mRNA_9980 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|140545
Unique Name	mRNA_9980
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|140545 vs. uniprot
Match: A0A836CBX8_9STRA (PAS domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBX8_9STRA)

HSP 1 Score: 220 bits (561), Expect = 5.200e-73
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1

Query:    1 QSFVVTDPNLPDNPIVYASQGFLDLTGYARDHVIGRNCRFLQGPNTDQRAVEHVRKGLSEGVDTSVCLLNYKADGTPFWNSFFCAALRDAQRRVVNYVGVQSPV 312
            QSFVVTDPNLPDNPIVYASQGFLDLTGYARDHVIGRNCRFLQGPNTDQRAVEHVRKGLSEGVDTSVCLLNYKADGTPFWNSFFCAALRDAQRRVVNYVGVQSPV
Sbjct:    1 QSFVVTDPNLPDNPIVYASQGFLDLTGYARDHVIGRNCRFLQGPNTDQRAVEHVRKGLSEGVDTSVCLLNYKADGTPFWNSFFCAALRDAQRRVVNYVGVQSPV 104

[Close]

BLAST of jgi.p|Trimin1|140545 vs. uniprot
Match: B8CBB7_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBB7_THAPS)

HSP 1 Score: 174 bits (440), Expect = 1.990e-54
Identity = 79/104 (75.96%), Postives = 89/104 (85.58%), Query Frame = 1

Query:    1 QSFVVTDPNLPDNPIVYASQGFLDLTGYARDHVIGRNCRFLQGPNTDQRAVEHVRKGLSEGVDTSVCLLNYKADGTPFWNSFFCAALRDAQRRVVNYVGVQSPV 312
            Q+F ++DP+LPDNPIVY SQGFLDLTGY  D V+GRNCRFLQGP TDQ AV+ +RKG+ EGVDTSVCLLNYKADGTPFWN FF AALRDA+  VVN+VGVQ  V
Sbjct:    9 QNFAISDPSLPDNPIVYVSQGFLDLTGYTLDQVLGRNCRFLQGPGTDQAAVDVIRKGVREGVDTSVCLLNYKADGTPFWNQFFVAALRDAENNVVNFVGVQCEV 112

[Close]

BLAST of jgi.p|Trimin1|140545 vs. uniprot
Match: B7FYN4_PHATC (Uncharacterized protein PAS n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYN4_PHATC)

HSP 1 Score: 174 bits (441), Expect = 3.520e-54
Identity = 79/104 (75.96%), Postives = 89/104 (85.58%), Query Frame = 1

Query:    1 QSFVVTDPNLPDNPIVYASQGFLDLTGYARDHVIGRNCRFLQGPNTDQRAVEHVRKGLSEGVDTSVCLLNYKADGTPFWNSFFCAALRDAQRRVVNYVGVQSPV 312
            Q+F ++DP LPDNPIVY SQGFLDLTGY  D V+GRNCRFLQGP TDQ AVE +RKG++EGVDTSVCLLNYKADGTPFWN FF A+LRDA+  VVN+VGVQ  V
Sbjct:    9 QNFAISDPTLPDNPIVYVSQGFLDLTGYTLDQVLGRNCRFLQGPGTDQSAVEVIRKGITEGVDTSVCLLNYKADGTPFWNQFFVASLRDAENNVVNHVGVQCEV 112

[Close]

BLAST of jgi.p|Trimin1|140545 vs. uniprot
Match: A0A6T8HFJ5_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8HFJ5_9STRA)

HSP 1 Score: 173 bits (438), Expect = 9.220e-53
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 1

Query:    1 QSFVVTDPNLPDNPIVYASQGFLDLTGYARDHVIGRNCRFLQGPNTDQRAVEHVRKGLSEGVDTSVCLLNYKADGTPFWNSFFCAALRDAQRRVVNYVGVQSPV 312
            Q+F ++DP+LPDNPIVY SQGFLDLTGY  D V+GRNCRFLQGP TDQ AV+ +RKG+ +GVDTSVCLLNYKADGTPFWN FF AALRDA+  VVN+VGVQ  V
Sbjct:   91 QNFAISDPSLPDNPIVYVSQGFLDLTGYTLDQVLGRNCRFLQGPGTDQNAVDVIRKGVRDGVDTSVCLLNYKADGTPFWNQFFVAALRDAENNVVNFVGVQCEV 194

[Close]

BLAST of jgi.p|Trimin1|140545 vs. uniprot
Match: A0A7S0FKQ5_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FKQ5_9STRA)

HSP 1 Score: 174 bits (440), Expect = 9.970e-53
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 1

Query:    1 QSFVVTDPNLPDNPIVYASQGFLDLTGYARDHVIGRNCRFLQGPNTDQRAVEHVRKGLSEGVDTSVCLLNYKADGTPFWNSFFCAALRDAQRRVVNYVGVQSPV 312
            Q+F ++DP+LPDNPIVY SQGFLDLTGY  D V+GRNCRFLQGP TDQ AV+ +RKG+ EG+DTSVCLLNYKADGTPFWN FF AALRDA+  VVN+VGVQ  V
Sbjct:  111 QNFAISDPSLPDNPIVYVSQGFLDLTGYTLDQVLGRNCRFLQGPGTDQAAVDIIRKGIREGIDTSVCLLNYKADGTPFWNQFFVAALRDAENNVVNFVGVQCEV 214

[Close]

BLAST of jgi.p|Trimin1|140545 vs. uniprot
Match: A0A1Z5JS83_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JS83_FISSO)

HSP 1 Score: 176 bits (445), Expect = 1.360e-52
Identity = 80/104 (76.92%), Postives = 88/104 (84.62%), Query Frame = 1

Query:    1 QSFVVTDPNLPDNPIVYASQGFLDLTGYARDHVIGRNCRFLQGPNTDQRAVEHVRKGLSEGVDTSVCLLNYKADGTPFWNSFFCAALRDAQRRVVNYVGVQSPV 312
            Q+F ++DP LPDNPIVY SQGFLDLTGY  D V+GRNCRFLQGP TDQ AV+ +RKG+ EGVDTSVCLLNYKADGTPFWN FF AALRDA+  VVNYVGVQ  V
Sbjct:  189 QNFAISDPTLPDNPIVYVSQGFLDLTGYTLDQVLGRNCRFLQGPGTDQNAVQIIRKGVEEGVDTSVCLLNYKADGTPFWNQFFVAALRDAENNVVNYVGVQCEV 292

[Close]

BLAST of jgi.p|Trimin1|140545 vs. uniprot
Match: A0A7S1H0T5_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H0T5_9STRA)

HSP 1 Score: 174 bits (440), Expect = 2.440e-52
Identity = 79/104 (75.96%), Postives = 89/104 (85.58%), Query Frame = 1

Query:    1 QSFVVTDPNLPDNPIVYASQGFLDLTGYARDHVIGRNCRFLQGPNTDQRAVEHVRKGLSEGVDTSVCLLNYKADGTPFWNSFFCAALRDAQRRVVNYVGVQSPV 312
            Q+F ++DP+LPDNPIVY SQGFLDLTGY  D V+GRNCRFLQGP TDQ AVE +R+G+ EGVDTSVCLLNYKADGTPFWN FF AALRDA+  VVN+VGVQ  V
Sbjct:  148 QNFAISDPSLPDNPIVYVSQGFLDLTGYKLDQVLGRNCRFLQGPGTDQSAVEVIRRGIREGVDTSVCLLNYKADGTPFWNQFFVAALRDAENNVVNFVGVQCEV 251

[Close]

BLAST of jgi.p|Trimin1|140545 vs. uniprot
Match: A0A1E7FI11_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FI11_9STRA)

HSP 1 Score: 176 bits (446), Expect = 2.920e-52
Identity = 80/104 (76.92%), Postives = 89/104 (85.58%), Query Frame = 1

Query:    1 QSFVVTDPNLPDNPIVYASQGFLDLTGYARDHVIGRNCRFLQGPNTDQRAVEHVRKGLSEGVDTSVCLLNYKADGTPFWNSFFCAALRDAQRRVVNYVGVQSPV 312
            Q+F ++DP LPDNPIVY SQGFLDLTGY  D V+GRNCRFLQGP TDQ AV+ +RKG+SEG+DTSVCLLNYKADGTPFWN FF AALRDA+  VVNYVGVQ  V
Sbjct:  237 QNFAISDPTLPDNPIVYVSQGFLDLTGYNLDQVLGRNCRFLQGPGTDQSAVDVIRKGISEGIDTSVCLLNYKADGTPFWNQFFVAALRDAENNVVNYVGVQCEV 340

[Close]

BLAST of jgi.p|Trimin1|140545 vs. uniprot
Match: A0A7S2UAP5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAP5_9STRA)

HSP 1 Score: 174 bits (440), Expect = 7.710e-52
Identity = 79/104 (75.96%), Postives = 89/104 (85.58%), Query Frame = 1

Query:    1 QSFVVTDPNLPDNPIVYASQGFLDLTGYARDHVIGRNCRFLQGPNTDQRAVEHVRKGLSEGVDTSVCLLNYKADGTPFWNSFFCAALRDAQRRVVNYVGVQSPV 312
            Q+F ++DP+LPDNPIVY SQGFLDLTGY  D V+GRNCRFLQGP TDQ AV+ +RKG+ EGVDTSVCLLNYKADGTPFWN FF AALRDA+  VVN+VGVQ  V
Sbjct:  188 QNFAISDPSLPDNPIVYVSQGFLDLTGYTLDQVLGRNCRFLQGPGTDQSAVDVIRKGVREGVDTSVCLLNYKADGTPFWNQFFVAALRDAENNVVNFVGVQCEV 291

[Close]

BLAST of jgi.p|Trimin1|140545 vs. uniprot
Match: A0A7S1VUN1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VUN1_9STRA)

HSP 1 Score: 173 bits (439), Expect = 1.280e-51
Identity = 78/101 (77.23%), Postives = 88/101 (87.13%), Query Frame = 1

Query:    1 QSFVVTDPNLPDNPIVYASQGFLDLTGYARDHVIGRNCRFLQGPNTDQRAVEHVRKGLSEGVDTSVCLLNYKADGTPFWNSFFCAALRDAQRRVVNYVGVQ 303
            Q+F ++DP+LPDNPIVY SQGFLDLTGY  D V+GRNCRFLQGP TDQ AV+ +RKG+ EGVDTSVCLLNYKADGTPFWN FF AALRDA+  VVN+VGVQ
Sbjct:  218 QNFAISDPSLPDNPIVYVSQGFLDLTGYTLDQVLGRNCRFLQGPGTDQSAVDVIRKGIREGVDTSVCLLNYKADGTPFWNQFFVAALRDAENNVVNFVGVQ 318

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|140545 vs. uniprot

BLAST of jgi.p|Trimin1|140545 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A836CBX8_9STRA	5.200e-73	100.00	PAS domain-containing protein (Fragment) n=1 Tax=T...	[more]
B8CBB7_THAPS	1.990e-54	75.96	Uncharacterized protein (Fragment) n=1 Tax=Thalass...	[more]
B7FYN4_PHATC	3.520e-54	75.96	Uncharacterized protein PAS n=2 Tax=Phaeodactylum ...	[more]
A0A6T8HFJ5_9STRA	9.220e-53	75.00	Hypothetical protein n=1 Tax=Proboscia inermis Tax...	[more]
A0A7S0FKQ5_9STRA	9.970e-53	75.00	Hypothetical protein n=1 Tax=Minutocellus polymorp...	[more]
A0A1Z5JS83_FISSO	1.360e-52	76.92	Uncharacterized protein n=2 Tax=Fistulifera solari...	[more]
A0A7S1H0T5_9STRA	2.440e-52	75.96	Hypothetical protein n=2 Tax=Thalassionema nitzsch...	[more]
A0A1E7FI11_9STRA	2.920e-52	76.92	Uncharacterized protein n=1 Tax=Fragilariopsis cyl...	[more]
A0A7S2UAP5_9STRA	7.710e-52	75.96	Hypothetical protein n=1 Tax=Attheya septentrional...	[more]
A0A7S1VUN1_9STRA	1.280e-51	77.23	Hypothetical protein (Fragment) n=1 Tax=Grammatoph...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_52	contig	Contig_52:812313..813057 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|140545\|gw1.52.52.1
Description	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
COG category	T
Max annot lvl	2836\|Bacillariophyta
EggNOG OGs	KOG0610@1\|root,2QPPH@2759\|Eukaryota,2XC7K@2836\|Bacillariophyta
Evalue	5.77e-55
Seed ortholog	2850.Phatr51933
Hectar predicted targeting category	other localisation
TranscriptId	140867
Track	FilteredModels1
ProteinId	140545

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|140545	gene_9980	Tribonema minus UTEX_B_3156	gene	Contig_52 812313..813057 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_9980_1	exon_9980_1	Tribonema minus UTEX_B_3156	exon	Contig_52 812313..812528 +
exon_9980_2	exon_9980_2	Tribonema minus UTEX_B_3156	exon	Contig_52 812962..813057 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_9980	CDS_9980	Tribonema minus UTEX_B_3156	CDS	Contig_52 812313..812528 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|140545	Trimin1\|140545\|gw1.52.52.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_52 812313..813057 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_52:812313..813057+
coding sequence from alignment at Contig_52:812313..813057+

spliced messenger RNA

>mRNA_9980 ID=mRNA_9980|Name=jgi.p|Trimin1|140545|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=312bp|location=Sequence derived from alignment at Contig_52:812313..813057+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGTCCTTCGTGGTCACCGACCCGAACCTCCCGGACAACCCCATTGTGTA
CGCGAGCCAGGGGTTCCTGGACCTGACGGGGTACGCGCGCGACCACGTCA
TCGGGCGTAACTGCCGCTTCCTGCAGGGTCCCAACACGGACCAGCGCGCC
GTGGAGCACGTGCGCAAGGGGCTCAGCGAGGGCGTCGACACGAGCGTGTG
CCTGCTCAACTACAAGGCCGACGGCACGCCGTTCTGGAACAGCTTCTTCT
GCGCCGCGCTGCGCGACGCGCAGCGCCGCGTCGTCAACTACGTCGGCGTG
CAGAGCCCGGTG

protein sequence of jgi.p|Trimin1|140545

>Trimin1|140545|gw1.52.52.1 ID=Trimin1|140545|gw1.52.52.1|Name=jgi.p|Trimin1|140545|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=104bp
QSFVVTDPNLPDNPIVYASQGFLDLTGYARDHVIGRNCRFLQGPNTDQRA
VEHVRKGLSEGVDTSVCLLNYKADGTPFWNSFFCAALRDAQRRVVNYVGV
QSPV

mRNA from alignment at Contig_52:812313..813057+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9980 ID=mRNA_9980|Name=jgi.p|Trimin1|140545|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=745bp|location=Sequence derived from alignment at Contig_52:812313..813057+ (Tribonema minus UTEX_B_3156 )
CAGTCCTTCGTGGTCACCGACCCGAACCTCCCGGACAACCCCATTGTGTA
CGCGAGCCAGGGGTTCCTGGACCTGACGGGGTACGCGCGCGACCACGTCA
TCGGGCGTAACTGCCGCTTCCTGCAGGGTCCCAACACGGACCAGCGCGCC
GTGGAGCACGTGCGCAAGGGGCTCAGCGAGGGCGTCGACACGAGCGTGTG
CCTGCTCAACTACAAGGTGCGACACGCCGCAGCGTACCCTGATTTGTCGG
ACGACCTGTATAATGTGTTGGAGAGGCGACGTCAGTGGACCAACGTTCGG
TGGAGTGCGTGCACTCAGCGGGGGGTGACACGCGCGTGTACCTGCTGAAC
TACAAGTTGTGATGATAAACGTCTCGTTGAATTGGATTATGCCCGACCTA
CCTACTGTAAACTTCGAAGTATATTGCGAGCCGAGCACGGACCAGAGCAG
GCGCTCAGGGGGCTGAGGGAGGGACCGGACGCGTGCGTGCATGTGTCTGC
TCTCAACTACAAGGCGACGCGCCACCGATCATCCCGTTTCAACTCGGGAG
AAACACCGCACTCCGAGCGCCGGAAGCGCGAGGCGGAGGCGCATTTTCTG
ACTCCGCTCCGCGCCGCTGCCGCTGCGTGCGCGCCGCTCCCGCGCGCAGG
CCGACGGCACGCCGTTCTGGAACAGCTTCTTCTGCGCCGCGCTGCGCGAC
GCGCAGCGCCGCGTCGTCAACTACGTCGGCGTGCAGAGCCCGGTG

Coding sequence (CDS) from alignment at Contig_52:812313..813057+

>mRNA_9980 ID=mRNA_9980|Name=jgi.p|Trimin1|140545|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=312bp|location=Sequence derived from alignment at Contig_52:812313..813057+ (Tribonema minus UTEX_B_3156 )
CAGTCCTTCGTGGTCACCGACCCGAACCTCCCGGACAACCCCATTGTGTA
CGCGAGCCAGGGGTTCCTGGACCTGACGGGGTACGCGCGCGACCACGTCA
TCGGGCGTAACTGCCGCTTCCTGCAGGGTCCCAACACGGACCAGCGCGCC
GTGGAGCACGTGCGCAAGGGGCTCAGCGAGGGCGTCGACACGAGCGTGTG
CCTGCTCAACTACAAGGCCGACGGCACGCCGTTCTGGAACAGCTTCTTCT
GCGCCGCGCTGCGCGACGCGCAGCGCCGCGTCGTCAACTACGTCGGCGTG
CAGAGCCCGGTG