Trimin1|336946|MIX45709_36_58 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|336946
Unique NameTrimin1|336946|MIX45709_36_58
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length271
Homology
BLAST of jgi.p|Trimin1|336946 vs. uniprot
Match: A0A836C8D7_9STRA (CMP/dCMP-type deaminase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8D7_9STRA)

HSP 1 Score: 508 bits (1307), Expect = 2.810e-181
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 0
Query:    1 LKSYGWQWDPAISVDENLLDLAFLVARNSTCLEGKVGCLLVRGLPRGPLTGLHQSLGQVCGNVIIATTNNELLRKRASDRHAEANAVALCAAKGIALEGASAYVIIPPCKNCYTLLATAGIRRIVTRAVTSERADYEDKRFPPDMLQSIEDLDIDLVKVVDTEQRIRRREKLGRDNEDWARVRDLRADKRMRRLAKNEAVRNTAVAESAVSMPATPAASGLVAPAERGHPSNGDAIAMPAALQDTQQPPLEGEGGAASAAESTEQSAAAV 270
            LKSYGWQWDPAISVDENLLDLAFLVARNSTCLEGKVGCLLVRGLPRGPLTGLHQSLGQVCGNVIIATTNNELLRKRASDRHAEANAVALCAAKGIALEGASAYVIIPPCKNCYTLLATAGIRRIVTRAVTSERADYEDKRFPPDMLQSIEDLDIDLVKVVDTEQRIRRREKLGRDNEDWARVRDLRADKRMRRLAKNEAVRNTAVAESAVSMPATPAASGLVAPAERGHPSNGDAIAMPAALQDTQQPPLEGEGGAASAAESTEQSAAAV
Sbjct:    1 LKSYGWQWDPAISVDENLLDLAFLVARNSTCLEGKVGCLLVRGLPRGPLTGLHQSLGQVCGNVIIATTNNELLRKRASDRHAEANAVALCAAKGIALEGASAYVIIPPCKNCYTLLATAGIRRIVTRAVTSERADYEDKRFPPDMLQSIEDLDIDLVKVVDTEQRIRRREKLGRDNEDWARVRDLRADKRMRRLAKNEAVRNTAVAESAVSMPATPAASGLVAPAERGHPSNGDAIAMPAALQDTQQPPLEGEGGAASAAESTEQSAAAV 270          
BLAST of jgi.p|Trimin1|336946 vs. uniprot
Match: C1MT26_MICPC (Cytidine deaminase n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MT26_MICPC)

HSP 1 Score: 127 bits (319), Expect = 7.640e-32
Identity = 86/205 (41.95%), Postives = 116/205 (56.59%), Query Frame = 0
Query:    1 LKSYGWQWDPAISVDENLLDLAFLVARNSTCLEGKVGCLLVRGLPRGPLTGLHQSLGQVCGNVIIATTNNELLRKRASDRHAEANAVALCAAKGIALEG--------ASAYVIIPPCKNCYTLLATAGIRRIVTRAVTSERADYEDKRFPPDMLQSIEDLDIDLVKVVDTEQRIRRREKLGRDNEDWARVRDLRAD-KRMRRLAK 196
            L  YGW+W P+ +VDEN +DL  LV+RNSTC +G +GC LVRG+ RG   G  +      G+V++ T N+ L     SD HAEANAVA  AA+GI+L G         S YV   PC +CY LLA+AG+ RIV   +     D  D R       S + LD++ V   DTE+R   R  LG+ +E+   +R  R + KR++R  K
Sbjct:   39 LSRYGWRWRPSDTVDENYVDLVSLVSRNSTCADGHMGCALVRGIARG---GGGERRETAVGDVVLTTINSPLFGALRSDCHAEANAVAEAAARGISLRGNGDDATTVTSCYVTRAPCLSCYKLLASAGVGRIVAPRLM----DSADARA------SAKKLDVECVACEDTEERRAHRLGLGKTHENMDEIRARREERKRLKREGK 230          
BLAST of jgi.p|Trimin1|336946 vs. uniprot
Match: R1DJG1_EMIHU (CMP/dCMP-type deaminase domain-containing protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DJG1_EMIHU)

HSP 1 Score: 123 bits (308), Expect = 8.360e-30
Identity = 89/247 (36.03%), Postives = 117/247 (47.37%), Query Frame = 0
Query:    1 LKSYGWQWDPAISVDENLLDLAFLVARNSTCLEGKVGCLLVRGLPRG------------PLTGLHQSLGQ------------------------VCGNVIIATTNNELLRKRASDRHAEANAVALCAAKGIALEGASAYVIIPPCKNCYTLLATAGIRRIVTRAVTSERADYEDKRFPPDMLQSIEDLDIDLVKVVDTEQRIRRREKLGRDNEDWARVRDLRADKRMRRLAKNEAVRNTAVAESAVS 211
            L  YGW W    SVD NLLDLA+LVARNSTC +G +GC+L RG+P G            P+  +  +                           +C +V++  TN  L     SD HAEA AV+ CA +GI   G S YV   PC  CY LLA AG+ RIV            ++    D   S   L I+ + + D+ QR   RE LG  NED+ RVR LR +++  RL K  +    + A +A S
Sbjct:   27 LNLYGWSWSSERSVDANLLDLAYLVARNSTCKDGHMGCVLARGVPNGRGGETAAALARDPVNSVAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXLCPSVVLCATNAPLFGAHRSDCHAEALAVSECARRGIGTAGLSIYVTRTPCGPCYKLLAAAGVARIVAP---------NERMASADCAASAARLGIEYIWLPDSPQRAAEREALGSANEDYERVRALREERK--RLRKERSYGRKSCARTAAS 262          
BLAST of jgi.p|Trimin1|336946 vs. uniprot
Match: A0A7S3RZ63_EMIHU (Hypothetical protein n=3 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RZ63_EMIHU)

HSP 1 Score: 106 bits (264), Expect = 4.870e-24
Identity = 64/161 (39.75%), Postives = 79/161 (49.07%), Query Frame = 0
Query:    1 LKSYGWQWDPAISVDENLLDLAFLVARNSTCLEGKVGCLLVRGLPRG------------PLTGLHQSLGQ------------------------VCGNVIIATTNNELLRKRASDRHAEANAVALCAAKGIALEGASAYVIIPPCKNCYTLLATAGIRRIV 125
            L  YGW W    SVD NLLDLA+LVARNSTC +G +GC+L RG+P G            P+  +  +                           +C +V++  TN  L     SD HAEA AV+ CA +GI   G S YV   PC  CY LLA AG+ RIV
Sbjct:   36 LNLYGWSWSSERSVDANLLDLAYLVARNSTCKDGHMGCVLARGVPNGRGGETAAALARDPVNSVAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXLCPSVVLCATNAPLFGAHRSDCHAEALAVSECARRGIGTAGLSIYVTRTPCGPCYKLLAAAGVARIV 196          
BLAST of jgi.p|Trimin1|336946 vs. uniprot
Match: A0A7S0CSB4_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CSB4_9EUKA)

HSP 1 Score: 98.6 bits (244), Expect = 4.190e-21
Identity = 52/127 (40.94%), Postives = 73/127 (57.48%), Query Frame = 0
Query:    1 LKSYGWQWDPAISVDENLLDLAFLVARNSTCLEGKVGCLLVRGLPRGPLTGLHQSLGQVCGNVIIATTNNELLRKRASDRHAEANAVALCAAKGIALEGASAYVIIPPCKNCYTLLATAGIRRIVTR 127
            LK++ W+ D  +S DENL+ LA +VARNS C+ G +GC+L +                    +I    N+ L    ASD HAE NA+ +CA K  + +GA+ YV +PPC+ C+T L  +GI RIVTR
Sbjct:   24 LKTWEWKRDEKLSQDENLMRLALVVARNSDCIGGHMGCILTQQ-----------------NKIIAKAVNSSLFDAYASDIHAEVNALGVCARKQRSTQGATCYVTMPPCRKCFTCLVASGITRIVTR 133          
BLAST of jgi.p|Trimin1|336946 vs. uniprot
Match: A0A813HT72_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HT72_POLGL)

HSP 1 Score: 99.0 bits (245), Expect = 7.530e-21
Identity = 66/180 (36.67%), Postives = 93/180 (51.67%), Query Frame = 0
Query:    1 LKSYGWQWDPAISVDENLLDLAFLVARNSTCLEGKVGCLLVRGLPRGPLTGLHQSLGQVCGNVIIATTNNELLRKRA----SDRHAEANAVALCAAKGIALEGASAYVIIPPCKNCYTLLATAGIRRIVTRAVTSERADYEDKRFPPDMLQSIEDLDIDLVKVVDTEQRIRRREKLGRDN 176
            ++S+GW   P +S DEN +DLA L+ARNS C  G +GC                ++    G VI    N  L    A    SD HAE NA+ LCA +G + EG++ YV +PPCK C+  +  AGIRRIVTR    +    +D +   D+      L I +  V DTE R +R ++L  ++
Sbjct:   25 IQSFGWAPLPELSGDENGMDLALLLARNSRCKAGSMGC----------------AIADPGGTVIAGHVNGPLWEPNAKRPCSDLHAEVNAIGLCARRGFSTEGSTLYVTMPPCKRCFMQITAAGIRRIVTR----KEIMAQDAK---DVTSVARRLGIAVAVVADTEVRRKRLDRLANES 181          
BLAST of jgi.p|Trimin1|336946 vs. uniprot
Match: A0A7R9ZXB1_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7R9ZXB1_9DINO)

HSP 1 Score: 96.3 bits (238), Expect = 1.750e-20
Identity = 54/124 (43.55%), Postives = 73/124 (58.87%), Query Frame = 0
Query:    5 GWQWDPAISVDENLLDLAFLVARNSTCLEGKVGCLLVRGLPRGPLTGLHQSLGQVCGNVIIATTNNELLRKR-ASDRHAEANAVALCAAKGIALEGASAYVIIPPCKNCYTLLATAGIRRIVTR 127
            GW   P  S DEN +DLA L+ARNS C +G +GC +              + G V    I +     L  KR +SD HAE NA+A C  +G++ +G +AY+ +PPCK C+T+LATAGI+RIV R
Sbjct:   28 GWSPRPEASGDENGIDLAVLLARNSKCRQGSMGCAIA------------SAAGVVVAIGINSPFWGSLSAKRPSSDVHAEVNAMAACTRRGVSTQGGTAYITMPPCKRCFTVLATAGIKRIVMR 139          
BLAST of jgi.p|Trimin1|336946 vs. uniprot
Match: A0A0L0HDW3_SPIPD (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HDW3_SPIPD)

HSP 1 Score: 95.5 bits (236), Expect = 8.410e-20
Identity = 54/134 (40.30%), Postives = 80/134 (59.70%), Query Frame = 0
Query:    1 LKSYGWQWDPAISVDENLLDLAFLVARNSTCLEGKVGCLLVRGLPRGPLTGLHQSLGQVCGNVIIATTNNELL-------RKRASDRHAEANAVALCAAKGIALEGASAYVIIPPCKNCYTLLATAGIRRIVTR 127
            + +Y W++DP +S D+N +DLA LVARNS   +G +G +L+      P + L+ +      N+++  TN  +         K +++ HAEANAV+ CA +GI   GA AY+  PPCK C+ LL  AGI+RIV R
Sbjct:   46 INTYDWRYDPDMSFDDNYIDLACLVARNSLSQKGHMGAVLIE-----PPSTLNTA-----SNILLLATNVPVYPPPPSKNMKASAEIHAEANAVSSCARQGIKTSGAWAYITFPPCKECFMLLVYAGIKRIVFR 169          
BLAST of jgi.p|Trimin1|336946 vs. uniprot
Match: A0A507EQ37_9FUNG (CMP/dCMP-type deaminase domain-containing protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507EQ37_9FUNG)

HSP 1 Score: 95.1 bits (235), Expect = 1.130e-19
Identity = 53/134 (39.55%), Postives = 76/134 (56.72%), Query Frame = 0
Query:    1 LKSYGWQWDPAISVDENLLDLAFLVARNSTCLEGKVGCLLVRGLPRGPLTGLHQSLGQVCGNVIIATTNNELL-------RKRASDRHAEANAVALCAAKGIALEGASAYVIIPPCKNCYTLLATAGIRRIVTR 127
            + +Y W+++P IS D+N +DLA LVARNS   +G +G +L+R            S      N+++  TN  +         K +++ HAEANAV+ C  +GI   GA AY+  PPCK C+ LL  AGI+RIV R
Sbjct:   45 INTYDWRYEPDISFDDNYIDLACLVARNSLSQKGHMGAVLIR----------PPSTVNAASNILMLATNVPVYPPPPLKNMKASAEIHAEANAVSSCTRQGIKASGAWAYITFPPCKECFMLLVYAGIKRIVFR 168          
BLAST of jgi.p|Trimin1|336946 vs. uniprot
Match: A0A812J8Q4_9DINO (ComEB protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812J8Q4_9DINO)

HSP 1 Score: 94.7 bits (234), Expect = 1.370e-19
Identity = 66/176 (37.50%), Postives = 90/176 (51.14%), Query Frame = 0
Query:    1 LKSYGWQWDPAISVDENLLDLAFLVARNSTCLEGKVGCLLVRGLPRGPLTGLHQSLGQVCGNVIIATTNNEL----LRKRASDRHAEANAVALCAAKGIALEGASAYVIIPPCKNCYTLLATAGIRRIVTRAVTSERADYEDKRFPPDMLQSIEDLDIDLVKVVDTEQRIRRREKL 172
            ++S+GW     +S D N +DLA L+ARNS+C  G +GC                ++    G +I    N  +     ++ ASD HAE NAV  CA  G A EG+S YV +PPCK C+  L  AG+RRIVTR    E    + K    D+  +   LDI +  V DT +R  R +KL
Sbjct:   21 IQSFGWTPLEELSGDSNGIDLALLLARNSSCKAGSMGC----------------AIADKSGRIIAGHVNGPVWEPNAKRPASDLHAEVNAVGRCARLGRATEGSSVYVTMPPCKRCFMALIAAGVRRIVTR---KEFLTQDSK----DIQTAARRLDIAVKVVSDTAERRERLDKL 173          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|336946 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8D7_9STRA2.810e-181100.00CMP/dCMP-type deaminase domain-containing protein ... [more]
C1MT26_MICPC7.640e-3241.95Cytidine deaminase n=1 Tax=Micromonas pusilla (str... [more]
R1DJG1_EMIHU8.360e-3036.03CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A7S3RZ63_EMIHU4.870e-2439.75Hypothetical protein n=3 Tax=Emiliania huxleyi Tax... [more]
A0A7S0CSB4_9EUKA4.190e-2140.94Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A813HT72_POLGL7.530e-2136.67Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A7R9ZXB1_9DINO1.750e-2043.55Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A0L0HDW3_SPIPD8.410e-2040.30CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A507EQ37_9FUNG1.130e-1939.55CMP/dCMP-type deaminase domain-containing protein ... [more]
A0A812J8Q4_9DINO1.370e-1937.50ComEB protein n=1 Tax=Symbiodinium natans TaxID=87... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.140.10Cytidine Deaminase, domain 2coord: 8..171
e-value: 2.0E-19
score: 71.7
NoneNo IPR availablePIRSRPIRSR006769-1PIRSR006769-1coord: 75..128
e-value: 9.7E-4
score: 16.0
NoneNo IPR availablePIRSRPIRSR006769-3PIRSR006769-3coord: 75..128
e-value: 9.7E-4
score: 16.0
NoneNo IPR availablePIRSRPIRSR006019-2PIRSR006019-2coord: 12..137
e-value: 1.2E-20
score: 71.4
NoneNo IPR availablePIRSRPIRSR006019-1PIRSR006019-1coord: 12..137
e-value: 1.2E-20
score: 71.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 218..270
IPR002125Cytidine and deoxycytidylate deaminase domainPFAMPF00383dCMP_cyt_deam_1coord: 14..126
e-value: 1.9E-13
score: 50.1
IPR002125Cytidine and deoxycytidylate deaminase domainPROSITEPS51747CYT_DCMP_DEAMINASES_2coord: 13..149
score: 10.605997
IPR016192APOBEC/CMP deaminase, zinc-bindingPROSITEPS00903CYT_DCMP_DEAMINASES_1coord: 81..116
IPR016193Cytidine deaminase-likeSUPERFAMILY53927Cytidine deaminase-likecoord: 11..132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_86contigContig_86:192442..195671 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|336946mRNA_13677Tribonema minus UTEX_B_3156 mRNAContig_86 192378..195671 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|336946|MIX45709_36_58 ID=Trimin1|336946|MIX45709_36_58|Name=jgi.p|Trimin1|336946|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=271bp
LKSYGWQWDPAISVDENLLDLAFLVARNSTCLEGKVGCLLVRGLPRGPLT
GLHQSLGQVCGNVIIATTNNELLRKRASDRHAEANAVALCAAKGIALEGA
SAYVIIPPCKNCYTLLATAGIRRIVTRAVTSERADYEDKRFPPDMLQSIE
DLDIDLVKVVDTEQRIRRREKLGRDNEDWARVRDLRADKRMRRLAKNEAV
RNTAVAESAVSMPATPAASGLVAPAERGHPSNGDAIAMPAALQDTQQPPL
EGEGGAASAAESTEQSAAAV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002125CMP_dCMP_dom
IPR016192APOBEC/CMP_deaminase_Zn-bd
IPR016193Cytidine_deaminase-like