mRNA_9853 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175721
Unique NamemRNA_9853
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|175721 vs. uniprot
Match: A0A836CM98_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM98_9STRA)

HSP 1 Score: 135 bits (340), Expect = 1.890e-40
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 GTRAIRRAHMVVMLNNNPTLLLERFPHHANEIKKSIAKVVTETEGLMTWKEFKVAAETALSQPGGR 198
            GTRAIRRAHMVVMLNNNPTLLLERFPHHANEIKKSIAKVVTETEGLMTWKEFKVAAETALSQPGGR
Sbjct:    1 GTRAIRRAHMVVMLNNNPTLLLERFPHHANEIKKSIAKVVTETEGLMTWKEFKVAAETALSQPGGR 66
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BLAST of jgi.p|Trimin1|175721 vs. uniprot
Match: D8LG54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG54_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.100e-11
Identity = 28/65 (43.08%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    1 GTRAIRRAHMVVMLNNNPTLLLERFPHHANEIKKSIAKVVTETEGLMTWKEFKVAAETALSQPGG 195
            GT+ + +A ++VMLN  P +LLERFPHH + I +++A++ TE++  MT  EF+  A   L + GG
Sbjct:    7 GTQLVSKARLIVMLNERPGILLERFPHHVDNILRAVARMKTESDVGMTLTEFRENAGRVLREAGG 71
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175721 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CM98_9STRA1.890e-40100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LG54_ECTSI1.100e-1143.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_129contigContig_129:254563..254763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175721|e_gw1.129.97.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDimerization-anchoring domain of cAMP-dependent protein kinase, regulatory subunit
Ec32 orthologEc-11_001900.1
TranscriptId176043
TrackFilteredModels1
ProteinId175721
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175721gene_9853Tribonema minus UTEX_B_3156 geneContig_129 254563..254763 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9853_1exon_9853_1Tribonema minus UTEX_B_3156 exonContig_129 254563..254763 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9853CDS_9853Tribonema minus UTEX_B_3156 CDSContig_129 254563..254763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175721Trimin1|175721|e_gw1.129.97.1Tribonema minus UTEX_B_3156 polypeptideContig_129 254563..254763 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9853 ID=mRNA_9853|Name=jgi.p|Trimin1|175721|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=201bp|location=Sequence derived from alignment at Contig_129:254563..254763- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCACTAGGGCGATACGCAGAGCGCACATGGTGGTCATGCTGAACAACAA
CCCCACTCTTCTGCTGGAGCGCTTCCCTCACCATGCAAACGAGATCAAGA
AGAGCATCGCCAAGGTTGTGACAGAGACAGAGGGGCTGATGACGTGGAAG
GAGTTCAAGGTGGCAGCGGAAACCGCGCTGTCGCAACCGGGTGGGAGGTG
A
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protein sequence of jgi.p|Trimin1|175721

>Trimin1|175721|e_gw1.129.97.1 ID=Trimin1|175721|e_gw1.129.97.1|Name=jgi.p|Trimin1|175721|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=67bp
GTRAIRRAHMVVMLNNNPTLLLERFPHHANEIKKSIAKVVTETEGLMTWK
EFKVAAETALSQPGGR*
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mRNA from alignment at Contig_129:254563..254763-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9853 ID=mRNA_9853|Name=jgi.p|Trimin1|175721|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=201bp|location=Sequence derived from alignment at Contig_129:254563..254763- (Tribonema minus UTEX_B_3156 )
GGCACTAGGGCGATACGCAGAGCGCACATGGTGGTCATGCTGAACAACAA
CCCCACTCTTCTGCTGGAGCGCTTCCCTCACCATGCAAACGAGATCAAGA
AGAGCATCGCCAAGGTTGTGACAGAGACAGAGGGGCTGATGACGTGGAAG
GAGTTCAAGGTGGCAGCGGAAACCGCGCTGTCGCAACCGGGTGGGAGGTG
A
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Coding sequence (CDS) from alignment at Contig_129:254563..254763-

>mRNA_9853 ID=mRNA_9853|Name=jgi.p|Trimin1|175721|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=201bp|location=Sequence derived from alignment at Contig_129:254563..254763- (Tribonema minus UTEX_B_3156 )
GGCACTAGGGCGATACGCAGAGCGCACATGGTGGTCATGCTGAACAACAA
CCCCACTCTTCTGCTGGAGCGCTTCCCTCACCATGCAAACGAGATCAAGA
AGAGCATCGCCAAGGTTGTGACAGAGACAGAGGGGCTGATGACGTGGAAG
GAGTTCAAGGTGGCAGCGGAAACCGCGCTGTCGCAACCGGGTGGGAGGTG
A
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