Trimin1|336780|MIX45543_23_49 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|336780
Unique NameTrimin1|336780|MIX45543_23_49
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length530
Homology
BLAST of jgi.p|Trimin1|336780 vs. uniprot
Match: A0A836C8Q5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Q5_9STRA)

HSP 1 Score: 1060 bits (2740), Expect = 0.000e+0
Identity = 529/529 (100.00%), Postives = 529/529 (100.00%), Query Frame = 0
Query:    1 MHEIRPCTPEPEPVHVEHIPDPTLCFLEADLDEGLVVTANGYRIKTLGGGKEHRHDGAPRVILGLAPLISSEVRTQTMERTAGSVALTDSATVLHNGAELPNFNSIDLQHRQFEKGDAVSFGFDRAEGTVEIGKNGVLLGRVTLSDGLLPDLHPAVTICSARADELLDAKAAALSSKPLPNPSATFNRLCKTVEGVVVEGPHPYPSSMKHTAFVTVPEAACVALVFDGVCNATAGDARVTIWLDEWRTQRLGPPDGYKCLAGDSHRTAPFHGTVLEQSTGLPGMGNIPPLFVPQASFLVTFHADRWVGQATDGADWGWRVVAYHCDSEQHGLALWQQAREHCHRAAALNAPAPPPRHGETALHVAARAGNHAAVTCLCSSGGADLVNARWQSGGGGGTALHEAAGVGACACAAALIAAGADVAVADDCGETALHVAARYGYASLTKLLLQATSDHGATLLALRNTKGKTALQLVPPGCHPLIALLTPAVKGKKEAHYRSPIRGSRLKVPGSRGSVGVGRAPVSQSNLSA 529
            MHEIRPCTPEPEPVHVEHIPDPTLCFLEADLDEGLVVTANGYRIKTLGGGKEHRHDGAPRVILGLAPLISSEVRTQTMERTAGSVALTDSATVLHNGAELPNFNSIDLQHRQFEKGDAVSFGFDRAEGTVEIGKNGVLLGRVTLSDGLLPDLHPAVTICSARADELLDAKAAALSSKPLPNPSATFNRLCKTVEGVVVEGPHPYPSSMKHTAFVTVPEAACVALVFDGVCNATAGDARVTIWLDEWRTQRLGPPDGYKCLAGDSHRTAPFHGTVLEQSTGLPGMGNIPPLFVPQASFLVTFHADRWVGQATDGADWGWRVVAYHCDSEQHGLALWQQAREHCHRAAALNAPAPPPRHGETALHVAARAGNHAAVTCLCSSGGADLVNARWQSGGGGGTALHEAAGVGACACAAALIAAGADVAVADDCGETALHVAARYGYASLTKLLLQATSDHGATLLALRNTKGKTALQLVPPGCHPLIALLTPAVKGKKEAHYRSPIRGSRLKVPGSRGSVGVGRAPVSQSNLSA
Sbjct:    1 MHEIRPCTPEPEPVHVEHIPDPTLCFLEADLDEGLVVTANGYRIKTLGGGKEHRHDGAPRVILGLAPLISSEVRTQTMERTAGSVALTDSATVLHNGAELPNFNSIDLQHRQFEKGDAVSFGFDRAEGTVEIGKNGVLLGRVTLSDGLLPDLHPAVTICSARADELLDAKAAALSSKPLPNPSATFNRLCKTVEGVVVEGPHPYPSSMKHTAFVTVPEAACVALVFDGVCNATAGDARVTIWLDEWRTQRLGPPDGYKCLAGDSHRTAPFHGTVLEQSTGLPGMGNIPPLFVPQASFLVTFHADRWVGQATDGADWGWRVVAYHCDSEQHGLALWQQAREHCHRAAALNAPAPPPRHGETALHVAARAGNHAAVTCLCSSGGADLVNARWQSGGGGGTALHEAAGVGACACAAALIAAGADVAVADDCGETALHVAARYGYASLTKLLLQATSDHGATLLALRNTKGKTALQLVPPGCHPLIALLTPAVKGKKEAHYRSPIRGSRLKVPGSRGSVGVGRAPVSQSNLSA 529          
BLAST of jgi.p|Trimin1|336780 vs. uniprot
Match: D7FQ61_ECTSI (Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ61_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.370e-24
Identity = 105/305 (34.43%), Postives = 141/305 (46.23%), Query Frame = 0
Query:  181 NPSATFNRLCKTVEGVVVEGPHPYPSSMKHTAFVTVPEAACVALVFDGVCNATAGDARVTIWLDEWRTQRLGPPDGYKCLAGDSHRTAPFHGTVLEQSTGLPGMGNIPPLFVPQASFLVTFHADRWVGQATDGADWGWRVVAYHCDSEQHGLALWQQAREHCHRAAALNAPAPPPRHGETALHVAARAGNHAAVTCLCSSGGADLVNARWQSGGGGGTALHEAAGVGACACAAALIAAGADVAVADDCGETALHVAARYGYASLTKLLLQATSDHGATLLALRNTKGKTALQLVPPGCHPLIALL 485
            +PS  F++LC+ VEGVVVE  HPYP  ++      V  A    + FD   NAT G  +V +     R  +L  P G            P++     ++  LPG+    P+ V  +S LVTF A  W G A  G D+GWR+V +  D + H  AL  +A     RA A++A      HGET LHVA+  GN  AV  L S   AD  +A   SG    T LHEAA  G+ A    L+ + A+V   +  G+                  L   SD     +A RN  G   +++VP  C  LIALL
Sbjct:   78 DPSEPFDQLCRRVEGVVVESRHPYPKGVRQDIEAYVANADSFYVAFDAASNATIGMGKVALQEFNARDPKLFFPRG------------PYNVDTSGEAR-LPGVDGERPMRVQGSSVLVTFSASYWTGVAPAGEDYGWRLVCFTADDDDHAKALVSEAERAADRAEAVDAVN---THGETCLHVASFEGNVPAVRYLLSVD-ADPNSAHSASG--YNTPLHEAARGGSLAVTRLLLKSSANVLAVNSHGDHXXXXXXXXXXXXXXXXXLAHDSDWAT--VAARNHAGLRPVEVVP-ACSALIALL 360          
BLAST of jgi.p|Trimin1|336780 vs. uniprot
Match: A0A6H5KVI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI9_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.220e-11
Identity = 75/217 (34.56%), Postives = 102/217 (47.00%), Query Frame = 0
Query:  269 PFHGTVLEQSTGLPGMGNIPPLFVPQASFLVTFHADRWVGQATDGADWGWRVVAYHCDSEQHGLALWQQAREHCHRAAALNAPAPPPRHGETALHVAARAGNHAAVTCLCSSGGADLVNARWQSGGGGGTALHEAAGVGACACAAALIAAGADVAVADDCGETALHVAARYGYASLTKLLLQATSDHGATLLALRNTKGKTALQLVPPGCHPLIALL 485
            P++G    ++  LPG+    P+ V  +S LVTF A  W G A  G D+GWR+V +  D + H  AL  +A+    RA A++A       GET LHVA+  GN  AV  L S   AD  +A   SG    T LHEAA  G+ A    L+ + A+V   +  G+                      SD     +A RN  G   +++VP  C  LIALL
Sbjct:   24 PYNGDTSSEAR-LPGVDGERPMRVQGSSVLVTFSASYWTGVAPAGEDYGWRLVCFTADDDDHAKALVSEAKRAADRAEAVDAVN---TLGETCLHVASFEGNVPAVRYLLSID-ADPNSAHSASG--YNTPLHEAARGGSLAVTRLLLKSSANVLTVNSHGDHXXXXXXXXXXXXXXXXXXXHDSDWAT--VAARNHAGLRPVEVVP-ACSALIALL 230          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|336780 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836C8Q5_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FQ61_ECTSI1.370e-2434.43Chain A, Crystal Structure Of The Bard1 Ankyrin Re... [more]
A0A6H5KVI9_9PHAE1.220e-1134.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 428..457
e-value: 0.062
score: 22.4
coord: 357..387
e-value: 0.081
score: 22.0
coord: 395..424
e-value: 21.0
score: 14.0
IPR002110Ankyrin repeatPFAMPF12796Ank_2coord: 357..425
e-value: 1.1E-7
score: 32.3
IPR002110Ankyrin repeatPFAMPF00023Ankcoord: 429..461
e-value: 4.3E-4
score: 20.6
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 428..454
score: 9.6979
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 395..427
score: 9.88487
IPR043136B30.2/SPRY domain superfamilyGENE3D2.60.120.920coord: 43..166
e-value: 2.8E-5
score: 25.9
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 315..488
e-value: 4.0E-25
score: 90.4
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 356..474
NoneNo IPR availablePANTHERPTHR24203ANKYRIN REPEAT FAMILY PROTEINcoord: 341..473
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 428..454
score: 9.675228
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 395..427
score: 8.534378

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_85contigContig_85:161274..168527 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|336780mRNA_12169Tribonema minus UTEX_B_3156 mRNAContig_85 161274..168527 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|336780|MIX45543_23_49 ID=Trimin1|336780|MIX45543_23_49|Name=jgi.p|Trimin1|336780|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=530bp
MHEIRPCTPEPEPVHVEHIPDPTLCFLEADLDEGLVVTANGYRIKTLGGG
KEHRHDGAPRVILGLAPLISSEVRTQTMERTAGSVALTDSATVLHNGAEL
PNFNSIDLQHRQFEKGDAVSFGFDRAEGTVEIGKNGVLLGRVTLSDGLLP
DLHPAVTICSARADELLDAKAAALSSKPLPNPSATFNRLCKTVEGVVVEG
PHPYPSSMKHTAFVTVPEAACVALVFDGVCNATAGDARVTIWLDEWRTQR
LGPPDGYKCLAGDSHRTAPFHGTVLEQSTGLPGMGNIPPLFVPQASFLVT
FHADRWVGQATDGADWGWRVVAYHCDSEQHGLALWQQAREHCHRAAALNA
PAPPPRHGETALHVAARAGNHAAVTCLCSSGGADLVNARWQSGGGGGTAL
HEAAGVGACACAAALIAAGADVAVADDCGETALHVAARYGYASLTKLLLQ
ATSDHGATLLALRNTKGKTALQLVPPGCHPLIALLTPAVKGKKEAHYRSP
IRGSRLKVPGSRGSVGVGRAPVSQSNLSA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR043136B30.2/SPRY_sf
IPR036770Ankyrin_rpt-contain_sf