mRNA_9833 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175741
Unique NamemRNA_9833
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|175741 vs. uniprot
Match: A0A835ZH49_9STRA (BEACH domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH49_9STRA)

HSP 1 Score: 811 bits (2095), Expect = 2.230e-297
Identity = 389/389 (100.00%), Postives = 389/389 (100.00%), Query Frame = 1 
Query:    1 RTCRRPLAHVCAVYTRRYRLVDSAMEVFLRRGTKRGLFLDFGVTKGDVDRRNEFVRMLVRFCPRGTLKHWPTEARRLQRLWQGRRISNFDYLMGLNALAGRSYSDLCQYPVFPWVLSCYGAPALDLGDPACYRDLSRPIGALDDARLAEFLERYESFQDPDIPAFMYGSHYSTAVGVVLHFLLRLQPFADLHQSMQNGAFDVPDRLFSSVPRAWALCTSALSEVKELTPEWYCVPDFLRNVNGFELGATQDGERVDDVALPRWAASPEDFIRKHRAALESEHVSENLHHWIDLIFGHKQQGQAAVDAHNVFYYLTYYGAIDLTKIRDDALRRATELQIAHFGQCPMQLFSRPHPPRGRRVLVPRPLATTTQGLDLWRQVRCAVGRAMHS 1167
            RTCRRPLAHVCAVYTRRYRLVDSAMEVFLRRGTKRGLFLDFGVTKGDVDRRNEFVRMLVRFCPRGTLKHWPTEARRLQRLWQGRRISNFDYLMGLNALAGRSYSDLCQYPVFPWVLSCYGAPALDLGDPACYRDLSRPIGALDDARLAEFLERYESFQDPDIPAFMYGSHYSTAVGVVLHFLLRLQPFADLHQSMQNGAFDVPDRLFSSVPRAWALCTSALSEVKELTPEWYCVPDFLRNVNGFELGATQDGERVDDVALPRWAASPEDFIRKHRAALESEHVSENLHHWIDLIFGHKQQGQAAVDAHNVFYYLTYYGAIDLTKIRDDALRRATELQIAHFGQCPMQLFSRPHPPRGRRVLVPRPLATTTQGLDLWRQVRCAVGRAMHS
Sbjct:    1 RTCRRPLAHVCAVYTRRYRLVDSAMEVFLRRGTKRGLFLDFGVTKGDVDRRNEFVRMLVRFCPRGTLKHWPTEARRLQRLWQGRRISNFDYLMGLNALAGRSYSDLCQYPVFPWVLSCYGAPALDLGDPACYRDLSRPIGALDDARLAEFLERYESFQDPDIPAFMYGSHYSTAVGVVLHFLLRLQPFADLHQSMQNGAFDVPDRLFSSVPRAWALCTSALSEVKELTPEWYCVPDFLRNVNGFELGATQDGERVDDVALPRWAASPEDFIRKHRAALESEHVSENLHHWIDLIFGHKQQGQAAVDAHNVFYYLTYYGAIDLTKIRDDALRRATELQIAHFGQCPMQLFSRPHPPRGRRVLVPRPLATTTQGLDLWRQVRCAVGRAMHS 389
[Close]
BLAST of jgi.p|Trimin1|175741 vs. uniprot
Match: A0A6H5KST8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KST8_9PHAE)

HSP 1 Score: 516 bits (1328), Expect = 9.270e-163
Identity = 247/367 (67.30%), Postives = 293/367 (79.84%), Query Frame = 1 
Query:   37 VYTRRYRLVDSAMEVFLRRGTKRGLFLDFGVTKGDVDRRNEFVRMLVRFCPRGTLKHWPTEARRLQRLWQGRRISNFDYLMGLNALAGRSYSDLCQYPVFPWVLSCYGAPALDLGDPACYRDLSRPIGALDDARLAEFLERYESFQDPDIPAFMYGSHYSTAVGVVLHFLLRLQPFADLHQSMQNGAFDVPDRLFSSVPRAWALCTSALSEVKELTPEWYCVPDFLRNVNGFELGATQDGERVDDVALPRWAASPEDFIRKHRAALESEHVSENLHHWIDLIFGHKQQGQAAVDAHNVFYYLTYYGAIDLTKIRDDALRRATELQIAHFGQCPMQLFSRPHPPRGRRVL-VPRPLATTTQGLDLWRQ 1134
            V  RRYRL +SA+EVFLRRG +R LF+DFG    D  RRN+F+R L   CP G+ +   ++A RL + WQ RRISNF+YLMGLN LAGRS++DLCQYPVFPWVLS Y +  LDL D   +RDL +P+GA++  RLAEF++RY SF DPDIP+FMYGSHYSTAVGVVLH+L+RLQPFA+LH+ MQNG FDV DRLFSSV R+W +CTSALSEVKELTPEWY +PDFL NVNGF  G  QDG  ++DV LP WA  P DFI KHRAALES++VS+NLHHWIDLIFG+KQ+G AA  AHNVFYYLTY GA+DL  I+D+ LRRATELQIAHFGQCP QLF RPHP RG+R   VPRP+  + +GL+ WR+
Sbjct: 1717 VRKRRYRLRESALEVFLRRGKRRSLFVDFGPESKDQGRRNDFIRALETRCPSGSSES--SDASRLLKAWQRRRISNFEYLMGLNTLAGRSFNDLCQYPVFPWVLSDYTSDELDLSDDKVFRDLKKPMGAVNPERLAEFIDRYRSFDDPDIPSFMYGSHYSTAVGVVLHYLVRLQPFAELHKEMQNGTFDVADRLFSSVARSWDMCTSALSEVKELTPEWYSLPDFLTNVNGFAFGKAQDGTEINDVQLPPWAGGPADFILKHRAALESDYVSQNLHHWIDLIFGYKQRGPAAEKAHNVFYYLTYSGAVDLANIQDEGLRRATELQIAHFGQCPAQLFGRPHPARGQRGQGVPRPVVASFRGLERWRE 2081
[Close]
BLAST of jgi.p|Trimin1|175741 vs. uniprot
Match: A0A7S3UWD4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWD4_HETAK)

HSP 1 Score: 464 bits (1193), Expect = 1.550e-158
Identity = 231/380 (60.79%), Postives = 275/380 (72.37%), Query Frame = 1 
Query:   19 LAHVCAVYTRRYRLVDSAMEVFLRRGTKRGLFLDFGVTKGDVDRRNEFVRMLVRFCPRGTLKHWPTEA-------RRLQRLWQGRRISNFDYLMGLNALAGRSYSDLCQYPVFPWVLSCYGAPALDLGDPACYRDLSRPIGALDDARLAEFLERYESFQDPD-IPAFMYGSHYSTAVGVVLHFLLRLQPFADLHQSMQNGAFDVPDRLFSSVPRAWALCTSALSEVKELTPEWYCVPDFLRNVNGFELGATQDGERVDDVALPRWAASPEDFIRKHRAALESEHVSENLHHWIDLIFGHKQQGQAAVDAHNVFYYLTYYGAIDLTKIRDDALRRATELQIAHFGQCPMQLFSRPHPPRGRRVLVPRPLATTTQGLDLWRQ 1134
            LA V  VY RRYRL D+A+EVFL  G  R LFLDFG    D  RR+ F   L+   PR   K WP  A        ++   WQ R +SNFDYLM LN LAGRS++DLCQYPVFPWVLS Y    LDL DP  YRDLS+P+GA+++ RL +FLERYESFQ  + +P FMYGSHYSTA G VLH+L+RLQPFA LH ++Q G FDV DRLF+SVP+AW +CT+   EVKELTPEW+ +PDFLRNVN F+ G TQ+G RV DVALP WA +PE+F+   RAALESEHVS  LH W+DLIFG KQQG+AA +A NVF++LTY GA+D +++   A RRATELQIAHFGQCP  LF+ PHPPRG R+ VPRPL       D+W Q
Sbjct:   17 LARVSGVYLRRYRLRDTALEVFLAAGRGRSLFLDFGHRAEDRARRDGFAHALMAAAPRRAYKEWPGTAPAALLAQHQVTARWQRRELSNFDYLMALNTLAGRSFNDLCQYPVFPWVLSNYVEAELDLADPNNYRDLSKPMGAVNEERLRDFLERYESFQGAEGLPPFMYGSHYSTAAGCVLHYLVRLQPFAALHCAIQGGTFDVADRLFASVPQAWEMCTATHCEVKELTPEWFSLPDFLRNVNRFDFGYTQEGRRVGDVALPPWARTPEEFVNVQRAALESEHVSARLHQWVDLIFGCKQQGRAAEEARNVFFHLTYAGAVDTSEM-PPAERRATELQIAHFGQCPRVLFAHPHPPRGARLCVPRPLGAALDVFDMWLQ 395
[Close]
BLAST of jgi.p|Trimin1|175741 vs. uniprot
Match: A0A482SZ90_9ARCH (DUF4704 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SZ90_9ARCH)

HSP 1 Score: 451 bits (1160), Expect = 3.680e-140
Identity = 221/360 (61.39%), Postives = 269/360 (74.72%), Query Frame = 1 
Query:   19 LAHVCAVYTRRYRLVDSAMEVFLRRGTKRGLFLDFGVTKGDVDRRNEFVRMLVRFCPRGTLKHWP-------TEARRLQRLWQGRRISNFDYLMGLNALAGRSYSDLCQYPVFPWVLSCYGAPALDLGDPACYRDLSRPIGALDDARLAEFLERYESFQD---PDIPAFMYGSHYSTAVGVVLHFLLRLQPFADLHQSMQNGAFDVPDRLFSSVPRAWALCTSALSEVKELTPEWYCVPDFLRNVNGFELGATQDGERVDDVALPRWAASPEDFIRKHRAALESEHVSENLHHWIDLIFGHKQQGQAAVDAHNVFYYLTYYGAIDLTKIRDDALRRATELQIAHFGQCPMQLFSRPHPPR 1068
            L+ V A+Y RR+RL DSA+EVF RRG  R  F+DFG TK +  +RN+F + L++  P    K  P            +Q  W   ++SNFDYLM LN LAGRSY+DLCQYPV PWV+S Y + +LDL +P+ YRDLS+P+GAL++ RL EF+ R+ESF++     IPAFMYGSHYST VGVVLHFL+RLQPFA LH+ MQNG FDVPDRLFSS+PR++A  T+ LSEVKEL PEW+  PD  RNVN F+ G TQDG+ + DV LP WA SPEDF+R HR ALES++V+E+LH WIDLIFG+KQ+G  AV+A NVFYYLTYYGA+D   I D+ LRRATELQIAHFGQ PMQLF  PHP R
Sbjct: 1654 LSTVSAIYLRRFRLRDSALEVFFRRGKHRNFFVDFGHTKENAKQRNDFAKALMQAAPNNAFKQTPGMNPFRMVFEHGVQEKWLAGQMSNFDYLMALNTLAGRSYNDLCQYPVMPWVISDYASESLDLKNPSIYRDLSKPMGALNENRLKEFMSRFESFEENISSGIPAFMYGSHYSTMVGVVLHFLVRLQPFAALHREMQNGHFDVPDRLFSSIPRSFAHNTTQLSEVKELIPEWFTTPDMFRNVNHFDFGRTQDGDGIADVELPPWAKSPEDFVRIHREALESDYVTEHLHEWIDLIFGYKQRGPDAVEAKNVFYYLTYYGAVDHYMIEDETLRRATELQIAHFGQVPMQLFKTPHPAR 2013
[Close]
BLAST of jgi.p|Trimin1|175741 vs. uniprot
Match: H3HCX9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HCX9_PHYRM)

HSP 1 Score: 436 bits (1120), Expect = 2.860e-139
Identity = 217/353 (61.47%), Postives = 257/353 (72.80%), Query Frame = 1 
Query:   25 HVCAVYTRRYRLVDSAMEVFLRRGTKRGLFLDFGVTKGDVDRRNEFVRMLVRFCPRGTLKHWPTEA----RRLQRLWQGRRISNFDYLMGLNALAGRSYSDLCQYPVFPWVLSCYGAPALDLGDPACYRDLSRPIGALDDARLAEFLERYESFQDPDIPAFMYGSHYSTAVGVVLHFLLRLQPFADLHQSMQNGAFDVPDRLFSSVPRAWALCTSALSEVKELTPEWYCVPD-FLRNVNGFELGATQDGERVDDVALPRWAASPEDFIRKHRAALESEHVSENLHHWIDLIFGHKQQGQAAVDAHNVFYYLTYYGAIDLTKIRDDALRRATELQIAHFGQCPMQLFSRPHPPR 1068
            H+  VY RRYRL DSA+EVFLR G+    FLDF +T     RRNEFVR+L  F PR T K WP           + WQ R+ISNFDYLM LN  AGRS++DL QYPVFPWVLS Y    LDL DP  +RDLS+P+GAL+ ARL E+ ERY SF DP IP F+YGSHYST  GVVL FL RL+PFA LHQ MQ G FD+ DRLF S+   W +C S +SEVKELTPE++     FLRN NG+ LG   D + V DV LP+WA++PE+F+R HRAALESEHVS +LH WIDLIFG+KQ+G+A++ A+NVFYYLTYYG +DL K+ D  LR + ELQIAHFGQCPMQLF+ PHP R
Sbjct:  377 HLVGVYLRRYRLRDSAIEVFLRNGSTH--FLDFPLTTKQ--RRNEFVRVLYSFLPRSTPKQWPGRVIPHLATTTKAWQNRQISNFDYLMALNTFAGRSFNDLTQYPVFPWVLSNYEDSTLDLSDPHNFRDLSKPVGALNAARLEEYWERYHSFDDPVIPKFLYGSHYSTCAGVVLFFLFRLEPFASLHQKMQGGTFDLSDRLFFSIQETWRMCNSQMSEVKELTPEFFASDGTFLRNRNGYALGKRHDQKVVGDVQLPKWASTPEEFVRIHRAALESEHVSRHLHLWIDLIFGYKQRGRASLQANNVFYYLTYYGVVDLDKVEDPFLRESMELQIAHFGQCPMQLFATPHPKR 725
[Close]
BLAST of jgi.p|Trimin1|175741 vs. uniprot
Match: A0A7S2WRZ9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WRZ9_9STRA)

HSP 1 Score: 428 bits (1101), Expect = 8.460e-136
Identity = 221/422 (52.37%), Postives = 266/422 (63.03%), Query Frame = 1 
Query:   19 LAHVCAVYTRRYRLVDSAMEVFLR-------RGTKRGLFLDFGVTKGD-VDRRNEFVRMLVRFCPRGTLKHWPT----------------------------------------------------EARRLQRLWQGRRISNFDYLMGLNALAGRSYSDLCQYPVFPWVLSCYGAPA-----------LDLGDPACYRDLSRPIGALDDARLAEFLERYESFQDPDIPAFMYGSHYSTAVGVVLHFLLRLQPFADLHQSMQNGAFDVPDRLFSSVPRAWALCTSALSEVKELTPEWYCVPDFLRNVNGFELGATQDGERVDDVALPRWAASPEDFIRKHRAALESEHVSENLHHWIDLIFGHKQQGQAAVDAHNVFYYLTYYGAIDLTKIRDDALRRATELQIAHFGQCPMQLFSRPHPPRG 1071
            L  + A Y R YRL D+A+E+F R       RG    +F DFG  +   V++RN F+R L+          WP+                                                    + R+    WQ R +SNFDYLM LN LAGRS++D+CQYPV PWVL+ Y +             LDL DP+ +RDLS+P+GAL + RLAEFL+RY +FQDPDIP FMYG+HYSTA GVVLH+L+RLQPFA+LH+ +Q G FDV DRLF SV  AW +CTS   EVKELTPEW+  PDFLRNVN F LG TQ G  V DV LP WA+SPEDFIR  R ALES+HVS  LHHWIDLIFG++Q+GQAAV AHNVFYYLTY G +D+++I D  +RRATELQIAHFGQCP QLF+RPHP RG
Sbjct:  349 LKQLSASYLRWYRLRDTAVELFWRQISSSSPRGMPHCVFFDFGCREAQAVEKRNTFLRRLLEHAQNREYVEWPSVLSNVPTSAGSGGSGTQSSGAAVXXXXXXXXXXXSGGSDDVRNMPIHRQRMRQIRKWTIAWQRREVSNFDYLMALNTLAGRSFNDICQYPVMPWVLNQYASRQDMGLSEDEVLPLDLSDPSIFRDLSKPMGALSEPRLAEFLQRYHTFQDPDIPKFMYGNHYSTAAGVVLHYLVRLQPFAELHRELQGGDFDVADRLFKSVHAAWTICTSEAQEVKELTPEWFTTPDFLRNVNRFNLGTTQAGAVVGDVELPAWASSPEDFIRIQREALESDHVSSQLHHWIDLIFGYQQRGQAAVQAHNVFYYLTYAGCVDISQIEDPVMRRATELQIAHFGQCPQQLFTRPHPTRG 770
[Close]
BLAST of jgi.p|Trimin1|175741 vs. uniprot
Match: A0A329RZP4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A329RZP4_9STRA)

HSP 1 Score: 437 bits (1125), Expect = 1.840e-135
Identity = 215/353 (60.91%), Postives = 260/353 (73.65%), Query Frame = 1 
Query:   25 HVCAVYTRRYRLVDSAMEVFLRRGTKRGLFLDFGVTKGDVDRRNEFVRMLVRFCPRGTLKHWPTEA----RRLQRLWQGRRISNFDYLMGLNALAGRSYSDLCQYPVFPWVLSCYGAPALDLGDPACYRDLSRPIGALDDARLAEFLERYESFQDPDIPAFMYGSHYSTAVGVVLHFLLRLQPFADLHQSMQNGAFDVPDRLFSSVPRAWALCTSALSEVKELTPEWYCVPD-FLRNVNGFELGATQDGERVDDVALPRWAASPEDFIRKHRAALESEHVSENLHHWIDLIFGHKQQGQAAVDAHNVFYYLTYYGAIDLTKIRDDALRRATELQIAHFGQCPMQLFSRPHPPR 1068
            H+  VY RRYRL DSA+E+FLR G+    FLDF +T     RRNEFVR+L  F PR T K WP           + WQ R+ISNFDYLM LN  AGRS++DL QYPVFPW+LS Y    LDL DP  +RDLS+P+GAL+ +RL E+ ERY SF DP IP F+YGSHYST  GVVL FL RL+PFA LHQ MQ G+FD+PDRLF S+   W +C S +SEVKELTPE++     FLRN NG+ LG   D + V+DV LP+WA++PE+FIR HRAALESE+VS +LH WIDLIFG+KQ+G+A++ A+NVFYYLTYYG +DL K+ D  LR + ELQIAHFGQCPMQLF+ PHP R
Sbjct: 1835 HLVGVYLRRYRLRDSAIEIFLRNGSNH--FLDFPLTTKQ--RRNEFVRVLYSFLPRSTPKQWPGRVIPHLAATTKAWQNRQISNFDYLMALNTFAGRSFNDLTQYPVFPWILSNYEDSTLDLSDPHNFRDLSKPVGALNASRLEEYWERYHSFDDPVIPKFLYGSHYSTCAGVVLFFLFRLEPFASLHQKMQGGSFDLPDRLFFSIQETWRMCNSQMSEVKELTPEFFASDGTFLRNRNGYALGKRHDQQAVNDVQLPKWASTPEEFIRIHRAALESEYVSRHLHLWIDLIFGYKQRGRASLQANNVFYYLTYYGVVDLDKVEDPFLRESMELQIAHFGQCPMQLFATPHPTR 2183
[Close]
BLAST of jgi.p|Trimin1|175741 vs. uniprot
Match: A0A0W8BWN4_PHYNI (BEACH domain-containing protein lvsC n=14 Tax=Phytophthora TaxID=4783 RepID=A0A0W8BWN4_PHYNI)

HSP 1 Score: 437 bits (1125), Expect = 1.880e-135
Identity = 216/353 (61.19%), Postives = 258/353 (73.09%), Query Frame = 1 
Query:   25 HVCAVYTRRYRLVDSAMEVFLRRGTKRGLFLDFGVTKGDVDRRNEFVRMLVRFCPRGTLKHWPTEA----RRLQRLWQGRRISNFDYLMGLNALAGRSYSDLCQYPVFPWVLSCYGAPALDLGDPACYRDLSRPIGALDDARLAEFLERYESFQDPDIPAFMYGSHYSTAVGVVLHFLLRLQPFADLHQSMQNGAFDVPDRLFSSVPRAWALCTSALSEVKELTPEWYCVP-DFLRNVNGFELGATQDGERVDDVALPRWAASPEDFIRKHRAALESEHVSENLHHWIDLIFGHKQQGQAAVDAHNVFYYLTYYGAIDLTKIRDDALRRATELQIAHFGQCPMQLFSRPHPPR 1068
            H+  VY RRYRL DSA+E+FLR G+    FLDF +T     RRNEFVR+L  F PR T K WP           + WQ R+ISNFDYLM LN  AGRS++DL QYPVFPW+LS Y    LDL DP  +RDLS+P+GAL+ ARL E+ ERY SF DP IP F+YGSHYST  GVVL FL RL+PFA LHQ MQ G FD+PDRLF S+   W +C S +SEVKELTPE++     FLRN NG+ LG   D + V+DV LP+WA +PE+FIR HRAALESE+VS +LH WIDLIFG+KQ+G+A++ A+NVFYYLTYYG +DL K+ D  LR + ELQIAHFGQCPMQLF+ PHP R
Sbjct: 1830 HLVGVYLRRYRLRDSAIEIFLRNGSNH--FLDFPLTTKQ--RRNEFVRVLYSFLPRSTPKQWPGRVIPHLAATTKAWQNRQISNFDYLMALNTFAGRSFNDLTQYPVFPWILSNYEDSTLDLSDPHNFRDLSKPVGALNAARLEEYWERYHSFDDPVIPKFLYGSHYSTCAGVVLFFLFRLEPFASLHQKMQGGTFDLPDRLFFSIQETWRMCNSQMSEVKELTPEFFASDGSFLRNRNGYTLGKRHDQQAVNDVQLPKWANTPEEFIRIHRAALESEYVSRHLHLWIDLIFGYKQRGRASLQANNVFYYLTYYGVVDLDKVEDPFLRESMELQIAHFGQCPMQLFATPHPTR 2178
[Close]
BLAST of jgi.p|Trimin1|175741 vs. uniprot
Match: A0A812SF29_SYMMI (LvsC protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SF29_SYMMI)

HSP 1 Score: 396 bits (1018), Expect = 4.510e-135
Identity = 182/273 (66.67%), Postives = 223/273 (81.68%), Query Frame = 1 
Query:  229 LQRLWQGRRISNFDYLMGLNALAGRSYSDLCQYPVFPWVLSCYGAPALDLGDPACYRDLSRPIGALDDARLAEFLERYESFQDPDIPAFMYGSHYSTAVGVVLHFLLRLQPFADLHQSMQNGAFDVPDRLFSSVPRAWALCTSALSEVKELTPEWYCVPDFLRNVNGFELGATQDGERVDDVALPRWAASPEDFIRKHRAALESEHVSENLHHWIDLIFGHKQQGQAAVDAHNVFYYLTYYGAIDLTKIRDDALRRATELQIAHFGQCPMQLF 1047
            +Q+ W    +SNFDYLM LN +AGRSY+DLCQYPV PW+++ Y    +DL DP+ YRDLS+P+GAL++ RL  F+ER+ESF+D +IP FMYGSHYST VGVVLHFL+RLQPFA LH ++QNG FDVPDRLFSS+PRAW   T+ LSEVKELTPEW+ +P+FLRNVNG+E G  Q  E V DV LP WAAS EDFIR +R ALES++VS +LH WIDLIFG+KQ+G AAV+AHNVFYYLTYYGA++   I D+A R+A +LQIAHFGQCP++LF
Sbjct:   12 VQQKWVNGELSNFDYLMALNTMAGRSYNDLCQYPVMPWIIAQYDKDTIDLNDPSVYRDLSKPVGALNEERLQSFIERFESFKDSEIPPFMYGSHYSTMVGVVLHFLVRLQPFASLHMNIQNGHFDVPDRLFSSIPRAWEHNTTMLSEVKELTPEWFTLPEFLRNVNGYEFGKMQSHESVGDVELPPWAASAEDFIRINREALESDYVSAHLHEWIDLIFGYKQRGPAAVEAHNVFYYLTYYGAVNRDIIVDEATRKAIDLQIAHFGQCPVELF 284
[Close]
BLAST of jgi.p|Trimin1|175741 vs. uniprot
Match: A0A5D6YHI3_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YHI3_9STRA)

HSP 1 Score: 436 bits (1122), Expect = 4.680e-135
Identity = 221/373 (59.25%), Postives = 263/373 (70.51%), Query Frame = 1 
Query:    1 RTCRRPLAHVCAVYTRRYRLVDSAMEVFLRRGTKRGLFLDFGVTKGDVDRRNEFVRMLVRFCPRGTLKHWPTEA----RRLQRLWQGRRISNFDYLMGLNALAGRSYSDLCQYPVFPWVLSCYGAPALDLGDPACYRDLSRPIGALDDARLAEFLERYESFQDPDIPAFMYGSHYSTAVGVVLHFLLRLQPFADLHQSMQNGAFDVPDRLFSSVPRAWALCTSALSEVKELTPEWYCVPDFLRNVNGFELGATQDGERVDDVALPRWAASPEDFIRKHRAALESEHVSENLHHWIDLIFGHKQQGQAAVDAHNVFYYLTYYGAIDLTKIRDDALRRATELQIAHFGQCPMQLFSRPHPPRGRRVLVPRPLATT 1107
            R  R P  HV AVY RRYRL DSA+E+FLR G+    FLDF +      +RNE  R+L  F PR   K WP           + WQ R+ISNF+YLM LN  AGRS++DL QYPVFPWVLS Y + ALDL DP  +RDLS+P+GAL+ ARL E+ ERY SF DP IP F+YGSHYST  GVVL FL RLQPFA+L + MQ G FD+PDRLF SV   W +C S +SEVKELTPE++C  +FLRNVN F LG   D + V+DV LP WAA+PE+F+R +RAALESE VS++LH W+DLIFG KQ+G+AA+ AHNVFYYLTYYG +DL +I D  L+ + ELQIAHFGQCPMQLF  PHP R       R  A T
Sbjct: 1906 RCWRWPYHHVVAVYLRRYRLRDSALEIFLRNGSSH--FLDFPLAARH--QRNELARLLYSFLPRSVPKQWPGRGVPNLSATTKAWQSRQISNFEYLMALNTFAGRSFNDLTQYPVFPWVLSNYDSDALDLSDPRNFRDLSKPMGALNPARLDEYWERYNSFDDPVIPKFLYGSHYSTCAGVVLFFLFRLQPFAELQRRMQGGGFDLPDRLFYSVKETWDMCNSQMSEVKELTPEFFCDANFLRNVNRFPLGKRHDRQVVNDVQLPPWAATPEEFVRINRAALESELVSQHLHEWLDLIFGFKQRGKAALRAHNVFYYLTYYGVVDLDRIDDPFLKESMELQIAHFGQCPMQLFGAPHPKRSTVAFTRRTPALT 2274
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175741 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZH49_9STRA2.230e-297100.00BEACH domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5KST8_9PHAE9.270e-16367.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3UWD4_HETAK1.550e-15860.79Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A482SZ90_9ARCH3.680e-14061.39DUF4704 domain-containing protein n=1 Tax=archaeon... [more]
H3HCX9_PHYRM2.860e-13961.47Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A7S2WRZ9_9STRA8.460e-13652.37Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A329RZP4_9STRA1.840e-13560.91Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A0W8BWN4_PHYNI1.880e-13561.19BEACH domain-containing protein lvsC n=14 Tax=Phyt... [more]
A0A812SF29_SYMMI4.510e-13566.67LvsC protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
A0A5D6YHI3_9STRA4.680e-13559.25Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_129contigContig_129:144001..147028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175741|e_gw1.129.41.1
Descriptionplatelet formation
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1787@1|root,KOG1787@2759|Eukaryota
Evalue2.2e-163
Seed ortholog2880.D8LFY8
Hectar predicted targeting categoryother localisation
TranscriptId176063
TrackFilteredModels1
ProteinId175741
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175741gene_9833Tribonema minus UTEX_B_3156 geneContig_129 144001..147028 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175741Trimin1|175741|e_gw1.129.41.1Tribonema minus UTEX_B_3156 polypeptideContig_129 144001..147028 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9833_5exon_9833_5Tribonema minus UTEX_B_3156 exonContig_129 144001..144159 -
exon_9833_4exon_9833_4Tribonema minus UTEX_B_3156 exonContig_129 144723..144909 -
exon_9833_3exon_9833_3Tribonema minus UTEX_B_3156 exonContig_129 145230..145563 -
exon_9833_2exon_9833_2Tribonema minus UTEX_B_3156 exonContig_129 146044..146353 -
exon_9833_1exon_9833_1Tribonema minus UTEX_B_3156 exonContig_129 146849..147028 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9833CDS_9833Tribonema minus UTEX_B_3156 CDSContig_129 146849..147028 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9833 ID=mRNA_9833|Name=jgi.p|Trimin1|175741|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1170bp|location=Sequence derived from alignment at Contig_129:144001..147028- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCACCTGCCGCAGGCCGCTGGCCCACGTGTGCGCGGTGTACACGCGGCG
CTACCGCCTCGTGGACAGCGCGATGGAGGTCTTCCTGCGCCGCGGCACCA
AGCGCGGACTGTTCCTGGACTTTGGCGTCACCAAGGGCGACGTCGACCGC
AGGAATGAGTTCGTCAGGATGCTCGTGCGGTTCTGCCCGCGCGGCACCCT
CAAGCACTGGCCCACGGAGGCGCGCCGCCTGCAGCGTCTCTGGCAGGGGC
GCCGCATCTCCAACTTCGACTACCTCATGGGCCTCAACGCGCTCGCGGGC
CGCAGCTACAGCGACCTGTGCCAGTACCCCGTCTTCCCCTGGGTGCTCTC
GTGCTACGGCGCGCCGGCGCTCGACCTGGGCGACCCCGCGTGCTACCGCG
ACCTGAGCCGCCCCATCGGCGCGCTGGACGACGCGCGCCTCGCCGAGTTC
CTCGAGCGCTACGAGTCATTCCAGGACCCCGACATCCCCGCCTTCATGTA
CGGCAGCCACTACAGCACGGCTGTGGGCGTCGTCCTCCACTTCCTCCTGC
GCCTGCAGCCGTTCGCGGACCTCCACCAGAGCATGCAGAACGGCGCGTTC
GACGTGCCGGACCGCCTCTTCTCGAGCGTCCCGCGCGCGTGGGCGCTGTG
CACGAGCGCGCTCTCCGAGGTCAAGGAGCTCACGCCGGAGTGGTACTGCG
TGCCGGACTTCCTGCGCAACGTCAACGGCTTTGAGCTCGGCGCGACGCAG
GACGGCGAGCGCGTGGACGACGTCGCGCTGCCGCGCTGGGCCGCGTCGCC
GGAGGACTTCATCCGGAAGCACAGGGCGGCGCTCGAGAGCGAGCACGTGA
GCGAGAACCTCCACCACTGGATCGACCTCATCTTCGGGCACAAGCAGCAG
GGGCAGGCGGCGGTTGACGCGCACAACGTCTTCTACTACCTGACGTACTA
CGGCGCGATCGACCTCACCAAGATCCGCGACGACGCGCTGCGCCGCGCCA
CCGAGCTGCAGATTGCGCACTTTGGCCAGTGCCCGATGCAGCTCTTCTCG
CGCCCGCACCCGCCGCGCGGCCGCCGCGTCCTCGTGCCGCGCCCGCTCGC
GACAACGACGCAGGGGCTGGACCTGTGGCGCCAGGTGCGCTGTGCTGTGG
GTCGTGCGATGCACAGTTGA
back to top

protein sequence of jgi.p|Trimin1|175741

>Trimin1|175741|e_gw1.129.41.1 ID=Trimin1|175741|e_gw1.129.41.1|Name=jgi.p|Trimin1|175741|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=390bp
RTCRRPLAHVCAVYTRRYRLVDSAMEVFLRRGTKRGLFLDFGVTKGDVDR
RNEFVRMLVRFCPRGTLKHWPTEARRLQRLWQGRRISNFDYLMGLNALAG
RSYSDLCQYPVFPWVLSCYGAPALDLGDPACYRDLSRPIGALDDARLAEF
LERYESFQDPDIPAFMYGSHYSTAVGVVLHFLLRLQPFADLHQSMQNGAF
DVPDRLFSSVPRAWALCTSALSEVKELTPEWYCVPDFLRNVNGFELGATQ
DGERVDDVALPRWAASPEDFIRKHRAALESEHVSENLHHWIDLIFGHKQQ
GQAAVDAHNVFYYLTYYGAIDLTKIRDDALRRATELQIAHFGQCPMQLFS
RPHPPRGRRVLVPRPLATTTQGLDLWRQVRCAVGRAMHS*
back to top

mRNA from alignment at Contig_129:144001..147028-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9833 ID=mRNA_9833|Name=jgi.p|Trimin1|175741|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3028bp|location=Sequence derived from alignment at Contig_129:144001..147028- (Tribonema minus UTEX_B_3156 )
CGCACCTGCCGCAGGCCGCTGGCCCACGTGTGCGCGGTGTACACGCGGCG
CTACCGCCTCGTGGACAGCGCGATGGAGGTCTTCCTGCGCCGCGGCACCA
AGCGCGGACTGTTCCTGGACTTTGGCGTCACCAAGGGCGACGTCGACCGC
AGGAATGAGTTCGTCAGGATGCTCGTGCGGGTGCGTGGCGATGCCTCACT
GCGCTGCGCGGTGTGGTGTGTGCCAGTCGTTGCTGCTCGGTCTGGACGTT
GTTGAACTTCAAGTTTGAGGGTGGTCCTGAAAGATTTTGGCTCGCTGTCG
TCTTGGCACGCCCGCATAGGCCTGTGGTTCCGATTGCCCCACAGCACGAC
TGTCTGTGTGCGGAATGCAAGCCATGCACTGCGAGGCAACACACAGTGGC
GGCAGCTTCCTCCAGGCACAGTCGCTATGCACAGCGCAAGGAAGCGCATC
AAGTCAGCTGCAGTGTACCGTGCTCTTCGACTTTCGTGACACCTTTTGGG
TGTTGAAAGCGGCAGCACATCTCCTCTCCAGCCAATCTACAACTGCTACC
CCCTACCCGACCCTTTCAGACCACTCTTGCAGCCTGGTTGTTGGCCACGT
GCGGCACATGAACTTACGCTGAAGCTCACATCCCAACGTGCACTTCATCC
CCCCCCCCCCTCCCGCCCCCCCCAGTTCTGCCCGCGCGGCACCCTCAAGC
ACTGGCCCACGGAGGCGCGCCGCCTGCAGCGTCTCTGGCAGGGGCGCCGC
ATCTCCAACTTCGACTACCTCATGGGCCTCAACGCGCTCGCGGGCCGCAG
CTACAGCGACCTGTGCCAGTACCCCGTCTTCCCCTGGGTGCTCTCGTGCT
ACGGCGCGCCGGCGCTCGACCTGGGCGACCCCGCGTGCTACCGCGACCTG
AGCCGCCCCATCGGCGCGCTGGACGACGCGCGCCTCGCCGAGTTCCTCGA
GCGCTACGAGTCATTCCAGGACCCCGACATCCCCGGTGAGTGCGCTGGGA
TGGGGGGGCGCAGGGGGGGGGGGGGGGGGGGGGGCGTCAGGGGGTCAGGG
GTGGACGCAGTGGCTGGTGCGTGCATCGCCGCAAGAGACTGCTGCATGCG
TTGCGTGCGGTTTAACACGTGCAGGTGCTGCTTTGAGCTCCTCGCATCCC
TGCGGTGGTCAGCGTGGCCGCTTCCTCCATCGCTTTCTGACGGCTGCTCC
TCAGGCAACCAACCTCTCGCCGGAGTAGAGTGCGGCACCCATCACCTCGC
TGGGCCGTGCAAGTCAACACTTTTGCAGCCCCCCCCCTTTGCATTCGCCG
CCCTCCCCGTTCCCAGCATCTGTGCGAGCGGAGGCCACCGCAGCATGGCT
GTCGCTCTCATTTTGGCGCGCCTGCATCTCCGCACGACCTCGCATGCTGC
CCCATGTCACGCACTTCACCCCCCCCTCTCCCACCACCCCCGCCCCCCCC
CTCCCCCCCCTGCAGCCTTCATGTACGGCAGCCACTACAGCACGGCTGTG
GGCGTCGTCCTCCACTTCCTCCTGCGCCTGCAGCCGTTCGCGGACCTCCA
CCAGAGCATGCAGAACGGCGCGTTCGACGTGCCGGACCGCCTCTTCTCGA
GCGTCCCGCGCGCGTGGGCGCTGTGCACGAGCGCGCTCTCCGAGGTCAAG
GAGCTCACGCCGGAGTGGTACTGCGTGCCGGACTTCCTGCGCAACGTCAA
CGGCTTTGAGCTCGGCGCGACGCAGGACGGCGAGCGCGTGGACGACGTCG
CGCTGCCGCGCTGGGCCGCGTCGCCGGAGGACTTCATCCGGAAGCACAGG
TGAGGGGGGGGGGGGGCTGCGGGCGCCGCAGGGGGGTGCGCTCTGGCGGT
GGCGGCGGCAGCAGCCGCAGCGGTTCGGCTGTGGCGGCAGCGGCAGCAGC
CGCGGCGGCGGCGGTGTCGTTAAGCGTGACAGCAGCGCCTCGCTGCTGTG
TGCGGCAGCGTGACGCGTTGGGAGTGTCGGTGCACTGCGGCGGCGGCGGC
GGCGGCAGGCTCAACGCAGAAGCAGCTCAGGGCTGTCTTGAACGGTAGCA
CCAGAGAAACTCGGCGAAGCGCCTGCTGATGCTCCTCCCCCCCCCCCCCC
CCCCCCCTCCTCCCCCCAGGGCGGCGCTCGAGAGCGAGCACGTGAGCGAG
AACCTCCACCACTGGATCGACCTCATCTTCGGGCACAAGCAGCAGGGGCA
GGCGGCGGTTGACGCGCACAACGTCTTCTACTACCTGACGTACTACGGCG
CGATCGACCTCACCAAGATCCGCGACGACGCGCTGCGCCGCGCCACCGAG
CTGCAGGTAGACGCGCACAGCTGCGGTACGACTTGATGCTCAATACGTGC
AGGCTGACCTTGAGAGCTTAGATCTGACATGTAGGCTCGCGAACAAGTCA
GCCGCGCGTCGAGCGCTCTGGTTGGCTGCCAAAATTGCGAAGGCGAAAAA
CCATGATCAACAGGCAAAGAGAGAATGCGAAGTACCACAAGTTGTTGTGC
GCAAGGGGAGGCAGGTGAGAGTGCCATTTGCGGAACTTACTTACGGTGAG
CAACGCAATGTTCTTTTCCGCTTGCTCCTGACTGAGTCTGTACGAGAAGC
CAAGCGCAAAGAGCTGTCTGAGAGCCGCATGGTCAGGGATGAGGCGCCGG
ACATGTTTGCCATGCGCTTTATGTCCTTGTGGGACCAGTGCCGCGCGCTG
AATGACCCTTCTGCTGAGCGCTGCCCACTTGTGCATGACACTTTCGCATG
CTGGTGCCATCACCGCTGCATGCAACACACTCACAACAGCGATGCCAACA
TGCCGCCGCTGACGCGCCGCCGCCGCTGCCGCTGCTGCTGCCGCTGCTGC
TGCCGCTGCTGCACCTTAGATTGCGCACTTTGGCCAGTGCCCGATGCAGC
TCTTCTCGCGCCCGCACCCGCCGCGCGGCCGCCGCGTCCTCGTGCCGCGC
CCGCTCGCGACAACGACGCAGGGGCTGGACCTGTGGCGCCAGGTGCGCTG
TGCTGTGGGTCGTGCGATGCACAGTTGA
back to top

Coding sequence (CDS) from alignment at Contig_129:144001..147028-

>mRNA_9833 ID=mRNA_9833|Name=jgi.p|Trimin1|175741|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1170bp|location=Sequence derived from alignment at Contig_129:144001..147028- (Tribonema minus UTEX_B_3156 )
CGCACCTGCCGCAGGCCGCTGGCCCACGTGTGCGCGGTGTACACGCGGCG
CTACCGCCTCGTGGACAGCGCGATGGAGGTCTTCCTGCGCCGCGGCACCA
AGCGCGGACTGTTCCTGGACTTTGGCGTCACCAAGGGCGACGTCGACCGC
AGGAATGAGTTCGTCAGGATGCTCGTGCGGTTCTGCCCGCGCGGCACCCT
CAAGCACTGGCCCACGGAGGCGCGCCGCCTGCAGCGTCTCTGGCAGGGGC
GCCGCATCTCCAACTTCGACTACCTCATGGGCCTCAACGCGCTCGCGGGC
CGCAGCTACAGCGACCTGTGCCAGTACCCCGTCTTCCCCTGGGTGCTCTC
GTGCTACGGCGCGCCGGCGCTCGACCTGGGCGACCCCGCGTGCTACCGCG
ACCTGAGCCGCCCCATCGGCGCGCTGGACGACGCGCGCCTCGCCGAGTTC
CTCGAGCGCTACGAGTCATTCCAGGACCCCGACATCCCCGCCTTCATGTA
CGGCAGCCACTACAGCACGGCTGTGGGCGTCGTCCTCCACTTCCTCCTGC
GCCTGCAGCCGTTCGCGGACCTCCACCAGAGCATGCAGAACGGCGCGTTC
GACGTGCCGGACCGCCTCTTCTCGAGCGTCCCGCGCGCGTGGGCGCTGTG
CACGAGCGCGCTCTCCGAGGTCAAGGAGCTCACGCCGGAGTGGTACTGCG
TGCCGGACTTCCTGCGCAACGTCAACGGCTTTGAGCTCGGCGCGACGCAG
GACGGCGAGCGCGTGGACGACGTCGCGCTGCCGCGCTGGGCCGCGTCGCC
GGAGGACTTCATCCGGAAGCACAGGGCGGCGCTCGAGAGCGAGCACGTGA
GCGAGAACCTCCACCACTGGATCGACCTCATCTTCGGGCACAAGCAGCAG
GGGCAGGCGGCGGTTGACGCGCACAACGTCTTCTACTACCTGACGTACTA
CGGCGCGATCGACCTCACCAAGATCCGCGACGACGCGCTGCGCCGCGCCA
CCGAGCTGCAGATTGCGCACTTTGGCCAGTGCCCGATGCAGCTCTTCTCG
CGCCCGCACCCGCCGCGCGGCCGCCGCGTCCTCGTGCCGCGCCCGCTCGC
GACAACGACGCAGGGGCTGGACCTGTGGCGCCAGGTGCGCTGTGCTGTGG
GTCGTGCGATGCACAGTTGA
back to top