..162
e-value: 2.0E-6
score: 37.3
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 120..163
e-value: 9.2E-13
score: 48.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 121..163
score: 11.854899
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 76..168
e-value: 4.0E-19
score: 70.1
NoneNo IPR availablePANTHERPTHR46539E3 UBIQUITIN-PROTEIN LIGASE ATL42coord: 10..183
NoneNo IPR availableCDDcd16454RING-H2_PA-TM-RINGcoord: 121..163
e-value: 8.46671E-17
score: 69.6381
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 120..169

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_91contigContig_91:505480..507347 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|338512mRNA_13525Tribonema minus UTEX_B_3156 mRNAContig_91 505480..507347 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|338512|MIX47275_11_56 ID=Trimin1|338512|MIX47275_11_56|Name=jgi.p|Trimin1|338512|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=240bp
MQPVQEQQQAAGVPTPAPQTGAAAVSNRVELLLVAIYATAAITALTCVVL
IILRKVCNAYTAHDSRHTAPDAVAGGDAGERQQEVQGDGLSKAKIRAIPL
VVCGSGKGVADVENPQLGHRCAICLNEFETGDVLRVVPRCNHHYHKACLD
PWLESRGICPLCKQLVHPLDRDREASLSSICASEQQHRSRGNTSVNLNGS
IRVDDPLHWHSTEGDVPPDAADTWSAAARFPSWYCIFYR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD