mRNA_9856 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|139145
Unique Name	mRNA_9856
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|139145 vs. uniprot
Match: A0A836CP41_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP41_9STRA)

HSP 1 Score: 602 bits (1551), Expect = 5.210e-217
Identity = 314/314 (100.00%), Postives = 314/314 (100.00%), Query Frame = 1

Query:    1 RDLLLDEFVAAMNSKLDGVSKSAYGDVLLLPRQAFMEMGQLERNDKCLCSLVTLNAARATCPHLRVLFVAHRWDHRGRPDGPKHEHYHTAVSFLDAHPELTHVFVDYSCVSQQQTTTRGYVRRIRAGHLRALPLVATRADALLLLPRREGRQAVRHTDPTEALQRGWVQLELLLARAARTPVHLHFRVGNQSRFVPLDLRASEGVAAXXXXXXXXLLCDGPSAAAAAQRHDRALTFDVARACWSSTPEISAQLEALLDAAKRDLAAVEPQLRRQFLPLRTFDAAFAPASDALLGPVSKDEDRPELLRLLMYAAA 942
            RDLLLDEFVAAMNSKLDGVSKSAYGDVLLLPRQAFMEMGQLERNDKCLCSLVTLNAARATCPHLRVLFVAHRWDHRGRPDGPKHEHYHTAVSFLDAHPELTHVFVDYSCVSQQQTTTRGYVRRIRAGHLRALPLVATRADALLLLPRREGRQAVRHTDPTEALQRGWVQLELLLARAARTPVHLHFRVGNQSRFVPLDLRASEGVAAXXXXXXXXLLCDGPSAAAAAQRHDRALTFDVARACWSSTPEISAQLEALLDAAKRDLAAVEPQLRRQFLPLRTFDAAFAPASDALLGPVSKDEDRPELLRLLMYAAA
Sbjct:    1 RDLLLDEFVAAMNSKLDGVSKSAYGDVLLLPRQAFMEMGQLERNDKCLCSLVTLNAARATCPHLRVLFVAHRWDHRGRPDGPKHEHYHTAVSFLDAHPELTHVFVDYSCVSQQQTTTRGYVRRIRAGHLRALPLVATRADALLLLPRREGRQAVRHTDPTEALQRGWVQLELLLARAARTPVHLHFRVGNQSRFVPLDLRASEGVAAXXXXXXXXLLCDGPSAAAAAQRHDRALTFDVARACWSSTPEISAQLEALLDAAKRDLAAVEPQLRRQFLPLRTFDAAFAPASDALLGPVSKDEDRPELLRLLMYAAA 314

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|139145 vs. uniprot

BLAST of jgi.p|Trimin1|139145 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CP41_9STRA	5.210e-217	100.00	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_129	contig	Contig_129:260089..261030 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|139145\|gw1.129.18.1
Description	tRNA (adenine-N6-)-methyltransferase activity
COG category	V
Max annot lvl	2759\|Eukaryota
EggNOG OGs	COG1720@1\|root,KOG2942@2759\|Eukaryota
Evalue	1.28e-12
Seed ortholog	2880.D7FI01
Hectar predicted targeting category	other localisation
TranscriptId	139467
Track	FilteredModels1
ProteinId	139145

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|139145	gene_9856	Tribonema minus UTEX_B_3156	gene	Contig_129 260089..261030 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_9856_1	exon_9856_1	Tribonema minus UTEX_B_3156	exon	Contig_129 260089..261030 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_9856	CDS_9856	Tribonema minus UTEX_B_3156	CDS	Contig_129 260089..261030 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|139145	Trimin1\|139145\|gw1.129.18.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_129 260089..261030 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_129:260089..261030+
coding sequence from alignment at Contig_129:260089..261030+

spliced messenger RNA

>mRNA_9856 ID=mRNA_9856|Name=jgi.p|Trimin1|139145|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=942bp|location=Sequence derived from alignment at Contig_129:260089..261030+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGGGATCTGCTGCTGGACGAGTTCGTCGCTGCCATGAATAGCAAGCTCGA
TGGTGTGTCGAAATCTGCCTATGGCGACGTGCTGCTGCTCCCCCGGCAAG
CATTCATGGAGATGGGACAGCTGGAGCGCAACGACAAGTGCTTGTGCTCT
CTGGTGACGCTGAATGCGGCGCGGGCGACGTGCCCTCACCTGCGCGTCCT
ATTCGTCGCGCACAGGTGGGACCACAGGGGGCGGCCCGATGGCCCCAAGC
ACGAGCATTACCACACAGCTGTCTCGTTCCTTGACGCCCACCCAGAGCTC
ACCCACGTGTTCGTGGACTACAGCTGCGTGAGCCAGCAGCAGACCACCAC
CAGGGGCTACGTGCGCAGGATCCGCGCAGGGCACCTCCGCGCGCTGCCGC
TGGTCGCGACGCGCGCGGACGCGCTGCTGCTGCTGCCGCGCCGCGAGGGG
CGCCAGGCGGTGCGCCACACCGACCCGACCGAGGCGCTCCAGAGGGGCTG
GGTGCAGCTGGAGCTGCTGCTGGCGCGCGCCGCTCGCACGCCCGTGCACC
TGCACTTCCGCGTAGGAAATCAGTCAAGGTTCGTGCCGCTGGACCTGCGC
GCGTCGGAAGGCGTCGCGGCGGCGGCCGCAGCGGCGGCGGCGGAGCTGCT
GTGCGACGGCCCTTCCGCCGCAGCCGCGGCGCAGCGTCACGATCGGGCGC
TGACGTTCGACGTGGCGCGCGCATGCTGGTCGTCCACGCCTGAGATCAGC
GCGCAACTCGAGGCCCTGCTGGACGCCGCGAAGCGGGACTTGGCGGCAGT
AGAGCCGCAGCTCAGGCGGCAGTTCCTGCCGCTGCGCACGTTTGATGCGG
CATTCGCGCCAGCATCCGATGCGCTGCTGGGACCTGTCAGCAAAGACGAG
GACCGGCCGGAGCTGCTGCGCCTGCTCATGTACGCAGCCGCG

protein sequence of jgi.p|Trimin1|139145

>Trimin1|139145|gw1.129.18.1 ID=Trimin1|139145|gw1.129.18.1|Name=jgi.p|Trimin1|139145|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=314bp
RDLLLDEFVAAMNSKLDGVSKSAYGDVLLLPRQAFMEMGQLERNDKCLCS
LVTLNAARATCPHLRVLFVAHRWDHRGRPDGPKHEHYHTAVSFLDAHPEL
THVFVDYSCVSQQQTTTRGYVRRIRAGHLRALPLVATRADALLLLPRREG
RQAVRHTDPTEALQRGWVQLELLLARAARTPVHLHFRVGNQSRFVPLDLR
ASEGVAAAAAAAAAELLCDGPSAAAAAQRHDRALTFDVARACWSSTPEIS
AQLEALLDAAKRDLAAVEPQLRRQFLPLRTFDAAFAPASDALLGPVSKDE
DRPELLRLLMYAAA

mRNA from alignment at Contig_129:260089..261030+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9856 ID=mRNA_9856|Name=jgi.p|Trimin1|139145|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=942bp|location=Sequence derived from alignment at Contig_129:260089..261030+ (Tribonema minus UTEX_B_3156 )
AGGGATCTGCTGCTGGACGAGTTCGTCGCTGCCATGAATAGCAAGCTCGA
TGGTGTGTCGAAATCTGCCTATGGCGACGTGCTGCTGCTCCCCCGGCAAG
CATTCATGGAGATGGGACAGCTGGAGCGCAACGACAAGTGCTTGTGCTCT
CTGGTGACGCTGAATGCGGCGCGGGCGACGTGCCCTCACCTGCGCGTCCT
ATTCGTCGCGCACAGGTGGGACCACAGGGGGCGGCCCGATGGCCCCAAGC
ACGAGCATTACCACACAGCTGTCTCGTTCCTTGACGCCCACCCAGAGCTC
ACCCACGTGTTCGTGGACTACAGCTGCGTGAGCCAGCAGCAGACCACCAC
CAGGGGCTACGTGCGCAGGATCCGCGCAGGGCACCTCCGCGCGCTGCCGC
TGGTCGCGACGCGCGCGGACGCGCTGCTGCTGCTGCCGCGCCGCGAGGGG
CGCCAGGCGGTGCGCCACACCGACCCGACCGAGGCGCTCCAGAGGGGCTG
GGTGCAGCTGGAGCTGCTGCTGGCGCGCGCCGCTCGCACGCCCGTGCACC
TGCACTTCCGCGTAGGAAATCAGTCAAGGTTCGTGCCGCTGGACCTGCGC
GCGTCGGAAGGCGTCGCGGCGGCGGCCGCAGCGGCGGCGGCGGAGCTGCT
GTGCGACGGCCCTTCCGCCGCAGCCGCGGCGCAGCGTCACGATCGGGCGC
TGACGTTCGACGTGGCGCGCGCATGCTGGTCGTCCACGCCTGAGATCAGC
GCGCAACTCGAGGCCCTGCTGGACGCCGCGAAGCGGGACTTGGCGGCAGT
AGAGCCGCAGCTCAGGCGGCAGTTCCTGCCGCTGCGCACGTTTGATGCGG
CATTCGCGCCAGCATCCGATGCGCTGCTGGGACCTGTCAGCAAAGACGAG
GACCGGCCGGAGCTGCTGCGCCTGCTCATGTACGCAGCCGCG

Coding sequence (CDS) from alignment at Contig_129:260089..261030+

>mRNA_9856 ID=mRNA_9856|Name=jgi.p|Trimin1|139145|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=942bp|location=Sequence derived from alignment at Contig_129:260089..261030+ (Tribonema minus UTEX_B_3156 )
AGGGATCTGCTGCTGGACGAGTTCGTCGCTGCCATGAATAGCAAGCTCGA
TGGTGTGTCGAAATCTGCCTATGGCGACGTGCTGCTGCTCCCCCGGCAAG
CATTCATGGAGATGGGACAGCTGGAGCGCAACGACAAGTGCTTGTGCTCT
CTGGTGACGCTGAATGCGGCGCGGGCGACGTGCCCTCACCTGCGCGTCCT
ATTCGTCGCGCACAGGTGGGACCACAGGGGGCGGCCCGATGGCCCCAAGC
ACGAGCATTACCACACAGCTGTCTCGTTCCTTGACGCCCACCCAGAGCTC
ACCCACGTGTTCGTGGACTACAGCTGCGTGAGCCAGCAGCAGACCACCAC
CAGGGGCTACGTGCGCAGGATCCGCGCAGGGCACCTCCGCGCGCTGCCGC
TGGTCGCGACGCGCGCGGACGCGCTGCTGCTGCTGCCGCGCCGCGAGGGG
CGCCAGGCGGTGCGCCACACCGACCCGACCGAGGCGCTCCAGAGGGGCTG
GGTGCAGCTGGAGCTGCTGCTGGCGCGCGCCGCTCGCACGCCCGTGCACC
TGCACTTCCGCGTAGGAAATCAGTCAAGGTTCGTGCCGCTGGACCTGCGC
GCGTCGGAAGGCGTCGCGGCGGCGGCCGCAGCGGCGGCGGCGGAGCTGCT
GTGCGACGGCCCTTCCGCCGCAGCCGCGGCGCAGCGTCACGATCGGGCGC
TGACGTTCGACGTGGCGCGCGCATGCTGGTCGTCCACGCCTGAGATCAGC
GCGCAACTCGAGGCCCTGCTGGACGCCGCGAAGCGGGACTTGGCGGCAGT
AGAGCCGCAGCTCAGGCGGCAGTTCCTGCCGCTGCGCACGTTTGATGCGG
CATTCGCGCCAGCATCCGATGCGCTGCTGGGACCTGTCAGCAAAGACGAG
GACCGGCCGGAGCTGCTGCGCCTGCTCATGTACGCAGCCGCG