mRNA_9863 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175677
Unique NamemRNA_9863
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|175677 vs. uniprot
Match: A0A835Z9Z5_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Z5_9STRA)

HSP 1 Score: 473 bits (1216), Expect = 1.780e-168
Identity = 238/238 (100.00%), Postives = 238/238 (100.00%), Query Frame = 1 
Query:    1 HHLPVGIGPSVLASDMSRLAEESAEIAQHFKEHDYLHLDVMDGHFVPNLTFGAPVIKSLRKHTKATLDAHLMVSDPAQWVDDMADAGVDRLTFHIEATEDPAALIRRVKGRGMKVGIALKPKTPADCVFPYCEDLDLVLVMTVEPGFGGQSFMADQMAKVRELRKRYPRLSIEVDGGLNAETIDAAAVAGANLIVAGSYVFKGDRALNMSVLRRSVEKHGLGLEDAQLTPLEGGGADQ 714
            HHLPVGIGPSVLASDMSRLAEESAEIAQHFKEHDYLHLDVMDGHFVPNLTFGAPVIKSLRKHTKATLDAHLMVSDPAQWVDDMADAGVDRLTFHIEATEDPAALIRRVKGRGMKVGIALKPKTPADCVFPYCEDLDLVLVMTVEPGFGGQSFMADQMAKVRELRKRYPRLSIEVDGGLNAETIDAAAVAGANLIVAGSYVFKGDRALNMSVLRRSVEKHGLGLEDAQLTPLEGGGADQ
Sbjct:    1 HHLPVGIGPSVLASDMSRLAEESAEIAQHFKEHDYLHLDVMDGHFVPNLTFGAPVIKSLRKHTKATLDAHLMVSDPAQWVDDMADAGVDRLTFHIEATEDPAALIRRVKGRGMKVGIALKPKTPADCVFPYCEDLDLVLVMTVEPGFGGQSFMADQMAKVRELRKRYPRLSIEVDGGLNAETIDAAAVAGANLIVAGSYVFKGDRALNMSVLRRSVEKHGLGLEDAQLTPLEGGGADQ 238
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BLAST of jgi.p|Trimin1|175677 vs. uniprot
Match: A0A6H5JRM9_9PHAE (Ribulose-phosphate 3-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRM9_9PHAE)

HSP 1 Score: 290 bits (743), Expect = 2.970e-96
Identity = 151/227 (66.52%), Postives = 180/227 (79.30%), Query Frame = 1 
Query:   46 MSRLAEESAEIAQHFKEHDYLHLDVMDGHFVPNLTFGAPVIKSLRKHTKATLDAHLMVSDPAQWVDDMADAGVDR-----LTFHIEATEDPAALIRRVKGRGMKVGIALKPKTPADCVFPYCEDLDLVLVMTVEPGFGGQSFMADQ-------MAKVRELRKRYPRLSIEVDGGLNAETIDAAAVAGANLIVAGSYVFKGDRALNMSVLRRSVEKHGLGLEDAQLTP 690
            MSRL EES ++ +  +  DY+HLDVMDGHFVPNLTFGAPVIK LRKHTKA LDAHLMVS PAQWVDDMA AGVDR      TFH+EAT+  A LI  VK +GM+VG+ALKP TP + VFPYC+DLDLVL+MTVEPGFGGQSFM DQ       M+KV+ELR+RYP L IEVDGGL  +TI+ AA AGANLIV GSY+FKG++A  +++L+++VEK+G G +D  LTP
Sbjct:    1 MSRLMEESLDVER--QGADYIHLDVMDGHFVPNLTFGAPVIKGLRKHTKALLDAHLMVSHPAQWVDDMAAAGVDRRVFPLFTFHVEATDKVAELIAAVKAKGMRVGVALKPATPVEEVFPYCDDLDLVLIMTVEPGFGGQSFMVDQARTDIIRMSKVKELRRRYPDLDIEVDGGLADKTIEEAARAGANLIVCGSYIFKGNKAERINLLKQAVEKYGNGKKDEDLTP 225
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BLAST of jgi.p|Trimin1|175677 vs. uniprot
Match: A0A7S0MF64_9CRYP (Ribulose-phosphate 3-epimerase n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MF64_9CRYP)

HSP 1 Score: 278 bits (710), Expect = 1.910e-91
Identity = 144/232 (62.07%), Postives = 173/232 (74.57%), Query Frame = 1 
Query:    1 HHLPVGIGPSVLASDMSRLAEESAEIAQHFKEHDYLHLDVMDGHFVPNLTFGAPVIKSLRKHTKATLDAHLMVSDPAQWVDDMADAGVDRLTFHIEATEDPAALIRRVKGRGMKVGIALKPKTPADCVFPYCEDLDLVLVMTVEPGFGGQSFMADQMAKVRELRKRYPRLSIEVDGGLNAETIDAAAVAGANLIVAGSYVFKGDRALNMSV-LRRSVEKHGLGLEDAQLTPL 693
            H  P  I PS+LA D++ LA E+  +A   ++ DY+HLDVMDGHFVPNL++GAPV+K LR H+KA  D HLMVS+PA+WV DMA+AG D  TFHIEAT+D A LI+ +K  GMKVGIA+KPKTP D VFP+  D+DL+LVMTVEPGFGGQSFM D M KV  LR+RYP L IEVDGG+    IDA A AGAN IVAGS VFK    L   V ++RS+E+ G GL D +LTPL
Sbjct:    6 HVRPPAILPSLLACDLANLAHEANRVAP--EKTDYVHLDVMDGHFVPNLSWGAPVVKCLRPHSKAFFDVHLMVSEPAKWVKDMAEAGADMFTFHIEATDDAAGLIKAIKAAGMKVGIAIKPKTPVDSVFPFVADVDLILVMTVEPGFGGQSFMEDMMPKVATLRERYPALDIEVDGGIGPGNIDACARAGANWIVAGSSVFKAASPLGAIVAMKRSIERLGNGLPDDRLTPL 235
[Close]
BLAST of jgi.p|Trimin1|175677 vs. uniprot
Match: M4C3P1_HYAAE (Ribulose-phosphate 3-epimerase n=26 Tax=Peronosporaceae TaxID=4777 RepID=M4C3P1_HYAAE)

HSP 1 Score: 270 bits (691), Expect = 1.240e-88
Identity = 144/232 (62.07%), Postives = 170/232 (73.28%), Query Frame = 1 
Query:    1 HHLPVGIGPSVLASDMSRLAEESAEIAQHFKEHDYLHLDVMDGHFVPNLTFGAPVIKSLRKHTKATLDAHLMVSDPAQWVDDMADAGVDRLTFHIEATEDPAALIRRVKGRGMKVGIALKPKTPADCVFPYCEDLDLVLVMTVEPGFGGQSFMADQMAKVRELRKRYPRLSIEVDGGLNAETIDAAAVAGANLIVAGSYVFKG-DRALNMSVLRRSVEKHGLGLEDAQLTPL 693
            H     IGPS+LASD+SRL +ES ++       DYLHLDVMDGHFVPN+++G PVIKSLR HTKA  D H+MVS P QWV D+A AG D+ TFH+EAT DP ALI +++  GMKVG+A+KP T A+   P+ E +D+VLVMTVEPGFGGQSFMAD M KV  LR +YP L IEVDGGL   TIDAAA+AGAN+IVAGS VFK  D    +  LR SVEK+G G  D QLT L
Sbjct:    3 HSCTCKIGPSLLASDLSRLKDESLKVVA--AGADYLHLDVMDGHFVPNISWGPPVIKSLRPHTKAFFDCHMMVSKPEQWVLDVAAAGGDQFTFHLEATLDPEALIEQIRSAGMKVGLAIKPGTSAEAAIPFVELVDMVLVMTVEPGFGGQSFMADMMPKVETLRTKYPTLDIEVDGGLGPSTIDAAAMAGANMIVAGSSVFKAVDTKAVILQLRHSVEKYGNGKSDDQLTNL 232
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BLAST of jgi.p|Trimin1|175677 vs. uniprot
Match: A0A8K1CRH6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRH6_PYTOL)

HSP 1 Score: 266 bits (680), Expect = 3.900e-87
Identity = 138/222 (62.16%), Postives = 167/222 (75.23%), Query Frame = 1 
Query:   31 VLASDMSRLAEESAEIAQHFKEHDYLHLDVMDGHFVPNLTFGAPVIKSLRKHTKATLDAHLMVSDPAQWVDDMADAGVDRLTFHIEATEDPAALIRRVKGRGMKVGIALKPKTPADCVFPYCEDLDLVLVMTVEPGFGGQSFMADQMAKVRELRKRYPRLSIEVDGGLNAETIDAAAVAGANLIVAGSYVFKGDR-ALNMSVLRRSVEKHGLGLEDAQLTPL 693
            +LASD+S L +E+ ++       DYLHLDVMDGHFVPN+T+GAPVIKSLR HTKA  D H+MVS P QWV D+ADAG D+ TFH+E+T DP ALI++++  GMKVGIA+KP T    VFPY + +D+VLVMTVEPGFGGQ FM D M KV  LR++YP L IEVDGGL   TIDAAA AGAN+IVAGS VF+ +  A  + V+R SVEKHG G  D +LT L
Sbjct:    1 MLASDLSCLKDEALKVVN--AGADYLHLDVMDGHFVPNITWGAPVIKSLRPHTKAFFDCHMMVSKPEQWVSDIADAGGDQFTFHLESTSDPLALIQQIRDAGMKVGIAIKPGTDVTQVFPYVDKVDMVLVMTVEPGFGGQKFMEDMMPKVSTLREKYPTLDIEVDGGLGPSTIDAAAKAGANMIVAGSSVFRAENPAQAILVMRNSVEKHGNGKSDDELTRL 220
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BLAST of jgi.p|Trimin1|175677 vs. uniprot
Match: A0A2D4BFP7_PYTIN (Ribulose-phosphate 3-epimerase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFP7_PYTIN)

HSP 1 Score: 266 bits (681), Expect = 4.110e-87
Identity = 139/230 (60.43%), Postives = 169/230 (73.48%), Query Frame = 1 
Query:    1 HHLPVGIGPSVLASDMSRLAEESAEIAQHFKEHDYLHLDVMDGHFVPNLTFGAPVIKSLRKHTKATLDAHLMVSDPAQWVDDMADAGVDRLTFHIEATEDPAALIRRVKGRGMKVGIALKPKTPADCVFPYCEDLDLVLVMTVEPGFGGQSFMADQMAKVRELRKRYPRLSIEVDGGLNAETIDAAAVAGANLIVAGSYVFKG-DRALNMSVLRRSVEKHGLGLEDAQLT 687
            H     IGPS+LASD+S L +E+ ++       DYLHLDVMDGHFVPN+T+GAPVIKSLR+HTKA  D H+MV+ P QWV D+ADAG D+ TFH+EAT DP AL ++++  GMKVG+A+KP T  + V PY + +D+VLVMTVEPGFGGQ FMAD M KV  LR ++P L IEVDGGL   TIDAAA AGAN+IVAGS VFK  D A  +  +R SVE+ G G  DA LT
Sbjct:    3 HSCVCKIGPSMLASDLSCLKDEALKVVA--AGADYLHLDVMDGHFVPNITWGAPVIKSLRQHTKAFFDCHMMVAKPEQWVSDIADAGGDQFTFHLEATSDPLALXQQIRDAGMKVGVAIKPGTSVEAVLPYVDKVDMVLVMTVEPGFGGQKFMADMMPKVATLRAKFPTLDIEVDGGLGPSTIDAAAKAGANMIVAGSSVFKASDPAAVILEMRHSVERLGNGKSDAXLT 230
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BLAST of jgi.p|Trimin1|175677 vs. uniprot
Match: A0A7S2XXF9_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXF9_9STRA)

HSP 1 Score: 265 bits (676), Expect = 1.390e-85
Identity = 144/233 (61.80%), Postives = 165/233 (70.82%), Query Frame = 1 
Query:    1 HHLPVGIGPSVLASDMSRLAEESAEIAQHFKEHDYLHLDVMDGHFVPNLTFGAPVIKSLRKHTK--ATLDAHLMVSDPAQWVDDMADAGVDRLTFHIEATEDPAALIRRVKGRGMKVGIALKPKTPADCVFPYCEDLDLVLVMTVEPGFGGQSFMADQMAKVRELRKRYPRLSIEVDGGLNAETIDAAAVAGANLIVAGSYVFKGDRALNMSVLRRSVEKHGLGLEDAQLTPL 693
            H     I PSVLA D+SRLA+ES  +       D +HLDVMDGHFVPNLTFG+PVI  LRK     A LD HLMV+ P +WV+DMA AG D  TFH+EA    A  IR VK  GMKVG+ALKP TP + V P+  DLDLVLVMTVEPGFGGQSFM D M KV ELRKR+P L I+VDGGL   TID AA AGAN+IVAGS V+K D A  +SVL+RSV++ G GL D +L PL
Sbjct:   52 HARSANIAPSVLACDLSRLAQESQRVLD--AGADSVHLDVMDGHFVPNLTFGSPVIACLRKQVPRPALLDVHLMVTYPHKWVEDMAKAGADCFTFHVEAEGQHAETIRAVKAAGMKVGLALKPGTPVESVLPFVPDLDLVLVMTVEPGFGGQSFMVDMMPKVAELRKRFPDLDIQVDGGLGPSTIDEAAAAGANMIVAGSAVYKSDPAHVISVLKRSVQRLGNGLADEELIPL 282
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BLAST of jgi.p|Trimin1|175677 vs. uniprot
Match: L8HLP2_ACACA (Ribulose-phosphate 3-epimerase n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HLP2_ACACA)

HSP 1 Score: 262 bits (670), Expect = 1.520e-85
Identity = 137/216 (63.43%), Postives = 163/216 (75.46%), Query Frame = 1 
Query:   19 IGPSVLASDMSRLAEESAEIAQHFKEH--DYLHLDVMDGHFVPNLTFGAPVIKSLRKHTKATLDAHLMVSDPAQWVDDMADAGVDRLTFHIEATEDPAALIRRVKGRGMKVGIALKPKTPADCVFPYCEDLDLVLVMTVEPGFGGQSFMADQMAKVRELRKRYPRLSIEVDGGLNAETIDAAAVAGANLIVAGSYVFKG-DRALNMSVLRRSVEKH 657
            I PS+L+ D +RLAEE    AQ  K+   D+LH+DVMDGHFVPNLT G PVI+SLRKHT   +D HLMVS P +WVDD   AG   +TFHIE  EDPA  I++VK  GM+VGIALKP T  + + PY +D+D+VLVMTVEPGFGGQ FMADQM+KVRELR +YP L IEVDGGLN +TID AA AGAN+IV+GS VFK  D+   + VLRR+V KH
Sbjct:   10 IAPSLLSGDFARLAEE----AQAMKDAGADWLHMDVMDGHFVPNLTIGPPVIQSLRKHTDMFMDCHLMVSQPEKWVDDFHKAGASSITFHIETVEDPAEFIKKVKSTGMRVGIALKPSTKLETILPYVKDVDMVLVMTVEPGFGGQEFMADQMSKVRELRAQYPTLDIEVDGGLNEKTIDTAAEAGANVIVSGSGVFKAQDKKEAIEVLRRAVNKH 221
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BLAST of jgi.p|Trimin1|175677 vs. uniprot
Match: F2UCI0_SALR5 (Ribulose-phosphate 3-epimerase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UCI0_SALR5)

HSP 1 Score: 262 bits (670), Expect = 3.060e-85
Identity = 135/218 (61.93%), Postives = 160/218 (73.39%), Query Frame = 1 
Query:    7 LPVGIGPSVLASDMSRLAEESAEIAQHFKEHDYLHLDVMDGHFVPNLTFGAPVIKSLRKHTKATLDAHLMVSDPAQWVDDMADAGVDRLTFHIEATEDPAALIRRVKGRGMKVGIALKPKTPADCVFPYCEDLDLVLVMTVEPGFGGQSFMADQMAKVRELRKRYPRLSIEVDGGLNAETIDAAAVAGANLIVAGSYVFKG-DRALNMSVLRRSVEKH 657
            LP  +GPS+LASD+S LA +S +  + +   DYLH+D+MDGHFVPNLT G PV+K LRKHT A LD HLMVS+P  WV DMA AG DR TFH EAT D  ALI  V   GMK G+ +KPKTP D +FPY + +DLVL+MTVEPGFGGQSFM D M KV+ LR + P+L+IEVDGGLN +TID AA AGAN+IVAGS VFK  D  L +  LR  V +H
Sbjct:   28 LPAQVGPSILASDLSMLAADSKKAMEQWTA-DYLHVDIMDGHFVPNLTIGPPVVKCLRKHTTAFLDCHLMVSNPEHWVKDMAAAGADRFTFHFEATNDADALIEEVNKTGMKCGMVIKPKTPVDVLFPYLDRIDLVLIMTVEPGFGGQSFMVDMMDKVKTLRAKSPKLNIEVDGGLNLKTIDTAAKAGANMIVAGSAVFKAEDPKLVVQTLRDKVVQH 244
[Close]
BLAST of jgi.p|Trimin1|175677 vs. uniprot
Match: A0A5D6YAI9_9STRA (Ribulose-phosphate 3-epimerase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YAI9_9STRA)

HSP 1 Score: 261 bits (666), Expect = 8.050e-85
Identity = 136/232 (58.62%), Postives = 168/232 (72.41%), Query Frame = 1 
Query:    1 HHLPVGIGPSVLASDMSRLAEESAEIAQHFKEHDYLHLDVMDGHFVPNLTFGAPVIKSLRKHTKATLDAHLMVSDPAQWVDDMADAGVDRLTFHIEATEDPAALIRRVKGRGMKVGIALKPKTPADCVFPYCEDLDLVLVMTVEPGFGGQSFMADQMAKVRELRKRYPRLSIEVDGGLNAETIDAAAVAGANLIVAGSYVFKG-DRALNMSVLRRSVEKHGLGLEDAQLTPL 693
            H     IGPS+LASD+S L +E+ ++       DYLHLDVMDGHFVPN+T+GAPVIK+LR HT A  D H+MV+ P QWVDD+ADAG ++ TFH+EAT  P ALI +++  GMKVG+A+KP TP + V P  + +D+VL+MTVEPGFGGQSFM D M KV  LR  +P L IEVDGGL   TIDAAA AGAN+IVAGS VF+  D A  +  +R SVE+HG G  D +LT L
Sbjct:    3 HSCVCKIGPSMLASDLSCLRDEARKVVA--AGADYLHLDVMDGHFVPNITWGAPVIKALRPHTDAFFDCHMMVAKPEQWVDDIADAGGNQFTFHLEATTAPLALIEQIRAAGMKVGVAIKPGTPVEQVLPLVDKVDMVLIMTVEPGFGGQSFMPDMMPKVAALRAAFPALDIEVDGGLGPSTIDAAAKAGANMIVAGSSVFRASDPAAVILGMRNSVERHGNGKADDELTKL 232
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175677 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z9Z5_9STRA1.780e-168100.00Ribulose-phosphate 3-epimerase n=1 Tax=Tribonema m... [more]
A0A6H5JRM9_9PHAE2.970e-9666.52Ribulose-phosphate 3-epimerase n=2 Tax=Ectocarpus ... [more]
A0A7S0MF64_9CRYP1.910e-9162.07Ribulose-phosphate 3-epimerase n=1 Tax=Cryptomonas... [more]
M4C3P1_HYAAE1.240e-8862.07Ribulose-phosphate 3-epimerase n=26 Tax=Peronospor... [more]
A0A8K1CRH6_PYTOL3.900e-8762.16Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BFP7_PYTIN4.110e-8760.43Ribulose-phosphate 3-epimerase n=1 Tax=Pythium ins... [more]
A0A7S2XXF9_9STRA1.390e-8561.80Ribulose-phosphate 3-epimerase n=1 Tax=Fibrocapsa ... [more]
L8HLP2_ACACA1.520e-8563.43Ribulose-phosphate 3-epimerase n=1 Tax=Acanthamoeb... [more]
F2UCI0_SALR53.060e-8561.93Ribulose-phosphate 3-epimerase n=1 Tax=Salpingoeca... [more]
A0A5D6YAI9_9STRA8.050e-8558.62Ribulose-phosphate 3-epimerase n=1 Tax=Pythium bra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_129contigContig_129:279615..281624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175677|e_gw1.129.118.1
BRITEko00000,ko00001,ko00002,ko01000
KEGG rclassRC00540
KEGG ReactionR01529
KEGG ModuleM00004,M00007
KEGG Pathwayko00030,ko00040,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00040,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG koko:K01783
EC5.1.3.1
GOsGO:0003674,GO:0003824,GO:0004750,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006081,GO:0006098,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009052,GO:0009056,GO:0009117,GO:0009987,GO:0016052,GO:0016853,GO:0016854,GO:0016857,GO:0019321,GO:0019323,GO:0019362,GO:0019637,GO:0019682,GO:0019693,GO:0030246,GO:0034641,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044262,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046365,GO:0046483,GO:0046496,GO:0046872,GO:0046983,GO:0048029,GO:0051156,GO:0051186,GO:0055086,GO:0071704,GO:0072524,GO:1901135,GO:1901360,GO:1901564,GO:1901575
Preferred nameRPE
Descriptionribulose-phosphate 3-epimerase activity
COG categoryG
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0036@1|root,KOG3111@2759|Eukaryota
Evalue1.32e-109
Seed ortholog2880.D8LR12
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionribulose-phosphate 3-epimerase
Ec32 orthologEc-07_002390.1
TranscriptId175999
TrackFilteredModels1
ProteinId175677
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175677gene_9863Tribonema minus UTEX_B_3156 geneContig_129 279615..281624 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9863_1exon_9863_1Tribonema minus UTEX_B_3156 exonContig_129 279615..279785 +
exon_9863_2exon_9863_2Tribonema minus UTEX_B_3156 exonContig_129 280352..280585 +
exon_9863_3exon_9863_3Tribonema minus UTEX_B_3156 exonContig_129 281313..281624 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9863CDS_9863Tribonema minus UTEX_B_3156 CDSContig_129 279615..279785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175677Trimin1|175677|e_gw1.129.118.1Tribonema minus UTEX_B_3156 polypeptideContig_129 279615..281624 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9863 ID=mRNA_9863|Name=jgi.p|Trimin1|175677|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=717bp|location=Sequence derived from alignment at Contig_129:279615..281624+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CACCACCTGCCTGTGGGCATTGGCCCATCCGTTCTGGCATCAGACATGAG
CCGATTAGCAGAGGAGTCGGCGGAGATAGCTCAGCACTTCAAGGAGCATG
ACTATCTGCACCTGGATGTAATGGACGGCCACTTCGTTCCGAACCTGACG
TTCGGTGCTCCCGTCATCAAGAGCTTGCGGAAGCACACCAAGGCGACGCT
GGACGCGCACCTCATGGTCTCGGACCCCGCGCAGTGGGTGGACGACATGG
CCGACGCGGGCGTGGACAGGCTCACGTTTCACATCGAGGCCACAGAAGAT
CCAGCGGCGCTCATCAGGAGGGTCAAGGGGCGGGGCATGAAGGTGGGCAT
CGCGCTCAAGCCCAAGACGCCCGCGGACTGCGTGTTCCCGTACTGCGAGG
ATCTGGACCTGGTGCTGGTGATGACGGTGGAGCCGGGGTTCGGCGGCCAG
TCGTTCATGGCGGACCAGATGGCGAAGGTGCGCGAGCTGCGCAAGCGCTA
CCCGCGCCTGAGCATCGAGGTCGACGGCGGCCTCAACGCGGAGACGATAG
ACGCCGCCGCCGTTGCGGGCGCGAACCTCATCGTCGCCGGCAGCTACGTG
TTCAAGGGCGACCGCGCGCTCAACATGAGCGTGCTGCGGCGCAGCGTCGA
GAAGCACGGGCTCGGGCTCGAAGACGCGCAGCTGACGCCGCTGGAGGGGG
GCGGGGCGGACCAGTAG
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protein sequence of jgi.p|Trimin1|175677

>Trimin1|175677|e_gw1.129.118.1 ID=Trimin1|175677|e_gw1.129.118.1|Name=jgi.p|Trimin1|175677|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=239bp
HHLPVGIGPSVLASDMSRLAEESAEIAQHFKEHDYLHLDVMDGHFVPNLT
FGAPVIKSLRKHTKATLDAHLMVSDPAQWVDDMADAGVDRLTFHIEATED
PAALIRRVKGRGMKVGIALKPKTPADCVFPYCEDLDLVLVMTVEPGFGGQ
SFMADQMAKVRELRKRYPRLSIEVDGGLNAETIDAAAVAGANLIVAGSYV
FKGDRALNMSVLRRSVEKHGLGLEDAQLTPLEGGGADQ*
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mRNA from alignment at Contig_129:279615..281624+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9863 ID=mRNA_9863|Name=jgi.p|Trimin1|175677|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2010bp|location=Sequence derived from alignment at Contig_129:279615..281624+ (Tribonema minus UTEX_B_3156 )
CACCACCTGCCTGTGGGCATTGGCCCATCCGTTCTGGCATCAGACATGAG
CCGATTAGCAGAGGAGTCGGCGGAGATAGCTCAGCACTTCAAGGAGCATG
ACTATCTGCACCTGGATGTAATGGACGGCCACTTCGTTCCGAACCTGACG
TTCGGTGCTCCCGTCATCAAGGTGGGAGTCTGGCGATACCTGCTGTAGTT
GCGCGATAATCTATGACCAACTTGTTTCCCCCAGAAATTCTGCCAATGGG
TTGCATCTTGAGGCTGGTGCAAATCTGCGACATGCAGTCGGCCTGATGCT
TGTCCCCTGCAGAGCTTTTGCGCCATGACTCTCCTTATCTTTCAAAAGTG
ATGCTGATGAGTACAGCGTTCCAACACGCTTATGCTGTGCTTGTGAGATT
CATTTTGCGCAGCATATGCACATGCAACAAACGCCAGCAGCAAGCCATGG
GTGGGCCTCAGAGTTGCAAGTAGGCTGCACCCGAATGCACTTTGAATTGA
ACTGTCAGCTACACGCGCTGCACACTCATGACACCTCTGACGCACTGCTT
TGGATTGATCGCTGTCGCTGGCGCACTCGCACTCAGCCCCCCCTATCATC
CGTCTCTGTTGAGCGCGTACACCGCTGCTCGCATAGTGCGACCCGCGTCC
AACGCACCAGCCAGCCCCCCCTTTGCGCGCCAACACCCGCCCCACCATCA
CACATACCCTCCCCACGCGCCTCTGCGCGCGCCGCAGAGCTTGCGGAAGC
ACACCAAGGCGACGCTGGACGCGCACCTCATGGTCTCGGACCCCGCGCAG
TGGGTGGACGACATGGCCGACGCGGGCGTGGACAGGCTCACGTTTCACAT
CGAGGCCACAGAAGATCCAGCGGCGCTCATCAGGAGGGTCAAGGGGCGGG
GCATGAAGGTGGGCATCGCGCTCAAGCCCAAGACGCCCGCGGACTGCGTG
TTCCCGTACTGCGAGGATCTGGTGAGTGCAGGTGGCGATGGAATGTTCGA
GGCCTGTGCAGTGCTGGCCACCAAACAACTTTGATGCGGATGCTTGTTGA
TGTTGACAGCAGCACGACTGTACGCGCTGTGTTTGCAGTACCGTAGCTGC
AAGGTTTGCGACGGAGTCATATGCTTTGGGCATTGTGTATTGACGCGTTG
CTGTTGCAATGCTCATAGGGGCCTGCAGTAATAGCTTGTGTGGTATTTGA
ATGCATTAGCGGTATCAGGTGCGTCATTCTTATGCTGTAAGCGTGCTATG
CACTTGAAATCAGTCATACGGATGCACATAACGCAAAGTGCGCAGTGGCT
TGCGTATGATGTGCTGTCACACTGCTGCAGGATGTATAATGATGCATCAG
AGGCAGCAGCCTCGTAGGGTCTCCAGTCACCTTCTTGAATCACTCGACAC
GCCGTCCCACCCCTTTTCTTGCTTTCAACACTGTGGGGTTGTGGGCACTG
TGTCGCATGCCAGCGCACTGCACGACCGACCGCTGCAAAACTCCCCAGCT
CAGCTCAGCTCTCAGAGCACATGTCACATTGCATGATGCTGGCCTTGGCA
GCAGCCTCTTCTCTCTGACCCCAGAGCACCGTACAGCCTCAACTGCATCA
AGCACATCGCGGCCACCGAGCGAACCACATGCAAGCGCACCATCGCGCGC
GTGCGCTCACACACATGCGCCACACGTCGCACCGCACCGCACCCACAGGA
CCTGGTGCTGGTGATGACGGTGGAGCCGGGGTTCGGCGGCCAGTCGTTCA
TGGCGGACCAGATGGCGAAGGTGCGCGAGCTGCGCAAGCGCTACCCGCGC
CTGAGCATCGAGGTCGACGGCGGCCTCAACGCGGAGACGATAGACGCCGC
CGCCGTTGCGGGCGCGAACCTCATCGTCGCCGGCAGCTACGTGTTCAAGG
GCGACCGCGCGCTCAACATGAGCGTGCTGCGGCGCAGCGTCGAGAAGCAC
GGGCTCGGGCTCGAAGACGCGCAGCTGACGCCGCTGGAGGGGGGCGGGGC
GGACCAGTAG
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Coding sequence (CDS) from alignment at Contig_129:279615..281624+

>mRNA_9863 ID=mRNA_9863|Name=jgi.p|Trimin1|175677|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=717bp|location=Sequence derived from alignment at Contig_129:279615..281624+ (Tribonema minus UTEX_B_3156 )
CACCACCTGCCTGTGGGCATTGGCCCATCCGTTCTGGCATCAGACATGAG
CCGATTAGCAGAGGAGTCGGCGGAGATAGCTCAGCACTTCAAGGAGCATG
ACTATCTGCACCTGGATGTAATGGACGGCCACTTCGTTCCGAACCTGACG
TTCGGTGCTCCCGTCATCAAGAGCTTGCGGAAGCACACCAAGGCGACGCT
GGACGCGCACCTCATGGTCTCGGACCCCGCGCAGTGGGTGGACGACATGG
CCGACGCGGGCGTGGACAGGCTCACGTTTCACATCGAGGCCACAGAAGAT
CCAGCGGCGCTCATCAGGAGGGTCAAGGGGCGGGGCATGAAGGTGGGCAT
CGCGCTCAAGCCCAAGACGCCCGCGGACTGCGTGTTCCCGTACTGCGAGG
ATCTGGACCTGGTGCTGGTGATGACGGTGGAGCCGGGGTTCGGCGGCCAG
TCGTTCATGGCGGACCAGATGGCGAAGGTGCGCGAGCTGCGCAAGCGCTA
CCCGCGCCTGAGCATCGAGGTCGACGGCGGCCTCAACGCGGAGACGATAG
ACGCCGCCGCCGTTGCGGGCGCGAACCTCATCGTCGCCGGCAGCTACGTG
TTCAAGGGCGACCGCGCGCTCAACATGAGCGTGCTGCGGCGCAGCGTCGA
GAAGCACGGGCTCGGGCTCGAAGACGCGCAGCTGACGCCGCTGGAGGGGG
GCGGGGCGGACCAGTAG
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