mRNA_993 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|373
Unique Name	mRNA_993
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|373 vs. uniprot
Match: A0A835ZH35_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH35_9STRA)

HSP 1 Score: 378 bits (971), Expect = 4.180e-128
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 2

Query:   59 MRWMAFLLLICLSAAAASAGQPREKQRSLVRLLQSSGSGSAATTATGSSXXXXXXXXXXXXXXXXTATGSXXXXXXXXXXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXXXXSGSNKCDQCNSCQCDDNCDCIATASSMQESPRPIDTGFPYNGPCLQDGAVCDVKIPTGPLVPGGSIPVTPSCIHCCKAATFWADATHHCGVEPCWPDGTVCLAGTTCSQCCNTARDALGTKCGGNXXXXXXXXXXXXXXXXXXXGYSWQLSKFFTACN 871
            MRWMAFLLLICLSAAAASAGQPREKQRSLVRLLQSSGSGSAATTATGSSXXXXXXXXXXXXXXXXTATGSXXXXXXXXXXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXXXXSGSNKCDQCNSCQCDDNCDCIATASSMQESPRPIDTGFPYNGPCLQDGAVCDVKIPTGPLVPGGSIPVTPSCIHCCKAATFWADATHHCGVEPCWPDGTVCLAGTTCSQCCNTARDALGTKCGGNXXXXXXXXXXXXXXXXXXXGYSWQLSKFFTACN
Sbjct:    1 MRWMAFLLLICLSAAAASAGQPREKQRSLVRLLQSSGSGSAATTATGSSXXXXXXXXXXXXXXXXTATGSXXXXXXXXXXXXXXXXXXXXXXXXSXXXXXXXXXXXXXXXXXXSGSNKCDQCNSCQCDDNCDCIATASSMQESPRPIDTGFPYNGPCLQDGAVCDVKIPTGPLVPGGSIPVTPSCIHCCKAATFWADATHHCGVEPCWPDGTVCLAGTTCSQCCNTARDALGTKCGGNXXXXXXXXXXXXXXXXXXXGYSWQLSKFFTACN 271

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|373 vs. uniprot

BLAST of jgi.p|Trimin1|373 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835ZH35_9STRA	4.180e-128	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_1	contig	Contig_1:463282..464877 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|373\|CE372_109
Hectar predicted targeting category	chloroplast
TranscriptId	695
Track	FilteredModels1
ProteinId	373

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|373	gene_993	Tribonema minus UTEX_B_3156	gene	Contig_1 463282..464877 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|373	Trimin1\|373\|CE372_109	Tribonema minus UTEX_B_3156	polypeptide	Contig_1 463589..464819 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_993_3	exon_993_3	Tribonema minus UTEX_B_3156	exon	Contig_1 463282..463703 -
exon_993_2	exon_993_2	Tribonema minus UTEX_B_3156	exon	Contig_1 463906..464197 -
exon_993_1	exon_993_1	Tribonema minus UTEX_B_3156	exon	Contig_1 464411..464877 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_993	UTR3_993	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_1 463282..463588 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_993	CDS_993	Tribonema minus UTEX_B_3156	CDS	Contig_1 464411..464819 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_993	UTR5_993	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_1 464820..464877 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_1:463282..464877-
coding sequence from alignment at Contig_1:463282..464877-

spliced messenger RNA

>mRNA_993 ID=mRNA_993|Name=jgi.p|Trimin1|373|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1181bp|location=Sequence derived from alignment at Contig_1:463282..464877- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CACGCCCCCAGACACCCGGACAGCAACCCCCGACCCATTCCCTCTCAGCG
GCTCACTGATGAGGTGGATGGCATTCCTCTTACTGATCTGCCTCAGCGCA
GCTGCGGCTTCGGCAGGGCAGCCCAGGGAGAAGCAGCGCTCCCTGGTCCG
CCTGCTCCAGAGCTCTGGCAGCGGCAGCGCTGCGACGACGGCAACCGGCA
GCAGCAGCGGCAGCACTGCGACCACGGCTACCGGCAGCAGCGGCACTGCG
ACGACGGCAACTGGCAGCGGCAGCGGCAGCGCTGCGACGACGGCAACCGG
CAGCGGCAGCGGCGGCACTGCGACCACGGCTACCGGCAGCAGCGGCACTG
CGACCACAACTGGCAGCGGCAGCGGCACTGCGACGATGACAACCAGCAGC
GGCAGCAATAAGTGTGATCAGTGCAACTCCTGCCAGTGCGACGACAACTG
CGACTGCATCGCCACAGCAAGCAGCATGCAAGAGTCCCCCCGCCCCATCG
ACACTGGTTTTCCTTACAACGGCCCCTGCCTTCAAGACGGGGCCGTCTGT
GACGTCAAGATCCCCACGGGACCACTGGTGCCTGGGGGTTCCATCCCAGT
CACGCCATCGTGCATTCACTGCTGCAAGGCAGCGACCTTCTGGGCCGACG
CCACCCACCATTGCGGGGTGGAGCCGTGTTGGCCGGATGGCACCGTCTGC
CTTGCAGGCACGACCTGCTCCCAGTGCTGCAATACTGCCCGCGACGCGCT
TGGAACAAAGTGCGGCGGCAACTGCTGGGGAGCCGGCACGGTCTGCGGCG
CTGGCACGACGTGCAACTACTGCTGCAACGGCTACAGCTGGCAGTTGAGC
AAGTTCTTCACGGCCTGCAACTGAGCGCCATGCTTCAAGTTGCTGGCGGC
GTTCAAGTTGGTGGGCAACGGTGACTGTAAACGGGAGCAGTGGCGGAGGC
TGTAATTGTGATGGCGGTGGTGGTGGCAAAAGGGGCGTGATGGTCACCAT
CACGCCCCTTCGCGGCACAATAGAGCGGCAGTTGCCTAACAGCGGCGCGC
ACACTCTGTAGCTGTGGCACTGCACGCGGATTCACCTCTTTTGTTAATGT
GTGCACGTGCATGCATACGATTTTCGAAGAGATGCGAGCGATTGCGGTGC
GGTCCGTCAGTAAATTTTCTCTTCTCCGTCA

protein sequence of jgi.p|Trimin1|373

>Trimin1|373|CE372_109 ID=Trimin1|373|CE372_109|Name=jgi.p|Trimin1|373|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=272bp
MRWMAFLLLICLSAAAASAGQPREKQRSLVRLLQSSGSGSAATTATGSSS
GSTATTATGSSGTATTATGSGSGSAATTATGSGSGGTATTATGSSGTATT
TGSGSGTATMTTSSGSNKCDQCNSCQCDDNCDCIATASSMQESPRPIDTG
FPYNGPCLQDGAVCDVKIPTGPLVPGGSIPVTPSCIHCCKAATFWADATH
HCGVEPCWPDGTVCLAGTTCSQCCNTARDALGTKCGGNCWGAGTVCGAGT
TCNYCCNGYSWQLSKFFTACN*

mRNA from alignment at Contig_1:463282..464877-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_993 ID=mRNA_993|Name=jgi.p|Trimin1|373|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1596bp|location=Sequence derived from alignment at Contig_1:463282..464877- (Tribonema minus UTEX_B_3156 )
CACGCCCCCAGACACCCGGACAGCAACCCCCGACCCATTCCCTCTCAGCG
GCTCACTGATGAGGTGGATGGCATTCCTCTTACTGATCTGCCTCAGCGCA
GCTGCGGCTTCGGCAGGGCAGCCCAGGGAGAAGCAGCGCTCCCTGGTCCG
CCTGCTCCAGAGCTCTGGCAGCGGCAGCGCTGCGACGACGGCAACCGGCA
GCAGCAGCGGCAGCACTGCGACCACGGCTACCGGCAGCAGCGGCACTGCG
ACGACGGCAACTGGCAGCGGCAGCGGCAGCGCTGCGACGACGGCAACCGG
CAGCGGCAGCGGCGGCACTGCGACCACGGCTACCGGCAGCAGCGGCACTG
CGACCACAACTGGCAGCGGCAGCGGCACTGCGACGATGACAACCAGCAGC
GGCAGCAATAAGTGTGATCAGTGCAACTCCTGCCAGTGCGACGACAACTG
CGACTGCATCGCCACAGGTCAGTGACACGGTGCGGCTCTGAGACTTGAGA
TCAGTGGCGCAGCCGACACCCGCCGCGTGCGCGCCCAAACCCTGTTATGC
TGCAATTGCTGCTGCGATTACTGCTGCAATCACCTGAAGTAACCGTTTTT
GCACTGACAATGTCTGCACCCGTTGGCGCTGTGTGATGTGTTCGTGCGGG
CGCTCCGCATACGGCCGTGCTGCCCCTCAGCAAGCAGCATGCAAGAGTCC
CCCCGCCCCATCGACACTGGTTTTCCTTACAACGGCCCCTGCCTTCAAGA
CGGGGCCGTCTGTGACGTCAAGATCCCCACGGGACCACTGGTGCCTGGGG
GTTCCATCCCAGTCACGCCATCGTGCATTCACTGCTGCAAGGCAGCGACC
TTCTGGGCCGACGCCACCCACCATTGCGGGGTGGAGCCGTGTTGGCCGGA
TGGCACCGTCTGCCTTGCAGGCACGACCTGCTCCCAGTGCTGCAATACTG
CCCGCGACGCGCTTGGAACAAAGTGAGTGAGCAGCATTTTCAAATGTTCA
AGTTTGCTTTGCGCCAGTATCAGAACCCGTTGCTTGCAAAAGCCTACTTG
ATAAGCTTGTCTCCTGTTGGTGAAAAGAGATATCAATTGAGGGAGGGGGG
CGTGCTCTTGTGGACCACGACCCCCGCTGACAGAGACTGACAAACCAACC
TTCACGGTGTCGCTGCGTCGCCAGGTGCGGCGGCAACTGCTGGGGAGCCG
GCACGGTCTGCGGCGCTGGCACGACGTGCAACTACTGCTGCAACGGCTAC
AGCTGGCAGTTGAGCAAGTTCTTCACGGCCTGCAACTGAGCGCCATGCTT
CAAGTTGCTGGCGGCGTTCAAGTTGGTGGGCAACGGTGACTGTAAACGGG
AGCAGTGGCGGAGGCTGTAATTGTGATGGCGGTGGTGGTGGCAAAAGGGG
CGTGATGGTCACCATCACGCCCCTTCGCGGCACAATAGAGCGGCAGTTGC
CTAACAGCGGCGCGCACACTCTGTAGCTGTGGCACTGCACGCGGATTCAC
CTCTTTTGTTAATGTGTGCACGTGCATGCATACGATTTTCGAAGAGATGC
GAGCGATTGCGGTGCGGTCCGTCAGTAAATTTTCTCTTCTCCGTCA

Coding sequence (CDS) from alignment at Contig_1:463282..464877-

>mRNA_993 ID=mRNA_993|Name=jgi.p|Trimin1|373|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=816bp|location=Sequence derived from alignment at Contig_1:463282..464877- (Tribonema minus UTEX_B_3156 )
ATGAGGTGGATGGCATTCCTCTTACTGATCTGCCTCAGCGCAGCTGCGGC
TTCGGCAGGGCAGCCCAGGGAGAAGCAGCGCTCCCTGGTCCGCCTGCTCC
AGAGCTCTGGCAGCGGCAGCGCTGCGACGACGGCAACCGGCAGCAGCAGC
GGCAGCACTGCGACCACGGCTACCGGCAGCAGCGGCACTGCGACGACGGC
AACTGGCAGCGGCAGCGGCAGCGCTGCGACGACGGCAACCGGCAGCGGCA
GCGGCGGCACTGCGACCACGGCTACCGGCAGCAGCGGCACTGCGACCACA
ACTGGCAGCGGCAGCGGCACTGCGACGATGACAACCAGCAGCGGCAGCAA
TAAGTGTGATCAGTGCAACTCCTGCCAGTGCGACGACAACTGCGACTGCA
TCGCCACAGCAAGCAGCATGCAAGAGTCCCCCCGCCCCATCGACACTGGT
TTTCCTTACAACGGCCCCTGCCTTCAAGACGGGGCCGTCTGTGACGTCAA
GATCCCCACGGGACCACTGGTGCCTGGGGGTTCCATCCCAGTCACGCCAT
CGTGCATTCACTGCTGCAAGGCAGCGACCTTCTGGGCCGACGCCACCCAC
CATTGCGGGGTGGAGCCGTGTTGGCCGGATGGCACCGTCTGCCTTGCAGG
CACGACCTGCTCCCAGTGCTGCAATACTGCCCGCGACGCGCTTGGAACAA
AGTGCGGCGGCAACTGCTGGGGAGCCGGCACGGTCTGCGGCGCTGGCACG
ACGTGCAACTACTGCTGCAACGGCTACAGCTGGCAGTTGAGCAAGTTCTT
CACGGCCTGCAACTGA