mRNA_999 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156769
Unique NamemRNA_999
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|156769 vs. uniprot
Match: A0A835ZL26_9STRA (DnaJ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL26_9STRA)

HSP 1 Score: 219 bits (558), Expect = 2.250e-72
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 
Query:    1 DFYKALGVATNASGDAVKAAYRTRVKECHPDAMYRKGDTSDAALDEFYLLEEAYSVLSDPGKRSTYDQGRAMKRMVAWLDKGDWGSAMAAVGKVGRAVAVDIAVPLAKG 327
            DFYKALGVATNASGDAVKAAYRTRVKECHPDAMYRKGDTSDAALDEFYLLEEAYSVLSDPGKRSTYDQGRAMKRMVAWLDKGDWGSAMAAVGKVGRAVAVDIAVPLAKG
Sbjct:    1 DFYKALGVATNASGDAVKAAYRTRVKECHPDAMYRKGDTSDAALDEFYLLEEAYSVLSDPGKRSTYDQGRAMKRMVAWLDKGDWGSAMAAVGKVGRAVAVDIAVPLAKG 109
[Close]
BLAST of jgi.p|Trimin1|156769 vs. uniprot
Match: V8D055_9NOCA (Chaperone protein DnaJ n=9 Tax=Corynebacteriales TaxID=85007 RepID=V8D055_9NOCA)

HSP 1 Score: 73.9 bits (180), Expect = 3.610e-13
Identity = 39/72 (54.17%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:    1 DFYKALGVATNASGDAVKAAYRTRVKECHPDAMYRKGDTSDAALDEFYLLEEAYSVLSDPGKRSTYDQGRAM 216
            DFYKALGVA++AS D +K AYR   +E HPDA         AA + F L+ EA+SVLSDP KR  YD  R M
Sbjct:   11 DFYKALGVASDASADDIKRAYRKLARELHPDA----NPNDPAAEERFKLVSEAHSVLSDPAKRKEYDDTRRM 78
[Close]
BLAST of jgi.p|Trimin1|156769 vs. uniprot
Match: A0A843T3B4_9BACT (Chaperone protein DnaJ n=1 Tax=Gemmatimonas sp. TaxID=1962908 RepID=A0A843T3B4_9BACT)

HSP 1 Score: 73.2 bits (178), Expect = 6.370e-13
Identity = 40/70 (57.14%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:    1 DFYKALGVATNASGDAVKAAYRTRVKECHPDAMYRKGDTSDAALDEFYLLEEAYSVLSDPGKRSTYDQGR 210
            DFYK LGVA NAS D +K AYR   K+ HPDA         AA D F  + EAYSVLSD GKR  YDQ R
Sbjct:    7 DFYKILGVAENASADEIKKAYRKLAKQYHPDA----NPNDVAATDRFKEVSEAYSVLSDEGKRKQYDQVR 72
[Close]
BLAST of jgi.p|Trimin1|156769 vs. uniprot
Match: R7WMQ8_9NOCA (Chaperone protein DnaJ n=2 Tax=Rhodococcus rhodnii TaxID=38312 RepID=R7WMQ8_9NOCA)

HSP 1 Score: 72.8 bits (177), Expect = 9.240e-13
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:    1 DFYKALGVATNASGDAVKAAYRTRVKECHPDAMYRKGDTSDAALDEFYLLEEAYSVLSDPGKRSTYDQGRAM 216
            DFYK LGV+++AS D +K AYR   ++ HPDA    GDT  AA D F  + EA++VLSDP KR  YD+ RAM
Sbjct:   10 DFYKELGVSSDASQDDIKKAYRKLARDLHPDA--NPGDT--AAEDRFKAVSEAHAVLSDPAKRKEYDETRAM 77
[Close]
BLAST of jgi.p|Trimin1|156769 vs. uniprot
Match: D8LB23_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB23_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.090e-12
Identity = 43/99 (43.43%), Postives = 53/99 (53.54%), Query Frame = 1 
Query:    1 DFYKALGVATNASGDAVKAAYRTRVKECHPDAMYRKGDTSDAA--LDEFYLLEEAYSVLSDPGKRSTYDQGRAMKRMVAWLDKGDWGSAMAAVGKVGRA 291
            D+Y ALG+   A+   +K AYR      HPD       T D     D F     AY VLSDPGK+STYDQG AM+  V  +  G WG+ M+AV  +G A
Sbjct:  137 DYYAALGLKVGATPTEIKNAYRKIAMRVHPD-------TKDGINNRDIFESTTAAYEVLSDPGKKSTYDQGLAMRSFVDKVKAGKWGNVMSAVASLGAA 228
[Close]
BLAST of jgi.p|Trimin1|156769 vs. uniprot
Match: A0A0Q5QV40_9NOCA (Chaperone protein DnaJ n=2 Tax=Williamsia TaxID=85043 RepID=A0A0Q5QV40_9NOCA)

HSP 1 Score: 72.0 bits (175), Expect = 1.770e-12
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:    1 DFYKALGVATNASGDAVKAAYRTRVKECHPDAMYRKGDTSDAALDE-FYLLEEAYSVLSDPGKRSTYDQGRA 213
            DFYK LGVA++AS DA+K AYR   +E HPDA     +  DAA +E F  + EA+SVLSDP KR  YD+ R+
Sbjct:   11 DFYKDLGVASDASADAIKKAYRKLARELHPDA-----NPGDAAAEERFKRVSEAHSVLSDPAKRKEYDETRS 77
[Close]
BLAST of jgi.p|Trimin1|156769 vs. uniprot
Match: A0A6L7GVH6_9ACTN (Chaperone protein DnaJ n=18 Tax=Gordonia TaxID=2053 RepID=A0A6L7GVH6_9ACTN)

HSP 1 Score: 71.6 bits (174), Expect = 2.430e-12
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:    1 DFYKALGVATNASGDAVKAAYRTRVKECHPDAMYRKGDTSDAALDEFYLLEEAYSVLSDPGKRSTYDQGRAM 216
            DFYK LGVA++AS + +K AYR   +E HPDA    GDT  AA + F  + EA+SVL+DP KR  YD+ RAM
Sbjct:   11 DFYKDLGVASDASAEEIKKAYRKLARELHPDA--NPGDT--AAEERFKRVSEAHSVLADPEKRKEYDETRAM 78
[Close]
BLAST of jgi.p|Trimin1|156769 vs. uniprot
Match: A0A222TPW9_GORRU (Chaperone protein DnaJ n=42 Tax=Gordonia TaxID=2053 RepID=A0A222TPW9_GORRU)

HSP 1 Score: 71.2 bits (173), Expect = 3.320e-12
Identity = 39/72 (54.17%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:    1 DFYKALGVATNASGDAVKAAYRTRVKECHPDAMYRKGDTSDAALDEFYLLEEAYSVLSDPGKRSTYDQGRAM 216
            DFYK LGVA++AS + +K AYR   +E HPDA    GD+  AA + F  + EA+SVLSDP KR  YD+ RAM
Sbjct:   11 DFYKDLGVASDASAEEIKKAYRKLARELHPDA--NPGDS--AAEERFKRVSEAHSVLSDPEKRKEYDETRAM 78
[Close]
BLAST of jgi.p|Trimin1|156769 vs. uniprot
Match: A0A178XBT0_9PSEU (Chaperone protein DnaJ n=21 Tax=Pseudonocardiaceae TaxID=2070 RepID=A0A178XBT0_9PSEU)

HSP 1 Score: 70.5 bits (171), Expect = 6.180e-12
Identity = 37/72 (51.39%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:    1 DFYKALGVATNASGDAVKAAYRTRVKECHPDAMYRKGDTSDAALDEFYLLEEAYSVLSDPGKRSTYDQGRAM 216
            DFYK LGV+++A+ D +K AYR   KE HPDA    G+T  AA ++F  + EAY VLSDP KR  YD+ R +
Sbjct:   10 DFYKELGVSSDATADEIKKAYRKLAKENHPDA--NAGNT--AAENKFKAVSEAYGVLSDPAKRKEYDEARTL 77
[Close]
BLAST of jgi.p|Trimin1|156769 vs. uniprot
Match: A0A4V2EMI5_9PSEU (Chaperone protein DnaJ n=1 Tax=Amycolatopsis suaedae TaxID=2510978 RepID=A0A4V2EMI5_9PSEU)

HSP 1 Score: 70.1 bits (170), Expect = 8.410e-12
Identity = 35/72 (48.61%), Postives = 46/72 (63.89%), Query Frame = 1 
Query:    1 DFYKALGVATNASGDAVKAAYRTRVKECHPDAMYRKGDTSDAALDEFYLLEEAYSVLSDPGKRSTYDQGRAM 216
            DFY+ LGV+++A+ D +K AYR   KE HPDA       +D A  +F  + EAY VLSDPGKR  YD+ R +
Sbjct:   10 DFYRELGVSSDATSDEIKRAYRKLAKENHPDA----NAGNDKAEQKFKAVSEAYGVLSDPGKRKEYDEARRL 77
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156769 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZL26_9STRA2.250e-72100.00DnaJ domain-containing protein n=1 Tax=Tribonema m... [more]
V8D055_9NOCA3.610e-1354.17Chaperone protein DnaJ n=9 Tax=Corynebacteriales T... [more]
A0A843T3B4_9BACT6.370e-1357.14Chaperone protein DnaJ n=1 Tax=Gemmatimonas sp. Ta... [more]
R7WMQ8_9NOCA9.240e-1354.17Chaperone protein DnaJ n=2 Tax=Rhodococcus rhodnii... [more]
D8LB23_ECTSI1.090e-1243.43Heat shock protein 40 like protein/ DnaJ domain co... [more]
A0A0Q5QV40_9NOCA1.770e-1254.17Chaperone protein DnaJ n=2 Tax=Williamsia TaxID=85... [more]
A0A6L7GVH6_9ACTN2.430e-1254.17Chaperone protein DnaJ n=18 Tax=Gordonia TaxID=205... [more]
A0A222TPW9_GORRU3.320e-1254.17Chaperone protein DnaJ n=42 Tax=Gordonia TaxID=205... [more]
A0A178XBT0_9PSEU6.180e-1251.39Chaperone protein DnaJ n=21 Tax=Pseudonocardiaceae... [more]
A0A4V2EMI5_9PSEU8.410e-1248.61Chaperone protein DnaJ n=1 Tax=Amycolatopsis suaed... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_1contigContig_1:505804..506133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156769|e_gw1.1.287.1
BRITEko00000,ko03029,ko03036,ko03110
KEGG koko:K03686,ko:K05516
GOsGO:0005575,GO:0005618,GO:0005623,GO:0005886,GO:0008150,GO:0010468,GO:0016020,GO:0019222,GO:0030312,GO:0040007,GO:0043388,GO:0044093,GO:0044464,GO:0050789,GO:0051098,GO:0051099,GO:0051101,GO:0060255,GO:0065007,GO:0065009,GO:0071944,GO:2000677,GO:2000679
Preferred namednaJ
DescriptionATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins
COG categoryO
Max annot lvl201174|Actinobacteria
EggNOG OGsCOG0484@1|root,COG0484@2|Bacteria,2GJKK@201174|Actinobacteria,4FUB0@85025|Nocardiaceae
Evalue4.33e-14
Seed ortholog1172185.KB911511_gene3073
Hectar predicted targeting categoryother localisation
TranscriptId157091
TrackFilteredModels1
ProteinId156769
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156769gene_999Tribonema minus UTEX_B_3156 geneContig_1 505804..506133 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_999_1exon_999_1Tribonema minus UTEX_B_3156 exonContig_1 505804..506133 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_999CDS_999Tribonema minus UTEX_B_3156 CDSContig_1 505804..506133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156769Trimin1|156769|e_gw1.1.287.1Tribonema minus UTEX_B_3156 polypeptideContig_1 505804..506133 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_999 ID=mRNA_999|Name=jgi.p|Trimin1|156769|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=330bp|location=Sequence derived from alignment at Contig_1:505804..506133+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACTTTTACAAGGCCTTAGGCGTAGCCACGAATGCGAGTGGGGATGCCGT
GAAGGCGGCGTACCGGACGCGCGTCAAGGAGTGCCACCCGGATGCCATGT
ACCGCAAAGGCGACACGTCGGATGCTGCTCTGGATGAGTTCTACCTGCTG
GAGGAGGCTTACAGCGTGCTGAGCGATCCTGGCAAGAGGTCGACGTACGA
TCAGGGGCGGGCGATGAAGAGAATGGTGGCGTGGCTGGACAAAGGCGACT
GGGGCTCGGCCATGGCGGCGGTGGGGAAAGTGGGGAGGGCGGTGGCGGTG
GACATTGCGGTGCCGTTGGCCAAGGGGTAA
back to top

protein sequence of jgi.p|Trimin1|156769

>Trimin1|156769|e_gw1.1.287.1 ID=Trimin1|156769|e_gw1.1.287.1|Name=jgi.p|Trimin1|156769|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=110bp
DFYKALGVATNASGDAVKAAYRTRVKECHPDAMYRKGDTSDAALDEFYLL
EEAYSVLSDPGKRSTYDQGRAMKRMVAWLDKGDWGSAMAAVGKVGRAVAV
DIAVPLAKG*
back to top

mRNA from alignment at Contig_1:505804..506133+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_999 ID=mRNA_999|Name=jgi.p|Trimin1|156769|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=330bp|location=Sequence derived from alignment at Contig_1:505804..506133+ (Tribonema minus UTEX_B_3156 )
GACTTTTACAAGGCCTTAGGCGTAGCCACGAATGCGAGTGGGGATGCCGT
GAAGGCGGCGTACCGGACGCGCGTCAAGGAGTGCCACCCGGATGCCATGT
ACCGCAAAGGCGACACGTCGGATGCTGCTCTGGATGAGTTCTACCTGCTG
GAGGAGGCTTACAGCGTGCTGAGCGATCCTGGCAAGAGGTCGACGTACGA
TCAGGGGCGGGCGATGAAGAGAATGGTGGCGTGGCTGGACAAAGGCGACT
GGGGCTCGGCCATGGCGGCGGTGGGGAAAGTGGGGAGGGCGGTGGCGGTG
GACATTGCGGTGCCGTTGGCCAAGGGGTAA
back to top

Coding sequence (CDS) from alignment at Contig_1:505804..506133+

>mRNA_999 ID=mRNA_999|Name=jgi.p|Trimin1|156769|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=330bp|location=Sequence derived from alignment at Contig_1:505804..506133+ (Tribonema minus UTEX_B_3156 )
GACTTTTACAAGGCCTTAGGCGTAGCCACGAATGCGAGTGGGGATGCCGT
GAAGGCGGCGTACCGGACGCGCGTCAAGGAGTGCCACCCGGATGCCATGT
ACCGCAAAGGCGACACGTCGGATGCTGCTCTGGATGAGTTCTACCTGCTG
GAGGAGGCTTACAGCGTGCTGAGCGATCCTGGCAAGAGGTCGACGTACGA
TCAGGGGCGGGCGATGAAGAGAATGGTGGCGTGGCTGGACAAAGGCGACT
GGGGCTCGGCCATGGCGGCGGTGGGGAAAGTGGGGAGGGCGGTGGCGGTG
GACATTGCGGTGCCGTTGGCCAAGGGGTAA
back to top