mRNA_9902 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154052
Unique NamemRNA_9902
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|154052 vs. uniprot
Match: A0A836CP55_9STRA (TAZ-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP55_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 7.300e-18
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:    1 QGRLLLLLHAQQCSDDGCVLLAKCGAAKTLLQXXXXXXXXXXSVPQXXXXXXXXXXXXXXXXXXXALCAPAR 216
            QGRLLLLLHAQQCSDDGCVLLAKCGAAKTLLQXXXXXXXXXXSVPQXXXXXXXXXXXXXXXXXXXALCAPAR
Sbjct:    1 QGRLLLLLHAQQCSDDGCVLLAKCGAAKTLLQXXXXXXXXXXSVPQXXXXXXXXXXXXXXXXXXXALCAPAR 72
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154052 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CP55_9STRA7.300e-18100.00TAZ-type domain-containing protein (Fragment) n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_129contigContig_129:441262..441477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154052|gw1.129.117.1
Hectar predicted targeting categoryother localisation
TranscriptId154374
TrackFilteredModels1
ProteinId154052
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154052gene_9902Tribonema minus UTEX_B_3156 geneContig_129 441262..441477 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9902_1exon_9902_1Tribonema minus UTEX_B_3156 exonContig_129 441262..441477 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9902CDS_9902Tribonema minus UTEX_B_3156 CDSContig_129 441262..441477 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154052Trimin1|154052|gw1.129.117.1Tribonema minus UTEX_B_3156 polypeptideContig_129 441262..441477 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9902 ID=mRNA_9902|Name=jgi.p|Trimin1|154052|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=216bp|location=Sequence derived from alignment at Contig_129:441262..441477- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGGCCGCCTGCTGCTGCTGCTGCACGCACAGCAGTGCTCAGATGACGG
CTGCGTGCTGCTGGCCAAATGCGGGGCCGCGAAAACCCTTCTGCAGCACC
TGGCGAGCTGCCTCGATGACGGCTGCAGCGTGCCGCAGTGCGCGTCCTCG
CGCGCGCTGCTGGAGCACCACGGCGCGTGTGTCAACTCCGCGTGCGCGCT
GTGCGCCCCCGCGCGC
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protein sequence of jgi.p|Trimin1|154052

>Trimin1|154052|gw1.129.117.1 ID=Trimin1|154052|gw1.129.117.1|Name=jgi.p|Trimin1|154052|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=72bp
QGRLLLLLHAQQCSDDGCVLLAKCGAAKTLLQHLASCLDDGCSVPQCASS
RALLEHHGACVNSACALCAPAR
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mRNA from alignment at Contig_129:441262..441477-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9902 ID=mRNA_9902|Name=jgi.p|Trimin1|154052|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=216bp|location=Sequence derived from alignment at Contig_129:441262..441477- (Tribonema minus UTEX_B_3156 )
CAGGGCCGCCTGCTGCTGCTGCTGCACGCACAGCAGTGCTCAGATGACGG
CTGCGTGCTGCTGGCCAAATGCGGGGCCGCGAAAACCCTTCTGCAGCACC
TGGCGAGCTGCCTCGATGACGGCTGCAGCGTGCCGCAGTGCGCGTCCTCG
CGCGCGCTGCTGGAGCACCACGGCGCGTGTGTCAACTCCGCGTGCGCGCT
GTGCGCCCCCGCGCGC
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Coding sequence (CDS) from alignment at Contig_129:441262..441477-

>mRNA_9902 ID=mRNA_9902|Name=jgi.p|Trimin1|154052|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=216bp|location=Sequence derived from alignment at Contig_129:441262..441477- (Tribonema minus UTEX_B_3156 )
CAGGGCCGCCTGCTGCTGCTGCTGCACGCACAGCAGTGCTCAGATGACGG
CTGCGTGCTGCTGGCCAAATGCGGGGCCGCGAAAACCCTTCTGCAGCACC
TGGCGAGCTGCCTCGATGACGGCTGCAGCGTGCCGCAGTGCGCGTCCTCG
CGCGCGCTGCTGGAGCACCACGGCGCGTGTGTCAACTCCGCGTGCGCGCT
GTGCGCCCCCGCGCGC
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