mRNA_9900 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156153
Unique NamemRNA_9900
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|156153 vs. uniprot
Match: A0A836CM80_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM80_9STRA)

HSP 1 Score: 199 bits (506), Expect = 6.180e-65
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1
Query:    1 RRHRHVLQRQFSEASSPPPEVLRGLNMEGVSLDKRSWLEVRDPQHRYGKLLRLYYSEWDRLGKPGNSFFRWLEQREEGVEGCAREELDRDTVRY 282
            RRHRHVLQRQFSEASSPPPEVLRGLNMEGVSLDKRSWLEVRDPQHRYGKLLRLYYSEWDRLGKPGNSFFRWLEQREEGVEGCAREELDRDTVRY
Sbjct:    1 RRHRHVLQRQFSEASSPPPEVLRGLNMEGVSLDKRSWLEVRDPQHRYGKLLRLYYSEWDRLGKPGNSFFRWLEQREEGVEGCAREELDRDTVRY 94          
BLAST of jgi.p|Trimin1|156153 vs. uniprot
Match: D8LDY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDY1_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 9.980e-35
Identity = 60/95 (63.16%), Postives = 69/95 (72.63%), Query Frame = 1
Query:    1 RRHRHVLQRQFS-EASSPPPEVLRGLNMEGVSLDKRSWLEVRDPQHRYGKLLRLYYSEWDRLGKPGNSFFRWLEQREEGVEGCAREELDRDTVRY 282
            R H   L  Q+S EAS+PPP+VL+G  M  V+LDKRSWLEVRD QHRYGK LRLY+ EWDR GKPG SFF+WL   E  +EGC R EL+ D V Y
Sbjct:   30 REHSSTLYHQYSNEASAPPPQVLQGWKMNCVALDKRSWLEVRDKQHRYGKNLRLYFKEWDRRGKPGGSFFKWLSAAEVQLEGCPRHELESDVVHY 124          
BLAST of jgi.p|Trimin1|156153 vs. uniprot
Match: A0A6H5KBQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBQ8_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 1.510e-31
Identity = 60/95 (63.16%), Postives = 69/95 (72.63%), Query Frame = 1
Query:    1 RRHRHVLQRQFS-EASSPPPEVLRGLNMEGVSLDKRSWLEVRDPQHRYGKLLRLYYSEWDRLGKPGNSFFRWLEQREEGVEGCAREELDRDTVRY 282
            R H   L  Q+S EAS+PPP+VL+G  M  V+LDKRSWLEVRD QHRYGK LRLY+ EWDR GKPG SFF+WL   E  +EGC R EL+ D V Y
Sbjct:  270 REHSSTLYHQYSNEASAPPPQVLQGWKMNCVALDKRSWLEVRDKQHRYGKNLRLYFKEWDRRGKPGGSFFKWLSAAEVQLEGCPRHELESDVVHY 364          
BLAST of jgi.p|Trimin1|156153 vs. uniprot
Match: A0A7S2FAR6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FAR6_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.970e-22
Identity = 44/80 (55.00%), Postives = 54/80 (67.50%), Query Frame = 1
Query:   49 PPPEVLRGLNMEGVS-LDKRSWLEVRDPQHRYGKLLRLYYSEWDRLGKPGNSFFRWLEQRE-EGVEGCAREELDRDTVRY 282
            PPPEVLRG +    S LD+RSWLEV DP+HRY K LR Y+  WD +GKPG+SF  WL   +   +E C R  LD++TV Y
Sbjct:   11 PPPEVLRGFSAGSTSQLDRRSWLEVLDPKHRYAKNLRSYFEAWDLMGKPGDSFLEWLHNEDCMELESCPRSVLDKETVHY 90          
BLAST of jgi.p|Trimin1|156153 vs. uniprot
Match: A0A7S2SKQ1_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKQ1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 8.120e-18
Identity = 39/78 (50.00%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   49 PPPEVLRGLNMEGVSLDKRSWLEVRDPQHRYGKLLRLYYSEWDRLGKPGNSFFRWLEQREEGVEGCAREELDRDTVRY 282
            PP EV RGL      LD+R+WLEV DP+HRY K LR YY  WD L +PG+ F  WL+     ++ C R  L+ DTV Y
Sbjct:  241 PPDEVTRGLREGFSQLDRRAWLEVLDPKHRYAKHLRAYYQAWDLLDRPGSDFLSWLDTAGFELDSCPRSVLEADTVHY 318          
BLAST of jgi.p|Trimin1|156153 vs. uniprot
Match: A0A8H8SBV4_9HELO (IQ domain-containing protein n=1 Tax=Lachnellula occidentalis TaxID=215460 RepID=A0A8H8SBV4_9HELO)

HSP 1 Score: 58.2 bits (139), Expect = 8.380e-8
Identity = 31/66 (46.97%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   94 LDKRSWLEVRDPQHRYGKLLRLYYSEWDRLGKPGNSFFRWLEQREE---GVEGCAREELDRDTVRY 282
            +D + +LE+ D +HRYG  LR+Y+ EW R     N FF WL+  E      EGC RE LDR+ VRY
Sbjct:  207 MDLQYFLEMVDLKHRYGSNLRIYHEEWKRSDTKEN-FFYWLDYGEGRFIDCEGCPRERLDREQVRY 271          
BLAST of jgi.p|Trimin1|156153 vs. uniprot
Match: K1XBU9_MARBU (IQ calmodulin-binding motif protein n=1 Tax=Marssonina brunnea f. sp. multigermtubi (strain MB_m1) TaxID=1072389 RepID=K1XBU9_MARBU)

HSP 1 Score: 58.2 bits (139), Expect = 8.420e-8
Identity = 30/66 (45.45%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   94 LDKRSWLEVRDPQHRYGKLLRLYYSEWDRLGKPGNSFFRWLEQREE---GVEGCAREELDRDTVRY 282
            +D + +LE+ D +HRYG  LR+Y+ EW R     N FF WL+  E      +GC RE LDR+ VRY
Sbjct:  253 MDLQYFLEMVDVKHRYGSNLRIYHEEWKRADTKEN-FFYWLDYGEGRFINCQGCPRERLDREQVRY 317          
BLAST of jgi.p|Trimin1|156153 vs. uniprot
Match: A0A428PPP5_9HYPO (Uncharacterized protein n=6 Tax=Fusarium solani species complex TaxID=232080 RepID=A0A428PPP5_9HYPO)

HSP 1 Score: 56.2 bits (134), Expect = 3.970e-7
Identity = 30/63 (47.62%), Postives = 39/63 (61.90%), Query Frame = 1
Query:  103 RSWLEVRDPQHRYGKLLRLYYSEWDRLGKPGNSFFRWL---EQREEGVEGCAREELDRDTVRY 282
            R +LE+ D +HRYG  L +Y+ EW R     N FF WL   E RE  +EGC R+ L+R+ VRY
Sbjct:  196 RYFLEMVDLKHRYGSSLCMYHEEWKRSNTKEN-FFYWLDYGEGREVELEGCPRDRLEREQVRY 257          
BLAST of jgi.p|Trimin1|156153 vs. uniprot
Match: A0A218ZB15_9HELO (Uncharacterized protein n=1 Tax=Marssonina coronariae TaxID=503106 RepID=A0A218ZB15_9HELO)

HSP 1 Score: 56.2 bits (134), Expect = 4.000e-7
Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   94 LDKRSWLEVRDPQHRYGKLLRLYYSEWDRLGKPGNSFFRWLEQREE---GVEGCAREELDRDTVRY 282
            +D + +LE+ D +HRYG  LR Y+ EW +     N FF WL+  E      +GC+RE LDR+ VRY
Sbjct:  247 MDLQYFLEIVDVKHRYGSNLRTYHEEWAQADTKEN-FFYWLDYGEGRFIDCQGCSRERLDREQVRY 311          
BLAST of jgi.p|Trimin1|156153 vs. uniprot
Match: A0A5N6KKI8_MONLA (Uncharacterized protein n=1 Tax=Monilinia laxa TaxID=61186 RepID=A0A5N6KKI8_MONLA)

HSP 1 Score: 55.5 bits (132), Expect = 7.550e-7
Identity = 29/66 (43.94%), Postives = 40/66 (60.61%), Query Frame = 1
Query:   94 LDKRSWLEVRDPQHRYGKLLRLYYSEWDRLGKPGNSFFRWLEQREE---GVEGCAREELDRDTVRY 282
            +D + +LE+ D +HRYG  LR Y+ EW++     N FF WL+  E      +GC RE LDR+ VRY
Sbjct:  324 MDLQYFLEMVDLKHRYGSNLRTYHEEWNKADTNEN-FFYWLDYGEGRFIDCQGCPRERLDREQVRY 388          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156153 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CM80_9STRA6.180e-65100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D8LDY1_ECTSI9.980e-3563.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KBQ8_9PHAE1.510e-3163.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2FAR6_9STRA5.970e-2255.00Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2SKQ1_9STRA8.120e-1850.00Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
A0A8H8SBV4_9HELO8.380e-846.97IQ domain-containing protein n=1 Tax=Lachnellula o... [more]
K1XBU9_MARBU8.420e-845.45IQ calmodulin-binding motif protein n=1 Tax=Marsso... [more]
A0A428PPP5_9HYPO3.970e-747.62Uncharacterized protein n=6 Tax=Fusarium solani sp... [more]
A0A218ZB15_9HELO4.000e-743.94Uncharacterized protein n=1 Tax=Marssonina coronar... [more]
A0A5N6KKI8_MONLA7.550e-743.94Uncharacterized protein n=1 Tax=Monilinia laxa Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_129contigContig_129:434501..435188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156153|gw1.129.126.1
Max annot lvl2759|Eukaryota
EggNOG OGs28J6G@1|root,2QS9S@2759|Eukaryota
Evalue1.64e-35
Seed ortholog2880.D8LDY1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-23_003360.1
TranscriptId156475
TrackFilteredModels1
ProteinId156153
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156153gene_9900Tribonema minus UTEX_B_3156 geneContig_129 434501..435188 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9900_1exon_9900_1Tribonema minus UTEX_B_3156 exonContig_129 434501..434632 +
exon_9900_2exon_9900_2Tribonema minus UTEX_B_3156 exonContig_129 435039..435188 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9900CDS_9900Tribonema minus UTEX_B_3156 CDSContig_129 434501..434632 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156153Trimin1|156153|gw1.129.126.1Tribonema minus UTEX_B_3156 polypeptideContig_129 434501..435188 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9900 ID=mRNA_9900|Name=jgi.p|Trimin1|156153|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=282bp|location=Sequence derived from alignment at Contig_129:434501..435188+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGGAGGCACAGGCATGTCCTGCAGAGGCAGTTCTCCGAAGCCAGCAGCCC
GCCTCCCGAGGTGCTGCGGGGGCTCAACATGGAGGGAGTGTCGCTCGATA
AGCGCTCGTGGCTGGAAGTGCGAGATCCGCAGCACCGCTACGGCAAGCTG
CTGCGCCTGTACTACTCGGAGTGGGACCGGCTGGGCAAGCCGGGCAACAG
CTTCTTCAGGTGGCTGGAGCAGCGCGAGGAGGGCGTGGAGGGGTGCGCGC
GCGAGGAGCTGGACAGGGACACCGTGCGCTAC
back to top

protein sequence of jgi.p|Trimin1|156153

>Trimin1|156153|gw1.129.126.1 ID=Trimin1|156153|gw1.129.126.1|Name=jgi.p|Trimin1|156153|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=94bp
RRHRHVLQRQFSEASSPPPEVLRGLNMEGVSLDKRSWLEVRDPQHRYGKL
LRLYYSEWDRLGKPGNSFFRWLEQREEGVEGCAREELDRDTVRY
back to top

mRNA from alignment at Contig_129:434501..435188+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9900 ID=mRNA_9900|Name=jgi.p|Trimin1|156153|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=688bp|location=Sequence derived from alignment at Contig_129:434501..435188+ (Tribonema minus UTEX_B_3156 )
AGGAGGCACAGGCATGTCCTGCAGAGGCAGTTCTCCGAAGCCAGCAGCCC GCCTCCCGAGGTGCTGCGGGGGCTCAACATGGAGGGAGTGTCGCTCGATA AGCGCTCGTGGCTGGAAGTGCGAGATCCGCAGGTGCACCATCTATCGCGC ACTTGCGCTTCCCTTGCTCGAGTTACACAGAGCTTATGTAGCTGACAACC TCGGACAACATTCGTGAGCAGGGCGCAGGATTTAGTTGCACGCTGCCAGG CAACTTTATTCTCCTGTTACTGCAGTACTTTTACAGTTCGCGTTTATGCT TTGCTGCGCCACGCCGAAGCCACAGCACAACTTCCATTTGCACCTACCGC AACCCGATGCAGCGCAGAGCATGTCTGCCTCCGCAGCTTGCAACACTTTG CACTTTTGTCTCGTCGAGCTCCACGTACTGCCGGCGCTTGCACTCCCCGT CGCCTCAACGCCAGGCGAGACAAGCACATTGCATTCCAACCACTGCGCTG ACCACGACTGCCGCGCCTGCTGCTCCGCCCGGGCGCAGCACCGCTACGGC AAGCTGCTGCGCCTGTACTACTCGGAGTGGGACCGGCTGGGCAAGCCGGG CAACAGCTTCTTCAGGTGGCTGGAGCAGCGCGAGGAGGGCGTGGAGGGGT GCGCGCGCGAGGAGCTGGACAGGGACACCGTGCGCTAC
back to top

Coding sequence (CDS) from alignment at Contig_129:434501..435188+

>mRNA_9900 ID=mRNA_9900|Name=jgi.p|Trimin1|156153|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=282bp|location=Sequence derived from alignment at Contig_129:434501..435188+ (Tribonema minus UTEX_B_3156 )
AGGAGGCACAGGCATGTCCTGCAGAGGCAGTTCTCCGAAGCCAGCAGCCC
GCCTCCCGAGGTGCTGCGGGGGCTCAACATGGAGGGAGTGTCGCTCGATA
AGCGCTCGTGGCTGGAAGTGCGAGATCCGCAGCACCGCTACGGCAAGCTG
CTGCGCCTGTACTACTCGGAGTGGGACCGGCTGGGCAAGCCGGGCAACAG
CTTCTTCAGGTGGCTGGAGCAGCGCGAGGAGGGCGTGGAGGGGTGCGCGC
GCGAGGAGCTGGACAGGGACACCGTGCGCTAC
back to top