Trimin1|160757|e_gw1.14.39.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|160757
Unique NameTrimin1|160757|e_gw1.14.39.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length189
Homology
BLAST of jgi.p|Trimin1|160757 vs. uniprot
Match: A0A835ZIK7_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIK7_9STRA)

HSP 1 Score: 372 bits (956), Expect = 1.690e-130
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0
Query:    1 MPLRSAAAAVTRMAVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDPVFSNPRPLAALSQILAERPVAFWQIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPFGDGSGFF 188
            MPLRSAAAAVTRMAVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDPVFSNPRPLAALSQILAERPVAFWQIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPFGDGSGFF
Sbjct:    1 MPLRSAAAAVTRMAVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDPVFSNPRPLAALSQILAERPVAFWQIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPFGDGSGFF 188          
BLAST of jgi.p|Trimin1|160757 vs. uniprot
Match: W7U405_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U405_9STRA)

HSP 1 Score: 245 bits (625), Expect = 8.280e-80
Identity = 121/177 (68.36%), Postives = 146/177 (82.49%), Query Frame = 0
Query:   12 RMAVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDPVFSNPRPLAALSQILAERPVAFWQIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPFGDGSGFF 188
            RMAV +M+G+D+ET+GV+DPL L+KD+ +L++ R +ELKHGRVAMLA LG LVQSF HLPD VFSNPRPLAAL+Q+ +ERPVAFWQIFLA+GA EL+IGKQD  N+APGD+  FG    P D +++  +QL+ELKNGRLAM+A IG FVQE LTGQGPIEQL  GH SPFGDG G F
Sbjct:   31 RMAVNEMIGSDVETNGVFDPLGLAKDEASLYRSRLIELKHGRVAMLACLGTLVQSFYHLPDEVFSNPRPLAALAQVYSERPVAFWQIFLAIGAIELTIGKQDTANRAPGDVG-FGAAFIPDDAEDFAALQLKELKNGRLAMMAIIGQFVQEKLTGQGPIEQLLEGHFSPFGDGQGAF 206          
BLAST of jgi.p|Trimin1|160757 vs. uniprot
Match: A0A835ZAI4_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAI4_9STRA)

HSP 1 Score: 240 bits (613), Expect = 7.700e-78
Identity = 118/180 (65.56%), Postives = 141/180 (78.33%), Query Frame = 0
Query:    9 AVTRMAVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDPVFSNPRPLAALSQILAERPVAFWQIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPFGDGSGFF 188
            AVTRM+V+DM+G D+ET G++DPL  SKD+ +LF+ R VELKHGR+ MLAT GVLVQ++ HLPD VFSNPRP+ AL Q+L +RPVA  QI LA+G  EL+ G QDY NKAPGD+  FGD  KP D  E  ++QL+ELKNGRLAM+  +GM VQE LT QGPIEQL VGH SPFGDG GFF
Sbjct:   37 AVTRMSVEDMVGIDVETGGLFDPLGFSKDEASLFRRRAVELKHGRICMLATFGVLVQTYVHLPDAVFSNPRPIGALLQVLDQRPVAAIQILLAIGLLELTAGAQDYANKAPGDLGRFGDAFKPDDAGELAELQLKELKNGRLAMMGIMGMLVQEGLTKQGPIEQLLVGHTSPFGDGQGFF 216          
BLAST of jgi.p|Trimin1|160757 vs. uniprot
Match: D5KBP8_ELYCH (Light harvesting complex protein 3 (Fragment) n=4 Tax=Eukaryota TaxID=2759 RepID=D5KBP8_ELYCH)

HSP 1 Score: 225 bits (574), Expect = 6.650e-73
Identity = 107/147 (72.79%), Postives = 122/147 (82.99%), Query Frame = 0
Query:   29 WDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDPVFSNPRPLAALSQILAERPVAFWQIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQV 175
            WDPL  SKD+ +LF+ R VELKHGR+ MLATLGV VQ+  HLPDPVFSNPRP+ AL Q+ AERP+A WQI LA+GA ELSIGKQDYENKAPGD+ +FGDF KPSD  EWEK+QLRELKNGRLAM+A +GM VQE LT QGP+EQ  V
Sbjct:    1 WDPLGFSKDEASLFRRRVVELKHGRICMLATLGVFVQNSIHLPDPVFSNPRPIGALLQVFAERPIAIWQIILAIGAIELSIGKQDYENKAPGDLGSFGDFAKPSDPIEWEKVQLRELKNGRLAMMAIMGMLVQEGLTKQGPLEQFAV 147          
BLAST of jgi.p|Trimin1|160757 vs. uniprot
Match: W7TRI0_9STRA (Light-harvesting protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TRI0_9STRA)

HSP 1 Score: 224 bits (570), Expect = 6.840e-72
Identity = 112/176 (63.64%), Postives = 135/176 (76.70%), Query Frame = 0
Query:   13 MAVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDPVFSNPRPLAALSQILAERPVAFWQIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPFGDGSGFF 188
            M+  DM+G D+ET G++DPL  SKD+ +L+KYR+VELKHGRVAMLA LG LVQS+ HLPD VFSNPRPL AL Q+L+ERP+A  QI +A+   E++ GKQD E  APG +  FG+  KP  E E   +QL+ELKNGRLAMVA IG +VQE LTGQGPIEQ+  GHISPFGDG G F
Sbjct:    1 MSASDMIGIDVETGGLFDPLGFSKDEQSLYKYRQVELKHGRVAMLACLGTLVQSYTHLPDDVFSNPRPLGALGQLLSERPLAILQIVIAITLIEVTSGKQDPE-LAPGQLGRFGEAFKPEGEAEMAAVQLKELKNGRLAMVAIIGQWVQELLTGQGPIEQITSGHISPFGDGQGLF 175          
BLAST of jgi.p|Trimin1|160757 vs. uniprot
Match: W7TXE6_9STRA (Light harvesting complex protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXE6_9STRA)

HSP 1 Score: 221 bits (563), Expect = 2.500e-70
Identity = 107/175 (61.14%), Postives = 135/175 (77.14%), Query Frame = 0
Query:   14 AVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDPVFSNPRPLAALSQILAERPVAFWQIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPFGDGSGFF 188
            +V D++GAD ET G+WDPL LS+++G+L KYRE ELKHGRVAM A LG+ VQ   HLPDPVFSNPRPLAAL Q+  +RP A WQI + +G  E + G+Q  E++APGD+  FG    P  E E+E++QL+ELKNGRLAMVAS+G  +QE LTGQGP+EQ+  GH++PFGDG GFF
Sbjct:   38 SVSDLIGADTETGGIWDPLGLSQNEGSLRKYRECELKHGRVAMAAMLGIFVQGLYHLPDPVFSNPRPLAALQQVYEQRPEAIWQIIVGLGVIEFTGGRQK-EDRAPGDL-NFGSSFIPKSEKEFEELQLKELKNGRLAMVASMGALLQEYLTGQGPVEQVLAGHLNPFGDGQGFF 210          
BLAST of jgi.p|Trimin1|160757 vs. uniprot
Match: A0A835Z571_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z571_9STRA)

HSP 1 Score: 214 bits (545), Expect = 1.440e-67
Identity = 115/178 (64.61%), Postives = 137/178 (76.97%), Query Frame = 0
Query:   12 RMAVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDPVFSN-PRPLAALSQILAERPVAFWQIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPFGDGSGFF 188
            RM+V++++GAD ET GVWDP   +KDD  L+KYREVELKHGRVAMLATLGVLVQSF  LPDPVF++  RP  A  ++ + RP A  QIFLA GA EL + KQD E KAPGD+  FG +  P  E+E E +QL+ELKNGRLAM+A +GMFVQE LTGQGPIEQ+  GH+SPFGDG G F
Sbjct:   39 RMSVEELIGADTETGGVWDPAGFAKDDAALYKYREVELKHGRVAMLATLGVLVQSFVTLPDPVFADGARPQTAAFELASSRPEALAQIFLACGAVELLVLKQDPE-KAPGDLG-FGAY--PDTEEELEVLQLKELKNGRLAMMAIVGMFVQEKLTGQGPIEQILAGHVSPFGDGQGAF 212          
BLAST of jgi.p|Trimin1|160757 vs. uniprot
Match: A0A835ZHX7_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHX7_9STRA)

HSP 1 Score: 213 bits (541), Expect = 6.220e-67
Identity = 113/178 (63.48%), Postives = 135/178 (75.84%), Query Frame = 0
Query:   12 RMAVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDPVFSN-PRPLAALSQILAERPVAFWQIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPFGDGSGFF 188
            RMAV+D++GAD ET G+WDPL  +KD+ +L+KYRE ELKHGRVA LA LGVL Q+F HLPDPVF+   RP  AL+ ++ ERP A  QIFLAVG  EL + KQD E KAPGD+  FG  + P  ++E E++QL+ELKNGRLA VA +G FVQE LTGQGPIEQL  GH SPFGDG G F
Sbjct:   41 RMAVEDLIGADTETGGIWDPLGFAKDEKSLYKYREAELKHGRVAQLAILGVLAQTFFHLPDPVFAGGARPQEALASLIKERPEAIAQIFLAVGVVELFLLKQDPE-KAPGDLG-FG--IYPDTQEELEELQLKELKNGRLAQVAIVGAFVQEKLTGQGPIEQLLAGHTSPFGDGQGAF 214          
BLAST of jgi.p|Trimin1|160757 vs. uniprot
Match: A0A835ZDP1_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDP1_9STRA)

HSP 1 Score: 211 bits (538), Expect = 1.720e-66
Identity = 113/178 (63.48%), Postives = 136/178 (76.40%), Query Frame = 0
Query:   12 RMAVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFNHLPDPVFSN-PRPLAALSQILAERPVAFWQIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPFGDGSGFF 188
            +M+V +++GAD ETSGVWDP   +KDD  L+KYREVELKHGRVAMLATLGVLVQSF  LPDPVF+N  +P  A  +++  RP A  QIFLA GA EL + KQD E  A GD+  FG +  P  E+E+E +QL+ELKNGRLAM+A +GMFVQE LTGQGPIEQ+  GH+SPFGDG G F
Sbjct:   40 KMSVDELIGADTETSGVWDPAGFAKDDAALYKYREVELKHGRVAMLATLGVLVQSFVTLPDPVFANGAKPQTAAWELVTSRPEALAQIFLACGAIELLVLKQDPEKPA-GDLG-FGAY--PDTEEEFETLQLKELKNGRLAMMAIVGMFVQEKLTGQGPIEQILAGHVSPFGDGQGAF 213          
BLAST of jgi.p|Trimin1|160757 vs. uniprot
Match: A0A0G4GDB0_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GDB0_VITBC)

HSP 1 Score: 210 bits (534), Expect = 7.180e-66
Identity = 109/183 (59.56%), Postives = 138/183 (75.41%), Query Frame = 0
Query:    1 MPLRSAAAAVT-RMAVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELKHGRVAMLATLGVLVQSFN-HLPDPVFSNPRPLAALSQILAERPVAFWQIFLAVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDEWEKIQLRELKNGRLAMVASIGMFVQEALTGQGPIEQLQVGHISPF 181
            +P R A  + T +M+V++M+GAD+ET GV+DPL+ S+D+ +LF+ R VELKHGR+AMLA LG  VQS   HLPDPVFS PRPL+AL+++L ERP A  QI  A+ A EL  G+QDYENKAPGD+  FGD  K SD +E+ K QLRELKNGRLAM+  +GM VQE LTGQ   EQ+  G+I+PF
Sbjct:   31 LPTRRALRSTTPKMSVEEMIGADVETGGVFDPLKFSEDEASLFRRRAVELKHGRIAMLACLGYFVQSAGVHLPDPVFSEPRPLSALTKVLTERPWAAAQIVAAIAAIELGPGRQDYENKAPGDLGYFGDSFKNSDPEEFRKDQLRELKNGRLAMIGIMGMMVQEGLTGQSVWEQIGSGNINPF 213          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|160757 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZIK7_9STRA1.690e-130100.00Chlorophyll a/b-binding protein domain-containing ... [more]
W7U405_9STRA8.280e-8068.36Light-harvesting protein n=2 Tax=Monodopsidaceae T... [more]
A0A835ZAI4_9STRA7.700e-7865.56Light harvesting complex protein n=1 Tax=Tribonema... [more]
D5KBP8_ELYCH6.650e-7372.79Light harvesting complex protein 3 (Fragment) n=4 ... [more]
W7TRI0_9STRA6.840e-7263.64Light-harvesting protein n=1 Tax=Nannochloropsis g... [more]
W7TXE6_9STRA2.500e-7061.14Light harvesting complex protein n=3 Tax=Monodopsi... [more]
A0A835Z571_9STRA1.440e-6764.61Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A835ZHX7_9STRA6.220e-6763.48Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A835ZDP1_9STRA1.720e-6663.48Light harvesting complex protein n=2 Tax=Tribonema... [more]
A0A0G4GDB0_VITBC7.180e-6659.56Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 24..163
e-value: 7.0E-32
score: 111.2
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 5..185
e-value: 6.1E-41
score: 142.5
NoneNo IPR availablePANTHERPTHR21649:SF89CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTICcoord: 13..174
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 25..182
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 13..174

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_14contigContig_14:174966..177451 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|160757mRNA_3131Tribonema minus UTEX_B_3156 mRNAContig_14 174966..177451 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|160757|e_gw1.14.39.1 ID=Trimin1|160757|e_gw1.14.39.1|Name=jgi.p|Trimin1|160757|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=189bp
MPLRSAAAAVTRMAVQDMLGADIETSGVWDPLRLSKDDGNLFKYREVELK
HGRVAMLATLGVLVQSFNHLPDPVFSNPRPLAALSQILAERPVAFWQIFL
AVGAFELSIGKQDYENKAPGDIATFGDFVKPSDEDEWEKIQLRELKNGRL
AMVASIGMFVQEALTGQGPIEQLQVGHISPFGDGSGFF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln