Trimin1|335497|MIX44260_19_76 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|335497
Unique NameTrimin1|335497|MIX44260_19_76
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length306
Homology
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BLAST of jgi.p|Trimin1|335497 vs. uniprot
Match: A0A835YU21_9STRA (F-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU21_9STRA)

HSP 1 Score: 603 bits (1554), Expect = 9.410e-218
Identity = 305/305 (100.00%), Postives = 305/305 (100.00%), Query Frame = 0 
Query:    1 MNSSTIEPSTERERTAEGIEPAAALLQLAARTFIEAGFRPVTKEPWPTSSDAAGRFTSIPLASPDGSQITLAAVTMFNNLMLHVLCGDGTRHSMQLDTRAWRPDGSRDAAFSYRMQQSLVLPVSPFMVAPFADLTGLPADAKESLLSYLPATSLGQLACTSSPYRAAVTGADSVWLALTVRDFKSQQLRGFKVAAGSSADGSAPLSPMRRYILLFLQRRRGEEEARAWRAAHERASRDEAMRVYPYFSLGGPGAADFDPDLPPRNWGAGLPPGPGFLVGGGGGGDFTDDPQIVHPVHPGGRVLLA 305
            MNSSTIEPSTERERTAEGIEPAAALLQLAARTFIEAGFRPVTKEPWPTSSDAAGRFTSIPLASPDGSQITLAAVTMFNNLMLHVLCGDGTRHSMQLDTRAWRPDGSRDAAFSYRMQQSLVLPVSPFMVAPFADLTGLPADAKESLLSYLPATSLGQLACTSSPYRAAVTGADSVWLALTVRDFKSQQLRGFKVAAGSSADGSAPLSPMRRYILLFLQRRRGEEEARAWRAAHERASRDEAMRVYPYFSLGGPGAADFDPDLPPRNWGAGLPPGPGFLVGGGGGGDFTDDPQIVHPVHPGGRVLLA
Sbjct:    1 MNSSTIEPSTERERTAEGIEPAAALLQLAARTFIEAGFRPVTKEPWPTSSDAAGRFTSIPLASPDGSQITLAAVTMFNNLMLHVLCGDGTRHSMQLDTRAWRPDGSRDAAFSYRMQQSLVLPVSPFMVAPFADLTGLPADAKESLLSYLPATSLGQLACTSSPYRAAVTGADSVWLALTVRDFKSQQLRGFKVAAGSSADGSAPLSPMRRYILLFLQRRRGEEEARAWRAAHERASRDEAMRVYPYFSLGGPGAADFDPDLPPRNWGAGLPPGPGFLVGGGGGGDFTDDPQIVHPVHPGGRVLLA 305
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|335497 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YU21_9STRA9.410e-218100.00F-box domain-containing protein n=1 Tax=Tribonema ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPROSITEPS50181FBOXcoord: 131..178
score: 8.83511
IPR036047F-box-like domain superfamilySUPERFAMILY81383F-box domaincoord: 133..191

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_8contigContig_8:1391277..1393435 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|335497mRNA_2862Tribonema minus UTEX_B_3156 mRNAContig_8 1391277..1393542 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|335497|MIX44260_19_76 ID=Trimin1|335497|MIX44260_19_76|Name=jgi.p|Trimin1|335497|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=306bp
MNSSTIEPSTERERTAEGIEPAAALLQLAARTFIEAGFRPVTKEPWPTSS
DAAGRFTSIPLASPDGSQITLAAVTMFNNLMLHVLCGDGTRHSMQLDTRA
WRPDGSRDAAFSYRMQQSLVLPVSPFMVAPFADLTGLPADAKESLLSYLP
ATSLGQLACTSSPYRAAVTGADSVWLALTVRDFKSQQLRGFKVAAGSSAD
GSAPLSPMRRYILLFLQRRRGEEEARAWRAAHERASRDEAMRVYPYFSLG
GPGAADFDPDLPPRNWGAGLPPGPGFLVGGGGGGDFTDDPQIVHPVHPGG
RVLLA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
IPR036047F-box-like_dom_sf