mRNA_9808 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|129576
Unique NamemRNA_9808
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|129576 vs. uniprot
Match: A0A836C7X0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7X0_9STRA)

HSP 1 Score: 181 bits (458), Expect = 6.800e-58
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 1 
Query:    1 MHLRPFHLARVYLEEKCGAQVVGGIVSPAHPTLVRQRHRTRPAAIIPPKHRLAMARCAVGDFGWLVVDPWEITRRRMMDYLSVLH 255
            MHLRPFHLARVYLEEKCGAQVVGGIVSPAHPTLVRQRHRTRPAAIIPPKHRLAMARCAVGDFGWLVVDPWEITRRRMMDYLSVLH
Sbjct:    1 MHLRPFHLARVYLEEKCGAQVVGGIVSPAHPTLVRQRHRTRPAAIIPPKHRLAMARCAVGDFGWLVVDPWEITRRRMMDYLSVLH 85
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BLAST of jgi.p|Trimin1|129576 vs. uniprot
Match: D7FJ02_ECTSI (CTP_transf_like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ02_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 4.340e-32
Identity = 59/84 (70.24%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:    1 MHLRPFHLARVYLEEKCGAQVVGGIVSPAHPTLVRQRHRTRPAAIIPPKHRLAMARCAVGDFGWLVVDPWEITRRRMMDYLSVL 252
            +H+R F+LAR YLE + G +VVGGIVSP+HPTLVRQRHR R A IIPPKHRL+MAR AVG   WL VD WE+TR+R+MDY+SVL
Sbjct:  343 IHIRRFYLARNYLEMQKGMRVVGGIVSPSHPTLVRQRHRVRAAEIIPPKHRLSMARAAVGKGSWLAVDSWEVTRKRIMDYMSVL 426
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BLAST of jgi.p|Trimin1|129576 vs. uniprot
Match: A0A7S2B1H5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B1H5_9STRA)

HSP 1 Score: 123 bits (308), Expect = 7.840e-31
Identity = 60/84 (71.43%), Postives = 68/84 (80.95%), Query Frame = 1 
Query:    1 MHLRPFHLARVYLEEKCGAQVVGGIVSPAHPTLVRQRHRTRPAAIIPPKHRLAMARCAVGDFGWLVVDPWEITRRRMMDYLSVL 252
            MHLR F++AR YLEE    +V+GG+VSPAH T VR ++R RP  IIPPKHRLAMAR AVGD  WL VDPWEITRRR+MDYLSVL
Sbjct:  444 MHLRNFYIARKYLEEHTTYEVLGGLVSPAHATEVRSKYRQRPREIIPPKHRLAMARKAVGDSTWLTVDPWEITRRRVMDYLSVL 527
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BLAST of jgi.p|Trimin1|129576 vs. uniprot
Match: A0A7S2FB54_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FB54_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.590e-29
Identity = 54/84 (64.29%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    1 MHLRPFHLARVYLEEKCGAQVVGGIVSPAHPTLVRQRHRTRPAAIIPPKHRLAMARCAVGDFGWLVVDPWEITRRRMMDYLSVL 252
            +HLR F++AR + EE     V+GG+VSP H T+VR R+R +P  IIPPKHRLAMAR  VGD  WL VDPWEITRRR MDYLS L
Sbjct:   45 VHLRLFYIARKFFEEHTDYAVLGGLVSPQHSTVVRGRYRFQPREIIPPKHRLAMARAIVGDSTWLTVDPWEITRRRGMDYLSTL 128
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BLAST of jgi.p|Trimin1|129576 vs. uniprot
Match: A0A6U0UYK4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0UYK4_9STRA)

HSP 1 Score: 113 bits (282), Expect = 7.580e-28
Identity = 54/85 (63.53%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:    1 MHLRPFHLARVYLEEKCGAQVVGGIVSPAHPTLVRQRHRTRPAAIIPPKHRLAMARCAVGDFGWLVVDPWEITRRRMMDYLSVLH 255
            +HLR  +LAR +LE++ G +V+GGI+SP+H TLVRQ+ R     IIPP+HRL MAR  VGD  WL VD WEITRRR+MDYLSVLH
Sbjct:  172 LHLRMLYLAREFLEQRAGLRVLGGIISPSHATLVRQQQRRTVKEIIPPRHRLNMARLLVGDSLWLSVDAWEITRRRIMDYLSVLH 256
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BLAST of jgi.p|Trimin1|129576 vs. uniprot
Match: F0YJI2_AURAN (BRCT domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJI2_AURAN)

HSP 1 Score: 111 bits (277), Expect = 1.300e-26
Identity = 55/84 (65.48%), Postives = 63/84 (75.00%), Query Frame = 1 
Query:    1 MHLRPFHLARVYLEEKCGAQVVGGIVSPAHPTLVRQRHRTRPAAIIPPKHRLAMARCAVGDFGWLVVDPWEITRRRMMDYLSVL 252
            MHLR F +AR YLEE+    V+GG++ P H T VRQR RTRP  IIPP+HRLAMAR AVG   WL VD WEITRRR++DYLS L
Sbjct:  617 MHLRHFVIARQYLEERTRFSVLGGLLIPKHATEVRQRCRTRPREIIPPRHRLAMARAAVGGSPWLTVDSWEITRRRILDYLSTL 700
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BLAST of jgi.p|Trimin1|129576 vs. uniprot
Match: A0A7S1XLJ5_9STRA (Hypothetical protein n=13 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLJ5_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.960e-25
Identity = 54/85 (63.53%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:    1 MHLRPFHLARVYLEEKCGAQVVGGIVSPAHPTLVRQRHRTRPAAIIPPKHRLAMARCAVGDFGWLVVDPWEITRRRMMDYLSVLH 255
            MHLR  +LAR +LE + G +VVGGI+SP+H TLVRQ+ R     IIP +HRL MAR  VG   WL VD WEITRRR+MDYLSVLH
Sbjct:  502 MHLRMLYLARQFLE-RAGMEVVGGIISPSHATLVRQKQRRNVKQIIPQRHRLNMARLMVGGSQWLTVDAWEITRRRIMDYLSVLH 585
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BLAST of jgi.p|Trimin1|129576 vs. uniprot
Match: A0A8J2WKN9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WKN9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.260e-24
Identity = 52/84 (61.90%), Postives = 61/84 (72.62%), Query Frame = 1 
Query:    1 MHLRPFHLARVYLEEKCGAQVVGGIVSPAHPTLVRQRHRTRPAAIIPPKHRLAMARCAVGDFGWLVVDPWEITRRRMMDYLSVL 252
            MHLR F +AR +LEE+    V+GG++ P H T VRQR RTRP  II P+HRLAM R AVG   WL VD WEITRRR++DYLS L
Sbjct:  214 MHLRHFVIARQFLEERTRFSVLGGLLVPKHATDVRQRCRTRPQEIITPRHRLAMVRAAVGGSPWLTVDSWEITRRRVLDYLSTL 297
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BLAST of jgi.p|Trimin1|129576 vs. uniprot
Match: A0A024TUB6_9STRA (CTP_transf_like domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TUB6_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 4.920e-20
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:    1 MHLRPFHLARVYLEEKCGAQVVGGIVSPAHPTLVRQRHRTRPAAIIPPKHRLAMARCAVGDFGWLVVDPWEITRRRMMDYLSVL 252
            +H+R F++AR ++E      VVGGI+SP H T VR ++R +P  +IP  HRLAM   A     W+ VD WEITRRR++DYLS L
Sbjct:  279 LHIRAFYVARQHIESNYSFPVVGGIISPCHDTYVRTKNRRKPREMIPKAHRLAMLEAATASSTWIEVDKWEITRRRVLDYLSTL 362
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BLAST of jgi.p|Trimin1|129576 vs. uniprot
Match: A0A6G0XKE5_9STRA (CTP_transf_like domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XKE5_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 9.220e-20
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:    1 MHLRPFHLARVYLEEKCGAQVVGGIVSPAHPTLVRQRHRTRPAAIIPPKHRLAMARCAVGDFGWLVVDPWEITRRRMMDYLSVL 252
            +H+R F++AR ++E      VVGGI+SP H T VR ++R +P  +IP  HRLAM   A     W+ VD WEITRRR++DYLS L
Sbjct:  283 LHIRAFYVARQHIEANYKFAVVGGIISPCHDTYVRTKNRRKPREMIPNAHRLAMLEAATASSSWIEVDKWEITRRRVLDYLSTL 366
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129576 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C7X0_9STRA6.800e-58100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7FJ02_ECTSI4.340e-3270.24CTP_transf_like domain-containing protein n=2 Tax=... [more]
A0A7S2B1H5_9STRA7.840e-3171.43Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2FB54_9STRA1.590e-2964.29Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A6U0UYK4_9STRA7.580e-2863.53Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
F0YJI2_AURAN1.300e-2665.48BRCT domain-containing protein n=1 Tax=Aureococcus... [more]
A0A7S1XLJ5_9STRA3.960e-2563.53Hypothetical protein n=13 Tax=Phaeomonas parva Tax... [more]
A0A8J2WKN9_9STRA1.260e-2461.90Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A024TUB6_9STRA4.920e-2050.00CTP_transf_like domain-containing protein n=1 Tax=... [more]
A0A6G0XKE5_9STRA9.220e-2050.00CTP_transf_like domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_81contigContig_81:622785..624844 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|129576|gw1.81.5.1
BiGG ReactioniMM904.YGR010W,iND750.YGR010W
BRITEko00000,ko00001,ko00002,ko01000
KEGG rclassRC00002
KEGG ReactionR00137,R03005
KEGG ModuleM00115
KEGG Pathwayko00760,ko01100,map00760,map01100
KEGG koko:K06210
EC2.7.7.1,2.7.7.18
GOsGO:0000139,GO:0000309,GO:0003674,GO:0003824,GO:0004515,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005768,GO:0005770,GO:0005794,GO:0005802,GO:0006082,GO:0006139,GO:0006163,GO:0006520,GO:0006531,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009058,GO:0009066,GO:0009108,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009165,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009435,GO:0009611,GO:0009987,GO:0012505,GO:0016020,GO:0016604,GO:0016740,GO:0016772,GO:0016779,GO:0017144,GO:0018130,GO:0019355,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0019693,GO:0019752,GO:0031090,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0034627,GO:0034628,GO:0034641,GO:0034654,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044431,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045202,GO:0046034,GO:0046483,GO:0046496,GO:0050896,GO:0051186,GO:0051188,GO:0055086,GO:0070013,GO:0070566,GO:0071704,GO:0072521,GO:0072524,GO:0072525,GO:0090407,GO:0097708,GO:0098588,GO:0098791,GO:1901135,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1990966
Preferred nameNMNAT2
Descriptionnicotinate-nucleotide adenylyltransferase activity
COG categoryH
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1057@1|root,KOG3199@2759|Eukaryota
Evalue7.12e-33
Seed ortholog2880.D7FJ02
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCytidyltransferase-like domain
Ec32 orthologEc-07_004950.1
TranscriptId129898
TrackFilteredModels1
ProteinId129576
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129576gene_9808Tribonema minus UTEX_B_3156 geneContig_81 622785..624844 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9808_1exon_9808_1Tribonema minus UTEX_B_3156 exonContig_81 622785..622831 +
exon_9808_2exon_9808_2Tribonema minus UTEX_B_3156 exonContig_81 624637..624844 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9808CDS_9808Tribonema minus UTEX_B_3156 CDSContig_81 622785..622831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129576Trimin1|129576|gw1.81.5.1Tribonema minus UTEX_B_3156 polypeptideContig_81 622785..624844 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9808 ID=mRNA_9808|Name=jgi.p|Trimin1|129576|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=255bp|location=Sequence derived from alignment at Contig_81:622785..624844+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCTGCGACCGTTTCACCTGGCACGAGTCTATCTGGAAGAGAAGTG
CGGCGCCCAAGTCGTCGGCGGCATCGTGAGCCCCGCGCACCCTACGCTGG
TCCGCCAGAGGCACCGCACGCGCCCCGCCGCCATCATACCGCCCAAGCAC
CGCCTGGCCATGGCGCGCTGCGCGGTGGGCGACTTTGGCTGGCTGGTGGT
GGATCCATGGGAGATCACGCGGCGGCGCATGATGGACTACCTGAGCGTGC
TGCAC
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protein sequence of jgi.p|Trimin1|129576

>Trimin1|129576|gw1.81.5.1 ID=Trimin1|129576|gw1.81.5.1|Name=jgi.p|Trimin1|129576|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=85bp
MHLRPFHLARVYLEEKCGAQVVGGIVSPAHPTLVRQRHRTRPAAIIPPKH
RLAMARCAVGDFGWLVVDPWEITRRRMMDYLSVLH
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mRNA from alignment at Contig_81:622785..624844+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9808 ID=mRNA_9808|Name=jgi.p|Trimin1|129576|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2060bp|location=Sequence derived from alignment at Contig_81:622785..624844+ (Tribonema minus UTEX_B_3156 )
ATGCACCTGCGACCGTTTCACCTGGCACGAGTCTATCTGGAAGAGAAGTG
AGACCCAATGAAAACGTCAACATTGGAAGCATTTGGTTTCGCAACGCATC
CATCTACCACATACGGACATTTTTGCCTTCACTTGAAATCGCTACGAAGA
CGTGGTGCATTGATTGTCGCTGTCGCTCAGGCGTTCGAGTTGACGCAGCG
TTTGGCCATTCGTTGCATTGTGCTTGAGTTGTCGGCAACAGCTGCTGCAG
ATTCAACCTAAATGCCATGGCTTCAATGTGCCTCATCTGAATCCAAGTAA
AACCAGCTGTGCAGGTAACCAAGATCAGAAACTGAAGCCTTGTACTTCTG
CAACGGATCACATCAGCAGCCTTCAGTCACATCTACATGTGCCGTACTCC
AGCTCCAGAGATGCCACGTATACTTCAACTTGAAGTATATATATATATTC
GTAATTCTTGCAGTACATCGTTTAGACAAAATCCAGTACAACTAGGTTTG
GCGTGAAGTCAGCGTGAAGAACAGTCTCACCAACCATAATGGGGCCGCTG
AATTTCACAATGTCCTTTGGGAGCCGAGGAACATCAGGTTGGTGAAAAAA
ACAATGCACTAGCACTCTCAGCCAACCAGATGGCATAGTTGAACTTACTG
CGCCTGCATGGCCCCACGGTCGGAGGGCACTTGGTTGCGTTGCTGTCACG
GCTGCTGTTGTGCTTGATGGGGATGCTGTTGGTGCCTGCCGCGAAATCTT
GGCTTGTGGTACATCCGCAGCTCTGACCTGTTCACAGTCATCGCATAACC
GCGATGTCTGCGTGGAATGCTTGCTTGTGATGCACATCTGATTCAGAAAC
CCAGGCCAGCAAAAGCAGTGTACGGAGTGGCTCTCAGTTCATAAAAACCA
TTAATGATTCTCAGCGTTTTCAGGATCAATCAGTGCCCACAGACATCTCC
GGAGTCTCGCGTATCGTGATGCACCTGACAGTGCAAATGCATGAATGCTA
CATACCAGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCAAGCACAATGC
GTTGCTCCTCGAGCTCCCGCATTTTCAAAACGCTCTCGACTTCCTCGCGA
TTGCTGTTGTGCTGACTGCACATGTAGTGCCTGCATGATACGACTCACCC
CCCCCCCCGCCCCGCGCCTCCCCCAGTACACTGCGTCTTCAACGCATGCG
CGGTGAGCACTGCTGACGTCTTCACACATACCTACTGTCGCATTCTTCAG
GTGCGGCGCTCAAGTCATTGGGGACATCGTCAGCCCCGCGCACCAGACCC
CTCATCACTGCATACGTGTTTAACACTCTGACCTCCTTATACATACCTAC
TGTTGCATTCCTCATGTGCGGCGCCCAAGTCGTCGGAGGCATTGTCAGCC
CTGCGCACCCGACCTACCCTTACCCTAACTTAAACATTGGCGCCATTGGA
AGCATTTGGTTCCGCGGTGCAACCACCTACTCTACCCCACACACGGACAT
TTGGCCTTCACTTGACCAGACGGTCTCATGCCGGCGGTGCCGCCCGCAGT
CGCAATGCCTTGCCGCGGCAGCAGCGGGGGGCGAGCCTGAAGCCGACCCA
CTTCACGGCTGAAGCGACGCGCCACGCACGCACACTGGTGTCGATGAGCG
CCTGCGGTCATAACGCCTACTTCGCACTTGAAGTTGACTCACCACACGTG
CATGCCGTTGCATCCTCCAGGTGCGGCGCCCAAGTCGTCGGCGGCATTGT
CAGCCCCGCGCACCCGACGCTGGTCACTGCAATGGGCTTACCTTTTAAGT
TAACACACTCCTGACCTCCTCATACATGCATACCTACTGTTGCAATTTTC
AGGTGCGGCGCCCAAGTCGTCGGCGGCATCGTGAGCCCCGCGCACCCTAC
GCTGGTCCGCCAGAGGCACCGCACGCGCCCCGCCGCCATCATACCGCCCA
AGCACCGCCTGGCCATGGCGCGCTGCGCGGTGGGCGACTTTGGCTGGCTG
GTGGTGGATCCATGGGAGATCACGCGGCGGCGCATGATGGACTACCTGAG
CGTGCTGCAC
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Coding sequence (CDS) from alignment at Contig_81:622785..624844+

>mRNA_9808 ID=mRNA_9808|Name=jgi.p|Trimin1|129576|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=255bp|location=Sequence derived from alignment at Contig_81:622785..624844+ (Tribonema minus UTEX_B_3156 )
ATGCACCTGCGACCGTTTCACCTGGCACGAGTCTATCTGGAAGAGAAGTG
CGGCGCCCAAGTCGTCGGCGGCATCGTGAGCCCCGCGCACCCTACGCTGG
TCCGCCAGAGGCACCGCACGCGCCCCGCCGCCATCATACCGCCCAAGCAC
CGCCTGGCCATGGCGCGCTGCGCGGTGGGCGACTTTGGCTGGCTGGTGGT
GGATCCATGGGAGATCACGCGGCGGCGCATGATGGACTACCTGAGCGTGC
TGCAC
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