Trimin1|144546|gw1.10.148.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|144546
Unique NameTrimin1|144546|gw1.10.148.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length144
Homology
BLAST of jgi.p|Trimin1|144546 vs. uniprot
Match: A0A836CPH6_9STRA (Resolvase, holliday junction-type, YqgF-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPH6_9STRA)

HSP 1 Score: 290 bits (742), Expect = 2.500e-99
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
Query:    1 MLRHVQRCSCLDPTRAALMAWDVSSTVIGIAVTDRTRAFVRPLTRTKLHGVDRRPLPPAVLMDKLDGLMREHGICGVVMGWPQELDGSAGRRCHAVLSTLRALHAAAPLRAPVLLWDERFTTVDARLEMAALGASARRVKREND 144
            MLRHVQRCSCLDPTRAALMAWDVSSTVIGIAVTDRTRAFVRPLTRTKLHGVDRRPLPPAVLMDKLDGLMREHGICGVVMGWPQELDGSAGRRCHAVLSTLRALHAAAPLRAPVLLWDERFTTVDARLEMAALGASARRVKREND
Sbjct:    1 MLRHVQRCSCLDPTRAALMAWDVSSTVIGIAVTDRTRAFVRPLTRTKLHGVDRRPLPPAVLMDKLDGLMREHGICGVVMGWPQELDGSAGRRCHAVLSTLRALHAAAPLRAPVLLWDERFTTVDARLEMAALGASARRVKREND 144          
BLAST of jgi.p|Trimin1|144546 vs. uniprot
Match: A0A7S4D9E5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9E5_HETAK)

HSP 1 Score: 73.6 bits (179), Expect = 2.290e-13
Identity = 44/134 (32.84%), Postives = 71/134 (52.99%), Query Frame = 0
Query:   12 DPTRAA-LMAWDVSSTVIGIAVTDRTRAFVRPLTRTKLHGVDRRPLPPAVLMDKLDGLMREHGICGVVMGWPQELDGSAGRRCHAVLSTLRALHAAAPLRAPVLLWDERFTTVDARLEMAALGASARRVKREND 144
            D +R+  ++  D++ T IG+A +D T +F  PL + +      R      +  KL  ++ E    G V+GWP   DGS G +C  VL+ L  +H    ++ P++LWDER T+VDAR  +       +R+K+  D
Sbjct:   30 DQSRSTCVLGLDIAETNIGVAFSDATYSFASPLKKLQRMRPTYRQDSMQNISSKLQKVIAEQQAIGAVVGWPLMPDGSLGMQCGHVLAFLTGMHQINEVQIPMVLWDERGTSVDARSFLWDAKTGKKRMKQMED 163          
BLAST of jgi.p|Trimin1|144546 vs. uniprot
Match: A0A2E7K062_9RICK (Putative pre-16S rRNA nuclease n=1 Tax=Rickettsiales bacterium TaxID=2026788 RepID=A0A2E7K062_9RICK)

HSP 1 Score: 70.9 bits (172), Expect = 9.800e-13
Identity = 47/129 (36.43%), Postives = 65/129 (50.39%), Query Frame = 0
Query:   13 PTRAALMAWDVSSTVIGIAVTDRTRAFVRPLTRTKLHGVDRRPLPPAVLMDKLDGLMREHGICGVVMGWPQELDGSAGRRCHAVLSTLRALHAAAPLRAPVLLWDERFTTVDARLEMAALGASARRVKR 141
            P +  L+A D+ S  IG+A++D  R     L     H + RR     +  D L   ++EH I G+VMG+P  +DGS G RC +    +R +     L  P LLWDER ++  A  E A L A   R KR
Sbjct:   14 PPKGRLLALDLGSKTIGLALSDELRGIANAL-----HTIKRRKFSQDI--DALQQAVKEHAIAGLVMGYPLNMDGSEGPRCQSTRQFVRNMEEHISL--PTLLWDERLSSYAA--EEAMLSADLSREKR 131          
BLAST of jgi.p|Trimin1|144546 vs. uniprot
Match: A0A3M2EJP1_9PROT (Putative pre-16S rRNA nuclease n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M2EJP1_9PROT)

HSP 1 Score: 70.9 bits (172), Expect = 1.550e-12
Identity = 48/131 (36.64%), Postives = 68/131 (51.91%), Query Frame = 0
Query:   11 LDPTRAALMAWDVSSTVIGIAVTDRTRAFVRPLTRTKLHGVDRRPLPPAVLMDKLDGLMREHGICGVVMGWPQELDGSAGRRCHAVLSTLRALHAAAPLRAPVLLWDERFTTVDARLEMAALGASARRVKR 141
            L P  A L+  D  + +IG+AV+D  R+   PLT  +      R L P   +  ++ L    G    V+G P+ +DGS G RC +V S  R+L   +P   P+LLWDER +TV A   + A  A A R +R
Sbjct:   15 LLPEGAPLIGLDHGTRMIGVAVSDSRRSIASPLTTLRRS----RRLTPD--LQAIEALAAARGAAAFVLGLPRNMDGSEGARCDSVRSFARSLARVSPR--PILLWDERLSTVAAHAVLDATDARADRRRR 137          
BLAST of jgi.p|Trimin1|144546 vs. uniprot
Match: A0A318SV05_9RHOB (Putative pre-16S rRNA nuclease n=1 Tax=Pseudoroseicyclus aestuarii TaxID=1795041 RepID=A0A318SV05_9RHOB)

HSP 1 Score: 68.6 bits (166), Expect = 8.240e-12
Identity = 48/126 (38.10%), Postives = 64/126 (50.79%), Query Frame = 0
Query:   15 RAALMAWDVSSTVIGIAVTDRTRAFVRPLT--RTKLHGVDRRPLPPAVLMDKLDGLMREHGICGVVMGWPQELDGSAGRRCHAVLSTLRALHAAAPLRAPVLLWDERFTTVDARLEMAALGASARR 138
            R AL A D+ +  IG+AV+D  R    PLT  R K  GVD + L  A         +      G+V+G P+ +DGS G R  +  +  R L A  PL  P++LWDER +TV A   +    AS RR
Sbjct:   15 RGALAALDLGTKTIGLAVSDGMRHVATPLTTIRRKKFGVDAQALLAA---------LESRAPVGLVLGLPRNMDGSEGPRAQSTRAFARNLSALTPL--PMMLWDERLSTVAAERALIEADASRRR 129          
BLAST of jgi.p|Trimin1|144546 vs. uniprot
Match: A0A845AA09_9SPHN (Putative pre-16S rRNA nuclease n=1 Tax=Qipengyuania algicida TaxID=1836209 RepID=A0A845AA09_9SPHN)

HSP 1 Score: 68.2 bits (165), Expect = 1.280e-11
Identity = 54/132 (40.91%), Postives = 67/132 (50.76%), Query Frame = 0
Query:   13 PTRAALMAWDVSSTVIGIAVTDRTRAFVRP---LTRTKLHGVDRRPLPPAVLMDKLDGLMREHGICGVVMGWPQELDGSAGRRCHAVLSTLRALHAAAPLRAPVLLWDERFTTVDARLEMAALGASARRVKR 141
            P   AL+A DV +  IGIA  D    F      L R K  G DR          KL  L+R  GI G+V+G P+ +DGS G R  A  S   A + A  L+ PVLLWDER++T+ A  E A +G    R KR
Sbjct:   19 PDGGALLALDVGTKTIGIATCDAGWRFATAGTTLPRGKF-GADRA---------KLGELVRARGITGLVIGLPRNMDGSEGPRAQA--SRAYARNCAEALKLPVLLWDERWSTLSA--ESAMIGQDMSRAKR 136          
BLAST of jgi.p|Trimin1|144546 vs. uniprot
Match: UPI001664D4FC (Holliday junction resolvase RuvX n=1 Tax=Chelatococcus reniformis TaxID=1494448 RepID=UPI001664D4FC)

HSP 1 Score: 67.0 bits (162), Expect = 4.230e-11
Identity = 49/125 (39.20%), Postives = 66/125 (52.80%), Query Frame = 0
Query:    4 HVQRCSCLD-PTRAALMAWDVSSTVIGIAVTDRTRAFVRPLT---RTKLHGVDRRPLPPAVLMDKLDGLMREHGICGVVMGWPQELDGSAGRRCHAVLSTLRALHAAAPLRA-PVLLWDERFTTV 123
            HV     LD P +A L+  D+ +  IG+A++D TR    PL    RTK           A L+D    L  +HG+ G+V+GWP  +DGS G R  A  + +R L   A L A P+ LWDER +TV
Sbjct:   10 HVPLADLLDLPGKARLLGLDLGTKTIGLALSDVTRRVASPLETIRRTKFSA------DAARLLD----LAEQHGVGGLVIGWPLNMDGSEGPRTQATGAFVRNL---AKLTAVPMALWDERLSTV 121          
BLAST of jgi.p|Trimin1|144546 vs. uniprot
Match: A0A1G3KJW0_9SPHN (Putative pre-16S rRNA nuclease n=20 Tax=Sphingomonadales TaxID=204457 RepID=A0A1G3KJW0_9SPHN)

HSP 1 Score: 66.2 bits (160), Expect = 5.950e-11
Identity = 46/132 (34.85%), Postives = 64/132 (48.48%), Query Frame = 0
Query:   13 PTRAALMAWDVSSTVIGIAVTDRTRAFVRP---LTRTKLHGVDRRPLPPAVLMDKLDGLMREHGICGVVMGWPQELDGSAGRRCHAVLSTLRALHAAAPLRAPVLLWDERFTTVDARLEMAALGASARRVKR 141
            P    LM  DV +  IG+A  D   +F  P   + R K              ++ L  L+ +HGI G+V+G P  +DGS   R  +  +  R L   APL  P+LLWDER++T  A +E A + A   R KR
Sbjct:   14 PAGGRLMGLDVGTKTIGVAFCDTNWSFATPDKTIIRNKFSAD----------LETLKALVAQHGIVGIVVGLPLNMDGSDSPRTQSTRAFARNL---APLALPLLLWDERWST--AAVERAMIAADVSRAKR 130          
BLAST of jgi.p|Trimin1|144546 vs. uniprot
Match: A0A849L4F2_9RHOB (Putative pre-16S rRNA nuclease n=1 Tax=Halovulum dunhuangense TaxID=1505036 RepID=A0A849L4F2_9RHOB)

HSP 1 Score: 66.2 bits (160), Expect = 6.860e-11
Identity = 44/126 (34.92%), Postives = 61/126 (48.41%), Query Frame = 0
Query:   13 PTRAALMAWDVSSTVIGIAVTDRTRAFVRPLTRTKLHGVDRRPLPPAVLMDKLDGLMREHGICGVVMGWPQELDGSAGRRCHAVLSTLRALHAAAPLRAPVLLWDERFTTVDARLEMAALGASARR 138
            P  A ++  D+    IG+A++DR      PL   +     RR          L+ +M E G  G+V+G P  +DGS G R  +  +  R L A  P+  PV+LWDER TTV A   +    AS RR
Sbjct:   14 PRDAPILGLDLGEKTIGVAISDRRLGIATPLLTIR-----RRKFTQDATA--LEAIMAERGAAGLVLGLPLNMDGSEGPRAQSTRAFARNLMARRPV--PVILWDERLTTVAAERALLEADASRRR 130          
BLAST of jgi.p|Trimin1|144546 vs. uniprot
Match: A0A2E6QIU7_9PROT (Putative pre-16S rRNA nuclease n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6QIU7_9PROT)

HSP 1 Score: 66.2 bits (160), Expect = 6.860e-11
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 0
Query:   17 ALMAWDVSSTVIGIAVTDRTRAFVRPLTRTKLHGVDRRPLPPAVLMDKLDGLMREHGICGVVMGWPQELDGSAGRRCHAVLSTLRALHAAAPLRAPVLLWDERFTT 122
            +L+  D     +G+A++DR R    PL      G+ R     + ++  L+ L+ EHG+ G+V+G P  ++G+ G RC +V    R +    PL  PVLLWDER +T
Sbjct:   19 SLLGVDTGEKTVGLALSDRLRVIASPLI-----GLRRSKF--SAMLSALEALIAEHGVVGMVVGLPVNMNGTEGPRCQSVRQFARNVEG--PLGLPVLLWDERLST 115          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144546 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CPH6_9STRA2.500e-99100.00Resolvase, holliday junction-type, YqgF-like prote... [more]
A0A7S4D9E5_HETAK2.290e-1332.84Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A2E7K062_9RICK9.800e-1336.43Putative pre-16S rRNA nuclease n=1 Tax=Rickettsial... [more]
A0A3M2EJP1_9PROT1.550e-1236.64Putative pre-16S rRNA nuclease n=1 Tax=Alphaproteo... [more]
A0A318SV05_9RHOB8.240e-1238.10Putative pre-16S rRNA nuclease n=1 Tax=Pseudorosei... [more]
A0A845AA09_9SPHN1.280e-1140.91Putative pre-16S rRNA nuclease n=1 Tax=Qipengyuani... [more]
UPI001664D4FC4.230e-1139.20Holliday junction resolvase RuvX n=1 Tax=Chelatoco... [more]
A0A1G3KJW0_9SPHN5.950e-1134.85Putative pre-16S rRNA nuclease n=20 Tax=Sphingomon... [more]
A0A849L4F2_9RHOB6.860e-1134.92Putative pre-16S rRNA nuclease n=1 Tax=Halovulum d... [more]
A0A2E6QIU7_9PROT6.860e-1134.91Putative pre-16S rRNA nuclease n=1 Tax=Rhodospiril... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006641YqgF/RNase H-like domainSMARTSM00732rnase_8scoord: 16..125
e-value: 4.1E-7
score: 39.6
IPR005227Putative pre-16S rRNA nucleasePFAMPF03652RuvXcoord: 18..141
e-value: 7.3E-16
score: 58.8
IPR037027YqgF/RNase H-like domain superfamilyGENE3D3.30.420.140coord: 16..144
e-value: 1.7E-20
score: 75.3
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 17..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_10contigContig_10:891846..894757 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|144546mRNA_4307Tribonema minus UTEX_B_3156 mRNAContig_10 891846..894757 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|144546|gw1.10.148.1 ID=Trimin1|144546|gw1.10.148.1|Name=jgi.p|Trimin1|144546|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=144bp
MLRHVQRCSCLDPTRAALMAWDVSSTVIGIAVTDRTRAFVRPLTRTKLHG
VDRRPLPPAVLMDKLDGLMREHGICGVVMGWPQELDGSAGRRCHAVLSTL
RALHAAAPLRAPVLLWDERFTTVDARLEMAALGASARRVKREND
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006641YqgF/RNaseH-like_dom
IPR005227YqgF
IPR037027YqgF/RNaseH-like_dom_sf
IPR012337RNaseH-like_sf