mRNA_9990 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|167646
Unique NamemRNA_9990
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|167646 vs. uniprot
Match: A0A835YZJ3_9STRA (Methionyl-tRNA synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZJ3_9STRA)

HSP 1 Score: 476 bits (1224), Expect = 4.240e-170
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 1 
Query:    1 IGHAYEAIASDCLSRYHRMYGRRVFFQTGTDEHGQKIAAAAEAEGKQPIDICDLYAGRFQELNQRLLISNDFYIRTTQPAHHAESQKLWLRCAEAGDIYLGKYEGWYNEREETFVSDKDAELTDFKDAYGWPLKRTSEASYFFRMGKYQEWLVQYINDHPEFIQPADKRAFILARLAEPLGDLSISRTTFRWGIPVPEGFDAAHVMYVWFDALSNYISSVHALDPG 678
            IGHAYEAIASDCLSRYHRMYGRRVFFQTGTDEHGQKIAAAAEAEGKQPIDICDLYAGRFQELNQRLLISNDFYIRTTQPAHHAESQKLWLRCAEAGDIYLGKYEGWYNEREETFVSDKDAELTDFKDAYGWPLKRTSEASYFFRMGKYQEWLVQYINDHPEFIQPADKRAFILARLAEPLGDLSISRTTFRWGIPVPEGFDAAHVMYVWFDALSNYISSVHALDPG
Sbjct:    1 IGHAYEAIASDCLSRYHRMYGRRVFFQTGTDEHGQKIAAAAEAEGKQPIDICDLYAGRFQELNQRLLISNDFYIRTTQPAHHAESQKLWLRCAEAGDIYLGKYEGWYNEREETFVSDKDAELTDFKDAYGWPLKRTSEASYFFRMGKYQEWLVQYINDHPEFIQPADKRAFILARLAEPLGDLSISRTTFRWGIPVPEGFDAAHVMYVWFDALSNYISSVHALDPG 226
[Close]
BLAST of jgi.p|Trimin1|167646 vs. uniprot
Match: D8LRH8_ECTSI (Methionine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRH8_ECTSI)

HSP 1 Score: 332 bits (851), Expect = 1.250e-105
Identity = 161/225 (71.56%), Postives = 181/225 (80.44%), Query Frame = 1 
Query:    1 IGHAYEAIASDCLSRYHRMYGRRVFFQTGTDEHGQKIAAAAEAEGKQPIDICDLYAGRFQELNQRLLISNDFYIRTTQPAHHAESQKLWLRCAEAGDIYLGKYEGWYNEREETFVSDKDAELTDFKDAYGWPLKRTSEASYFFRMGKYQEWLVQYINDHPEFIQPADKRAFILARLAEP-LGDLSISRTTFRWGIPVPEGFDAAHVMYVWFDALSNYISSVHALD 672
            IGHAYEAIASD LSRY RM G+RV FQTG+DEHGQKIA  A   G QPIDICD YAG+FQELN+RLLISND Y+RTT   H   SQ+LW  CA+AGDI+LGKYEGWY+EREE +V+D DAEL DFKDA+G PLKR SEASYFF+MGKY EWL+QYI D+P FIQP   R  IL RL      DLS+SRTTF+ GIPVP GFD AHVMYVWFDAL+NY+S +HALD
Sbjct:  138 IGHAYEAIASDVLSRYQRMSGKRVIFQTGSDEHGQKIANTAAKLGLQPIDICDKYAGKFQELNKRLLISNDLYMRTTSALHKETSQRLWQICADAGDIFLGKYEGWYDEREEKYVTDSDAELADFKDAFGSPLKRMSEASYFFKMGKYIEWLIQYITDNPSFIQPETHRLNILTRLQNGHQNDLSVSRTTFKHGIPVPVGFDQAHVMYVWFDALTNYLSGIHALD 362
[Close]
BLAST of jgi.p|Trimin1|167646 vs. uniprot
Match: K8YQC4_NANGC (Methionine--tRNA ligase n=4 Tax=Monodopsidaceae TaxID=425072 RepID=K8YQC4_NANGC)

HSP 1 Score: 309 bits (791), Expect = 3.850e-97
Identity = 144/226 (63.72%), Postives = 177/226 (78.32%), Query Frame = 1 
Query:    1 IGHAYEAIASDCLSRYHRMYGRRVFFQTGTDEHGQKIAAAAEAEGKQPIDICDLYAGRFQELNQRLLISNDFYIRTTQPAHHAESQKLWLRCAEAGDIYLGKYEGWYNEREETFVSDKDAELTDFKD-AYGWPLKRTSEASYFFRMGKYQEWLVQYINDHPEFIQPADKRAFILARLAEPLGDLSISRTTFRWGIPVPEGFDAAHVMYVWFDALSNYISSVHALDP 675
            IGHAYEA+ SD ++RY+RM G++VFF TGTDEHGQK+A  AE  G +PI++CD+YAG+FQ LN  L ISNDF++RTT P H+A +Q+LW RCA AGDIYL KYEGWYN REETFV++ +A+L D+KD A G PLK+  E SYFFRM KY++ L+Q+I   P FI P  +R  IL+RL E L DLSISRTTF WGIPVPE F  AHV+YVWFDALSNY++ +  LDP
Sbjct:  112 IGHAYEAVTSDVIARYYRMVGQQVFFLTGTDEHGQKVATTAEGMGMKPIELCDMYAGKFQALNHSLRISNDFFVRTTMPEHYASAQELWNRCAAAGDIYLSKYEGWYNVREETFVTENEAKLADYKDPASGLPLKKMEETSYFFRMSKYRDALIQHIQASPSFILPDTRRNSILSRLEEELTDLSISRTTFDWGIPVPENFAPAHVLYVWFDALSNYLTGIRWLDP 337
[Close]
BLAST of jgi.p|Trimin1|167646 vs. uniprot
Match: A0A7S2WSF8_9STRA (Methionine--tRNA ligase n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSF8_9STRA)

HSP 1 Score: 303 bits (777), Expect = 3.370e-95
Identity = 147/227 (64.76%), Postives = 169/227 (74.45%), Query Frame = 1 
Query:    1 IGHAYEAIASDCLSRYHRMYGRRVFFQTGTDEHGQKIAAAAEAEGKQPIDICDLYAGRFQELNQRLLISNDFYIRTTQPAHHAESQKLWLRCAEAGDIYLGKYEGWYNEREETFVSDKDAELTDFKD-AYGWPLKRTSEASYFFRMGKYQEWLVQYINDHPEFIQPADKRAFILARLAEPLGDLSISRTTFRWGIPVPEGFDAAHVMYVWFDALSNYISSVHALDPG 678
            +GHAYEA+ SD ++R+HR  GRRVFF TGTDEHGQKIA  A  +GKQPIDICD YA  FQ LN+RL +SND +IRTT+  H A +Q+LW RCA  GDIYL  Y GWYNEREETFV D DAEL  FKD   G PLKRT EASYFFR+ KY E L++    HPE  +P+++R  IL  L EPL DLSISRT+F WGIPVP  FD  HVMYVWFDALSNY+S +  LD G
Sbjct:   75 MGHAYEALTSDVIARWHRTIGRRVFFLTGTDEHGQKIANTAAGQGKQPIDICDKYAEGFQRLNRRLRVSNDRFIRTTEAQHEATAQELWRRCAANGDIYLDNYTGWYNEREETFVKDADAELWGFKDPGSGQPLKRTEEASYFFRLSKYHEPLLELFKAHPEVCEPSERRKDILDMLKEPLSDLSISRTSFSWGIPVPSEFDQRHVMYVWFDALSNYMSGIRGLDGG 301
[Close]
BLAST of jgi.p|Trimin1|167646 vs. uniprot
Match: A0A7S1TWI2_9STRA (Methionine--tRNA ligase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TWI2_9STRA)

HSP 1 Score: 281 bits (719), Expect = 1.770e-87
Identity = 137/226 (60.62%), Postives = 169/226 (74.78%), Query Frame = 1 
Query:    1 IGHAYEAIASDCLSRYHRMYGRRVFFQTGTDEHGQKIAAAAEAEGKQPIDICDLYAGRFQELNQRLLISNDFYIRTTQPAHHAESQKLWLRCA-----EAGDIYLGKYEGWYNEREETFVSDKDAELTDFKD-AYGWPLKRTSEASYFFRMGKYQEWLVQYINDHPEFIQPADKRAFILARLAEPLGDLSISRTTFRWGIPVPEGFDAAHVMYVWFDALSNYISSV 660
            +GHAYE +++D ++RYHRM GR VFF TG+DEHGQKIA  AE EG  PI ICD Y+  F+ LNQRLL+SND Y+RTT   H A  ++LW +CA     +  DIYL +YEGWYN REETFVS+ DA+LT++ D   G PL +TSE SYFFRM +YQE LV +I  +P+FIQP +KR  IL RL EPL DL +SRTTF WGI +PEG++  HVMYVWFDAL+NY+S V
Sbjct:  173 MGHAYEGLSTDIIARYHRMAGRDVFFLTGSDEHGQKIAKRAEDEGTTPIAICDRYSSAFKALNQRLLVSNDGYVRTTDEDHMAICRRLWQQCAATLGPDGSDIYLTQYEGWYNVREETFVSETDAQLTNYMDPTSGQPLTKTSEESYFFRMSRYQERLVAHIQANPDFIQPPEKRGDILKRLEEPLRDLCVSRTTFDWGITLPEGYETNHVMYVWFDALTNYLSGV 398
[Close]
BLAST of jgi.p|Trimin1|167646 vs. uniprot
Match: A0A7S2YTJ8_9STRA (Methionine--tRNA ligase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YTJ8_9STRA)

HSP 1 Score: 281 bits (718), Expect = 1.910e-87
Identity = 141/227 (62.11%), Postives = 169/227 (74.45%), Query Frame = 1 
Query:    1 IGHAYEAIASDCLSRYHRMYG--RRVFFQTGTDEHGQKIAAAAEAEGKQPIDICDLYAGRFQELNQRLLISNDFYIRTTQPAHHAESQKLWLRCAEAGDIYLGKYEGWYNEREETFVSDKDAELTDFKD-AYGWPLKRTSEASYFFRMGKYQEWLVQYINDHPEFIQPADKRAFILARL-AEPLGDLSISRTTFRWGIPVPEGFDAAHVMYVWFDALSNYISSVHAL 669
            +GHAYEA  SD ++RYHR+ G  + V+F TGTDEHGQKIA  A  +GKQPIDIC+LY+  F+ LNQRLLI+ND Y+RTT   H   +Q LW +CAEAGDIYL  Y GWYN REETFV++ DA+LTDFKD   G PLK+  E SYFF+M KYQ+ L+ +I  +P FIQP   R  IL RL ++ L DLSISRTTF WGIPVPEGF   HVMYVW DALSNY++ V+ L
Sbjct:  117 MGHAYEATTSDVIARYHRLCGAHKSVYFLTGTDEHGQKIAQTAADQGKQPIDICNLYSTGFRVLNQRLLITNDDYVRTTSDRHKKTAQALWKKCAEAGDIYLDTYSGWYNVREETFVTESDAKLTDFKDPTSGKPLKKVQEESYFFKMSKYQKDLIAHIEANPLFIQPEMHRNLILQRLRSDELRDLSISRTTFSWGIPVPEGFKDNHVMYVWMDALSNYLTGVNGL 343
[Close]
BLAST of jgi.p|Trimin1|167646 vs. uniprot
Match: A0A7S2AME4_9STRA (Methionine--tRNA ligase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AME4_9STRA)

HSP 1 Score: 283 bits (723), Expect = 4.250e-87
Identity = 141/232 (60.78%), Postives = 171/232 (73.71%), Query Frame = 1 
Query:    1 IGHAYEAIASDCLSRYHRMYGRRVFFQTGTDEHGQKIAAAAEAEGKQPIDICDLYAGRFQELNQRLLISNDFYIRTTQPAHHAESQKLWLRCAEAGDIYLGKYEGWYNEREETFVSDKDAELTDFKD-AYGWPLKRTSEASYFFRMGKYQEWLVQYINDHPEFIQPADKRAFILARLAEP------LGDLSISRTTFRWGIPVPEGFDAAHVMYVWFDALSNYISSVHALDP 675
            IGHAYE + +D ++R+HR++GRRVFF TGTDEHGQKIA  AE +G QPIDIC+ YA  FQ++N++L +SNDF++RTT   H A +Q LW +C EAGDIYL  Y GWY EREETFV+ KDAE   +KD + G PLK  SEASYFFR+ KY++ L+  +ND PEF QP  +R  I A L EP      L DLSISRTTF+WGIPVP   D  HVMYVWFDALSNY+S V  +DP
Sbjct:  106 IGHAYENLVTDIIARWHRVWGRRVFFLTGTDEHGQKIANTAEKDGLQPIDICNKYAAEFQKMNKKLAVSNDFFVRTTSAKHKALAQALWKKCEEAGDIYLDNYTGWYLEREETFVTPKDAEEWGYKDPSSGVPLKEVSEASYFFRLSKYRQPLLDLLNDRPEFCQPESRRLLIKAML-EPTEGDNVLRDLSISRTTFKWGIPVPG--DVNHVMYVWFDALSNYLSGVDGMDP 334
[Close]
BLAST of jgi.p|Trimin1|167646 vs. uniprot
Match: A0A7S0VMT7_9CRYP (Methionine--tRNA ligase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VMT7_9CRYP)

HSP 1 Score: 283 bits (723), Expect = 4.840e-87
Identity = 140/224 (62.50%), Postives = 172/224 (76.79%), Query Frame = 1 
Query:    1 IGHAYEAIASDCLSRYHRMYGRRVFFQTGTDEHGQKIAAAAEAEGKQPIDICDLYAGRFQELNQRLLISNDFYIRTTQPAHHAESQKLWLRCAEAGDIYLGKYEGWYNEREETFVSDKDAELTDFKD-AYGWPLKRTSEASYFFRMGKYQEWLVQYINDHPEFIQPADKRAFILARLAEPLGDLSISRTTFRWGIPVPEG----FDAAHVMYVWFDALSNYISS 657
            +GHAYEA+ SD ++R+HR YGR VFF TGTDEHGQKIA  AEA G +PIDICD YA  FQ LN+R+ ISNDFYIRTT   H   +Q+L+ R A+AGDIYL  YEGWYN REETFV++ DA+ +D+KD   G PL++ +E SYFFRM KYQE LV++I D+ +FIQP  +R  +L+RL EPL DLS+SRTTF WG+PVPE      D  HVMYVWFDAL+NY+S+
Sbjct:  142 MGHAYEAVTSDIIARWHRAYGRDVFFCTGTDEHGQKIAQTAEAMGLKPIDICDKYAEAFQVLNRRMDISNDFYIRTTMDKHKKAAQELFRRAADAGDIYLDTYEGWYNVREETFVTENDAQQSDYKDPTSGVPLQKMTEESYFFRMSKYQERLVRHIEDNEDFIQPDYRRNEMLSRLKEPLRDLSVSRTTFDWGVPVPEHPALKSDKKHVMYVWFDALTNYLSA 365
[Close]
BLAST of jgi.p|Trimin1|167646 vs. uniprot
Match: A0A6B2KY41_9EUKA (Methionine--tRNA ligase n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KY41_9EUKA)

HSP 1 Score: 280 bits (716), Expect = 2.660e-86
Identity = 136/221 (61.54%), Postives = 167/221 (75.57%), Query Frame = 1 
Query:    1 IGHAYEAIASDCLSRYHRMYGRRVFFQTGTDEHGQKIAAAAEAEGKQPIDICDLYAGRFQELNQRLLISNDFYIRTTQPAHHAESQKLWLRCAEAGDIYLGKYEGWYNEREETFVSDKDAELTDFKD-AYGWPLKRTSEASYFFRMGKYQEWLVQYINDHPEFIQPADKRAFILARLAEPLGDLSISRTTFRWGIPVPEGFDAAHVMYVWFDALSNYISSV 660
            IGHAYEA+ +D ++RYHR+YGR VFF TGTDEHGQK+A AA+A+G +PI++CD Y G F+ELN RL +S D+YIRTT P H      LW R   AGDIYLGKYEGWYN REE FV+D +AE +++KD   G PL +TSE SYFFRM KYQE L+Q+I D+P FI P ++ A +L RL EPL DLSISRTTF WG+  P   +  HVMYVWFDAL+NY++ V
Sbjct:   15 IGHAYEAMVADTIARYHRIYGRNVFFMTGTDEHGQKVAEAAQAQGLKPIELCDKYVGMFRELNGRLNVSEDYYIRTTVPKHERTCIWLWKRAEMAGDIYLGKYEGWYNVREEKFVTDTEAEKSNYKDPGSGKPLVKTSEPSYFFRMSKYQERLIQHILDNPGFIFPEEREAEVLTRLREPLLDLSISRTTFDWGVKCPTR-EPDHVMYVWFDALTNYLTGV 234
[Close]
BLAST of jgi.p|Trimin1|167646 vs. uniprot
Match: L1JLS7_GUITC (Methionine--tRNA ligase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JLS7_GUITC)

HSP 1 Score: 279 bits (714), Expect = 3.340e-86
Identity = 138/223 (61.88%), Postives = 170/223 (76.23%), Query Frame = 1 
Query:    1 IGHAYEAIASDCLSRYHRMYGRRVFFQTGTDEHGQKIAAAAEAEGKQPIDICDLYAGRFQELNQRLLISNDFYIRTTQPAHHAESQKLWLRCAEAGDIYLGKYEGWYNEREETFVSDKDAELTDFKD-AYGWPLKRTSEASYFFRMGKYQEWLVQYINDHPEFIQPADKRAFILARLAEPLGDLSISRTTFRWGIPVPEG----FDAAHVMYVWFDALSNYIS 654
            +GHAYEA+ SD ++R+HR YGR+VF+ TGTDEHGQKIA  AE  G +PIDICD YA  FQELN+RL ISNDFYIRTT   H   +Q L+L+ A+AGDIYL  YEGWYN REETFV++ +A+ +D+KD + G PL++ +E SYFFRM KYQ+ L+ YI  + +FIQP  +R  ILA+L EPL DLS+SRT F WGIPVPE      D  HVMYVWFDALSNY++
Sbjct:  106 MGHAYEAVTSDIIARWHRAYGRKVFYLTGTDEHGQKIADTAENLGVKPIDICDKYANAFQELNKRLGISNDFYIRTTMDKHKKLAQLLFLKAADAGDIYLDTYEGWYNVREETFVTETEAQASDYKDPSSGKPLEKRTEESYFFRMSKYQDRLLAYIEKNADFIQPVFRRNEILAKLREPLRDLSVSRTNFDWGIPVPEHPALKSDKKHVMYVWFDALSNYVT 328
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|167646 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZJ3_9STRA4.240e-170100.00Methionyl-tRNA synthetase n=1 Tax=Tribonema minus ... [more]
D8LRH8_ECTSI1.250e-10571.56Methionine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2... [more]
K8YQC4_NANGC3.850e-9763.72Methionine--tRNA ligase n=4 Tax=Monodopsidaceae Ta... [more]
A0A7S2WSF8_9STRA3.370e-9564.76Methionine--tRNA ligase n=2 Tax=Rhizochromulina ma... [more]
A0A7S1TWI2_9STRA1.770e-8760.62Methionine--tRNA ligase n=2 Tax=Phaeomonas parva T... [more]
A0A7S2YTJ8_9STRA1.910e-8762.11Methionine--tRNA ligase (Fragment) n=1 Tax=Amphipr... [more]
A0A7S2AME4_9STRA4.250e-8760.78Methionine--tRNA ligase n=1 Tax=Dictyocha speculum... [more]
A0A7S0VMT7_9CRYP4.840e-8762.50Methionine--tRNA ligase n=1 Tax=Hemiselmis tepida ... [more]
A0A6B2KY41_9EUKA2.660e-8661.54Methionine--tRNA ligase n=1 Tax=Arcella intermedia... [more]
L1JLS7_GUITC3.340e-8661.88Methionine--tRNA ligase n=1 Tax=Guillardia theta (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_52contigContig_52:881079..886308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|167646|e_gw1.52.36.1
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
KEGG rclassRC00055,RC00523
KEGG ReactionR03659,R04773
KEGG ModuleM00359,M00360
KEGG Pathwayko00450,ko00970,map00450,map00970
KEGG koko:K01874,ko:K15437
EC6.1.1.10
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004825,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006431,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0031974,GO:0032543,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140053,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
Preferred nameMSM1
DescriptiontRNA binding
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0143@1|root,KOG0436@2759|Eukaryota,KOG2241@2759|Eukaryota
Evalue2.05e-106
Seed ortholog2880.D8LRH8
Hectar predicted targeting categoryother localisation
TranscriptId167968
TrackFilteredModels1
ProteinId167646
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167646gene_9990Tribonema minus UTEX_B_3156 geneContig_52 881079..886308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|167646Trimin1|167646|e_gw1.52.36.1Tribonema minus UTEX_B_3156 polypeptideContig_52 881079..886308 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9990_1exon_9990_1Tribonema minus UTEX_B_3156 exonContig_52 881079..881147 +
exon_9990_2exon_9990_2Tribonema minus UTEX_B_3156 exonContig_52 881532..881642 +
exon_9990_3exon_9990_3Tribonema minus UTEX_B_3156 exonContig_52 882698..882789 +
exon_9990_4exon_9990_4Tribonema minus UTEX_B_3156 exonContig_52 883887..883992 +
exon_9990_5exon_9990_5Tribonema minus UTEX_B_3156 exonContig_52 884575..884688 +
exon_9990_6exon_9990_6Tribonema minus UTEX_B_3156 exonContig_52 886120..886308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9990CDS_9990Tribonema minus UTEX_B_3156 CDSContig_52 881079..881147 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9990 ID=mRNA_9990|Name=jgi.p|Trimin1|167646|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=681bp|location=Sequence derived from alignment at Contig_52:881079..886308+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATCGGCCACGCGTACGAGGCGATCGCGTCGGACTGCCTGTCGCGCTACCA
CCGCATGTACGGGCGCCGGGTGTTCTTCCAGACAGGCACGGACGAGCACG
GCCAGAAGATCGCGGCGGCGGCGGAGGCGGAGGGCAAGCAGCCCATCGAC
ATCTGCGACCTGTACGCGGGGCGCTTCCAGGAGCTGAACCAGCGGCTGCT
GATCAGCAACGACTTCTACATACGCACCACGCAGCCCGCGCACCACGCCG
AGTCGCAGAAGCTGTGGCTCAGGTGCGCGGAGGCGGGCGACATCTACCTC
GGGAAGTACGAGGGCTGGTACAACGAGCGCGAGGAGACGTTCGTCAGCGA
CAAGGACGCGGAGCTGACGGACTTCAAGGACGCGTACGGCTGGCCGCTCA
AGCGCACGTCCGAGGCGAGCTACTTCTTCCGCATGGGCAAGTACCAGGAG
TGGCTGGTGCAGTACATCAATGACCACCCAGAGTTCATCCAGCCCGCGGA
CAAGCGCGCCTTCATCCTCGCGCGCCTGGCGGAGCCGCTGGGCGACCTGA
GCATCTCGCGCACGACGTTCCGCTGGGGCATCCCCGTGCCCGAGGGGTTC
GACGCCGCGCACGTCATGTACGTCTGGTTCGACGCGCTCAGCAACTACAT
CAGCTCCGTGCACGCGCTGGACCCGGGGTGA
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protein sequence of jgi.p|Trimin1|167646

>Trimin1|167646|e_gw1.52.36.1 ID=Trimin1|167646|e_gw1.52.36.1|Name=jgi.p|Trimin1|167646|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=227bp
IGHAYEAIASDCLSRYHRMYGRRVFFQTGTDEHGQKIAAAAEAEGKQPID
ICDLYAGRFQELNQRLLISNDFYIRTTQPAHHAESQKLWLRCAEAGDIYL
GKYEGWYNEREETFVSDKDAELTDFKDAYGWPLKRTSEASYFFRMGKYQE
WLVQYINDHPEFIQPADKRAFILARLAEPLGDLSISRTTFRWGIPVPEGF
DAAHVMYVWFDALSNYISSVHALDPG*
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mRNA from alignment at Contig_52:881079..886308+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9990 ID=mRNA_9990|Name=jgi.p|Trimin1|167646|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5230bp|location=Sequence derived from alignment at Contig_52:881079..886308+ (Tribonema minus UTEX_B_3156 )
ATCGGCCACGCGTACGAGGCGATCGCGTCGGACTGCCTGTCGCGCTACCA
CCGCATGTACGGGCGCCGGGTGAGCGGCAGGCGCGCGCGCGCGCGCTGCG
TGACGCATGCGGAATCTCAAAACCAGCACGAAATCATCCTGCATGCCTTG
GGCGCGTTGAGTCGTGGGCGAACTTCAAGGCTGTGTGCGCGCGCGCGCGC
GCTCGGGCGGTAACTGTGGTGGCTACTTTTAAAAGCAATTGGCAGGAGTT
TCTACATGGCAGTTTGTGAAGGAGTGACTGAGTCACGTGGTCACCGCGAG
TGTGAGCTGTAGGCAGGCGTTCGCCTATGAAGTAAATGCGCCTATAGCCT
CACCGGCGCTTGCTCGCAGGCCCAAACTGCGCTCCACGTCATAGCAGAAA
ACAGTGACGCTCCTACGCGCAACTGCGCTCCCGCCTCCCCATGCCGCGCC
CAGGTGTTCTTCCAGACAGGCACGGACGAGCACGGCCAGAAGATCGCGGC
GGCGGCGGAGGCGGAGGGCAAGCAGCCCATCGACATCTGCGACCTGTACG
CGGGGCGCTTCCAGGTACGGCGTGTGCCGTAGTTCTCTTGAGACGCTTCC
AAAATCATGTGTTCTGGCGTCTGCCGACTTTGGGCGTGTGCTGGTCTTCG
TCACCTGCGTTGCTTCTCGCGGCGCTTAGTCATCAGGTTCGGCGTCTGCT
GACAGTAGATGACCTCAGGACGCGGCAGAGGGCTAGCAGCCCATCGGCAC
CTGAGTTCTTGACGCAAGGCGTTTCCAGATACGACGTGTGCCGGCCCTTC
TCACCTGCGTAGTTTCTTGAGACGCCTCGTCGCCTGCTCTTCTTGAGCGC
TTCGTCGTCTGTTTTGGCATGTGCTGAGTCTTGAGGACCTTAACACACGC
AGCGGCGGTTCAGTAGTGCACTGACATTTGCTACCTGTGCGCTGGGCGCT
TGCGGGTGCAGCGCGTTGACCGTTTGTACGGTGCATCAGTTTGCTGCTGA
GGGCGGGAGAAAGCCCACAATTATTAGTTCTTCTGCGGGAACGAGGTTAG
CAGTGCATTGTCACTTGTGGCCTGTACGCCGGGCGCCGGGCGCCGGCCAC
TCGTGCTTTTCATCAATTCTTGCTCAGGGCCTGAGAAGGCCCATTTTACC
AATGCAACACTGGCGACAGGGCGTCCAAGTGTTGACGCAATATTACGCAA
CGCTCAAGCGCGCCGTTCTTGCACTCTTCTGCGAGGCACTACGTGCTCTA
CCCTGGCGCCCGTCTGGACTCGCAACGACTCGTGATGCTTGGCTGTGCCA
CTCTGCTGTCACCGTGATCGCTCGCTCGCTCGCTGTGCACGATTCTCCAA
TGAATGCACATCCCCCTCGCCACTGGATGTGCAGAGCGGCACTGCGTTTC
GGCGATGGTTTTAACGATGTACGGCGCACAGAACTCCGCAGTTGCCTGCA
TAAATGCACGTCAAGAAAAGCCTGGCTCAAGGACCCCCCCCCCCTTCACT
CTGCGTGTTGAAAGGGGGTTGTACAACGGCGACGTTGCAATCTGCCGTGC
AGCAGCAGCGCTCGACTGACGCGCAACGCCGCGTGCCCTCCCCCCCCCCC
CCCCCCCCCCCCCCAACAGGAGCTGAACCAGCGGCTGCTGATCAGCAACG
ACTTCTACATACGCACCACGCAGCCCGCGCACCACGCCGAGTCGCAGAAG
CTGTGGCTCAGGTGAGCAGCGCTCAGCAGCAGCATAGCTAGGGCTAGGGC
TAGAATCAACTGTTAGGGTCAGGGTCAGGGTCGAAAACAAAACGGTTATG
CGAAACTGGGTCAGAATGAAGTGCGCCCTTTGCGAGAACTGCGTGTAGTG
AATGAAGGCGGGCATGCCATGCGCGTCAATGGCGTATTGCCAGGCGCGTG
TGTCAGCGCCGTGCTGCGGCCCCATTTTCCAGTCGCTCAGGAGTGTCGCG
TGCATAAAGGCTTGGCCGCCTCTGTCAGCCGCTGACGGCGGTCTCGCAGT
ACTTGCAGTGCGCGCATTGCCTGAGACCGCGTGTGTCGCTCTGTGCCGAC
AGTCCCTGACATGGTTCTGCAGAGGCCATGCCCCGCGCTGACGTGTGAAC
AAGTCGGTTTGAGCTCCCGCTGGTGACGCGCAGCGAGTGAGCCTGAGCGC
TGACGTAACCGCTTATTTTGTTTTTGGAGGAGGAGGGAGGGGGGGGGGCA
GTGCTCCGGTGCTGCAGAACGGCGCAGCACGCTCACATCTGCTGGCCGTC
ACTCGCGCTGTTTCTCCTTGCGATAGTCGTCTGTGCCGGGGCGTTGCGGA
CGTATGGTGCCTTGACTGATTAACTGCTATTCTGAAACATGCGGTGCGTC
AACATTTTGTGTAAGTTTGTCCTTTGTGCATGACATAAAATGAATGTGAC
GTCTGCCCGCGTATCCGCCTAACTGACATTTTGGCCCTCACACGCACGCG
CCAACTCCGGAACGCACCCAGAGCTGAACGCCCGCCTCCGCCGCCCCACG
CGCGTCAGGAAGCCGCGGTTGCAACTGCTCGCTACGCCAATACGCGCCAT
GATCACACACAACATGCATGATTGTCGTTCTGCAACTCACTGCACTGCAC
GTAGTGAGTCCGAAATTTGCCCACTGCTCAACCATGAATCAATGCCGCAC
GTGTTCCACAGCCGGGCGTTGATGGCACGATGTCAGCCTGCCCTCAAAAC
TGTTCAAGACCTACCCCTCCACCGTCTTTGATGAGCCTGCACCCGACTGT
GCTGCATGACGATCCCCCCCCCCCCCCCCCCCGCCCCCCCGCCCCCCGTC
GACCGCAGGTGCGCGGAGGCGGGCGACATCTACCTCGGGAAGTACGAGGG
CTGGTACAACGAGCGCGAGGAGACGTTCGTCAGCGACAAGGACGCGGAGC
TGACGGACTTCAAGGTGCGACGCTATTCGCCACTACTTCAAGCGGGCGAC
GTGCGCCAGCGCGCCCGCGTGCGGTCGCGACGAGTTGTGTCTCGAAAAGC
TGCATGCGGTAGACTAGCGGTGCTAGAAATGGATTGGGATCAGCCAGTTC
AGGGCGCTTCGCGGGTCTTGCGGCGCAGCAAGTGCGCTGATGTACGCTGG
CGCGTAGAGTTGCGCTCTTGAGCAACGACGTCTGAGCAGGGGCTCTCCTG
CGCACCTCGTGTGTGCCGCGCTGATTATCTTCATAGGCCTGGTGGTGGCG
CGGCGCGTACGCGGCGCACCTCCAAGCATGCTGCTACTACCGCCCATGCT
TCTGCCGCTGGAAAAACATTGCAAGCTCGCAAGCTCTGAGGGCATACTCT
GGGGCGCTGGCTTTCACTCTGATTTTTTTCAACTCTGGCGTGATTTTTTG
TTGCACATCCTCTAGTGTACGGCTGCGCGCGGCGGGTGCCGCTACGCAGC
ACCGCCCGGCGCCATGCAGCACCACCGACGCATCTCGAATACTTCAATGG
GATCGTCACCCATACCTACCTGCCTGCCCGCTTCTCCTCGCCCCAGGACG
CGTACGGCTGGCCGCTCAAGCGCACGTCCGAGGCGAGCTACTTCTTCCGC
ATGGGCAAGTACCAGGAGTGGCTGGTGCAGTACATCAATGACCACCCAGA
GTTCATCCAGGTGACCACGCGCACTCAGCGCGGCTGCCCCTGCTCCGCCC
TAGGGTTAGTTAGGACTAGGGCTAGGGAAAACTCAACCCTATTCGTAGTC
CTCTGCTCTGCCGGCGCGCCTGTCATCGACGGATGGTGGCAGTCGCCCCA
GAGTGTGCGTGCAGGCAGCGCGCGGCGGCGCCGCCGATGACCGCACGATG
ACGTCGCACCGCACGGCAGCGCTCCACCTGCGCCCCTTGTCACAAACAAG
CGCTGCGGTGCAGCGGCGTGGCTGGAACTTTGCGTGCGCCCGAGTTGTGT
TGAAGTGGACGCGAGCGCACGTCCGCGGCTCTTCGCAGCGCGCATGCGGG
GTTCCCATTTGTCTACCGAGCGCTGAGCTGAGCACCGTCTAGGTAGCGGG
GATGCCCTATGACTTCCTCGAATGCATGCGCGCGTTCAGGTGGGCGTGCA
TGCGCGGCCGTCTCGGCACCGTGCGCGCAACGACGCACGTGCACGCCAGG
CAGACGGACGGCCGGCGCCCTGTCGCCTCGTTTTGACGCGCGGCTGAGTC
GCTCGCGACGTGCCCAGAGACGCCCTGGCTCCGCCCTGTCGGCAGGTTCC
CTCGGCAACCTGTGGAAAAACTCAGAGCGTGCTCCGCTTAAGCGCCATGT
TCATCCTCTTCATGGTGTGCACCCGCTTTTCAAGGTCGCTTCCCTCAGAA
CGACTGATATCACGTTGAAGTGCGCATGCTTCTTTTACACATAGCTATGC
TGTGCGCCGACGCCGCGCGCGCAGCCCGCGGACATGCGCGCCTCACCTGT
GTACATGTACATACCCCGCGCCGCTTGCTGATGCAGCTCGCGGACAAGCG
CGCCTTCGTACGTCAATTTACAGCATACGCACCCTGCTATGTGTACCGAC
ACTGTGGGCGCGGCTTGCGGACAAGCGCGCCTTCATCCGTGCACTCACAG
CATACATGCCCTATGAAACACTCACAGCATACATACCCTACATGCGCCGC
GCGCTGCCGCAGCCCGCGGACAAGCGCGCCTTCATCTGTGTAATTTCAGC
ATGCATACACTACATGCGCTGTGCGCTGCCGCAGCCCACGGACAAGCGCG
CCTTCATCCGTGTACTCACAGCGTACATGCCCTACATACGCTGTGCGCTG
ACGCAGCGTGCGGACAAGCGCGCCTTCACATGTGTACTCACAGCGTACAT
ACCCTATGCTGCACTCACAGCCTACATACCCTACCGCTGCGCGTTGACGC
AGCCCGCGGACAAGCGCGCCTTCACGCATACACTTACAGCAATGCTATGC
AGCAGCATACATATCTACGCTGTGCGCTGATGCTGCGTGCGCAGCCCCGC
GGACAATCGCGCCTTCATTTGTGTACTTTCAGCACACATACCCTATGCTG
TACTCACAGCGTACATACCCTACCGCTGCGCGCCGCCGCAGCCCGCGGAC
AAGCGCGCCTTCATCCTCGCGCGCCTGGCGGAGCCGCTGGGCGACCTGAG
CATCTCGCGCACGACGTTCCGCTGGGGCATCCCCGTGCCCGAGGGGTTCG
ACGCCGCGCACGTCATGTACGTCTGGTTCGACGCGCTCAGCAACTACATC
AGCTCCGTGCACGCGCTGGACCCGGGGTGA
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Coding sequence (CDS) from alignment at Contig_52:881079..886308+

>mRNA_9990 ID=mRNA_9990|Name=jgi.p|Trimin1|167646|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=681bp|location=Sequence derived from alignment at Contig_52:881079..886308+ (Tribonema minus UTEX_B_3156 )
ATCGGCCACGCGTACGAGGCGATCGCGTCGGACTGCCTGTCGCGCTACCA
CCGCATGTACGGGCGCCGGGTGTTCTTCCAGACAGGCACGGACGAGCACG
GCCAGAAGATCGCGGCGGCGGCGGAGGCGGAGGGCAAGCAGCCCATCGAC
ATCTGCGACCTGTACGCGGGGCGCTTCCAGGAGCTGAACCAGCGGCTGCT
GATCAGCAACGACTTCTACATACGCACCACGCAGCCCGCGCACCACGCCG
AGTCGCAGAAGCTGTGGCTCAGGTGCGCGGAGGCGGGCGACATCTACCTC
GGGAAGTACGAGGGCTGGTACAACGAGCGCGAGGAGACGTTCGTCAGCGA
CAAGGACGCGGAGCTGACGGACTTCAAGGACGCGTACGGCTGGCCGCTCA
AGCGCACGTCCGAGGCGAGCTACTTCTTCCGCATGGGCAAGTACCAGGAG
TGGCTGGTGCAGTACATCAATGACCACCCAGAGTTCATCCAGCCCGCGGA
CAAGCGCGCCTTCATCCTCGCGCGCCTGGCGGAGCCGCTGGGCGACCTGA
GCATCTCGCGCACGACGTTCCGCTGGGGCATCCCCGTGCCCGAGGGGTTC
GACGCCGCGCACGTCATGTACGTCTGGTTCGACGCGCTCAGCAACTACAT
CAGCTCCGTGCACGCGCTGGACCCGGGGTGA
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