|
Homology
BLAST of jgi.p|Trimin1|336116 vs. uniprot
Match: A0A835YJ79_9STRA (PNPLA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ79_9STRA) HSP 1 Score: 994 bits (2569), Expect = 0.000e+0 Identity = 560/560 (100.00%), Postives = 560/560 (100.00%), Query Frame = 1
Query: 1 MGLPRGAQTGAGCLGAALACLLVPXXXXXXXXAVLFRRAWRRAQAIALYLLFYVATWAFAGARVMLLPVRKLVTKLWDSRWRHRKRIDTSEWKGGEQGPLPLAQMVTLMDALNAWARRKGPGCSAEAGAPLCFSFSGCSWLMWYHLGVARAIQTNVLRAQDAVTLVQELQAPPPDAPRQRAQTTPLTDGDSAQQQGERARGQXXXXXXXXXXXXXXXXXXEMVTPVKRKNSLLNMLQMVATPSREAGGGGGVSIGAVMNDIAMATVSSDRREGLTSLIQSLTAAAGRARHSLSAAGSSGGAASRSVDVVFAGSSCGALVACALAADVDVAKLIALAQTLTDFAARRFAGPAGAMTRIVEKQLLSSAAPLPRRTPQGIRELLPRGSYRRLTGRLRVSITLLTPAPRNVTVDRFDSDDDVIRALLCSCYIPLYYETPQTWAGRVAVDGGFTDNLPRGGGAAPTVTVSPYKIERAVIGPPSERPPYPPWMSLVPGSLDECKVLHDDGFADLMSWLRALPQPVAPXXXXXXXXXXSVSSAAAPLQRSNSGQFSLTPQASGHFQL 1680
MGLPRGAQTGAGCLGAALACLLVPXXXXXXXXAVLFRRAWRRAQAIALYLLFYVATWAFAGARVMLLPVRKLVTKLWDSRWRHRKRIDTSEWKGGEQGPLPLAQMVTLMDALNAWARRKGPGCSAEAGAPLCFSFSGCSWLMWYHLGVARAIQTNVLRAQDAVTLVQELQAPPPDAPRQRAQTTPLTDGDSAQQQGERARGQXXXXXXXXXXXXXXXXXXEMVTPVKRKNSLLNMLQMVATPSREAGGGGGVSIGAVMNDIAMATVSSDRREGLTSLIQSLTAAAGRARHSLSAAGSSGGAASRSVDVVFAGSSCGALVACALAADVDVAKLIALAQTLTDFAARRFAGPAGAMTRIVEKQLLSSAAPLPRRTPQGIRELLPRGSYRRLTGRLRVSITLLTPAPRNVTVDRFDSDDDVIRALLCSCYIPLYYETPQTWAGRVAVDGGFTDNLPRGGGAAPTVTVSPYKIERAVIGPPSERPPYPPWMSLVPGSLDECKVLHDDGFADLMSWLRALPQPVAPXXXXXXXXXXSVSSAAAPLQRSNSGQFSLTPQASGHFQL
Sbjct: 1 MGLPRGAQTGAGCLGAALACLLVPXXXXXXXXAVLFRRAWRRAQAIALYLLFYVATWAFAGARVMLLPVRKLVTKLWDSRWRHRKRIDTSEWKGGEQGPLPLAQMVTLMDALNAWARRKGPGCSAEAGAPLCFSFSGCSWLMWYHLGVARAIQTNVLRAQDAVTLVQELQAPPPDAPRQRAQTTPLTDGDSAQQQGERARGQXXXXXXXXXXXXXXXXXXEMVTPVKRKNSLLNMLQMVATPSREAGGGGGVSIGAVMNDIAMATVSSDRREGLTSLIQSLTAAAGRARHSLSAAGSSGGAASRSVDVVFAGSSCGALVACALAADVDVAKLIALAQTLTDFAARRFAGPAGAMTRIVEKQLLSSAAPLPRRTPQGIRELLPRGSYRRLTGRLRVSITLLTPAPRNVTVDRFDSDDDVIRALLCSCYIPLYYETPQTWAGRVAVDGGFTDNLPRGGGAAPTVTVSPYKIERAVIGPPSERPPYPPWMSLVPGSLDECKVLHDDGFADLMSWLRALPQPVAPXXXXXXXXXXSVSSAAAPLQRSNSGQFSLTPQASGHFQL 560
BLAST of jgi.p|Trimin1|336116 vs. uniprot
Match: A0A7S2H7R9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H7R9_9STRA) HSP 1 Score: 108 bits (270), Expect = 3.950e-22 Identity = 81/206 (39.32%), Postives = 108/206 (52.43%), Query Frame = 1
Query: 928 FAGSSCGALVACALAADVDVAKLIALAQTLTDFAARRFAGPAGAMTRIVEKQLLSSAAPLPRRTPQGIRELLPRGSYRRLT-GRLRVSITLLTPA--PRNVTVDRFDSDDDVIRALLCSCYIPLYYETPQTWAGRVAVDGGFTDNLPRGGGAAPTVTVSPYKIERAVIGPPSERPPYPPWMSLVPGSLDECKVLHDDGFADLMSWL 1536
FAG+SCG+L+A LA V A L A ++ DF+A R+AGPAGAMT+IV +G+R LLP + R T GR VSI+ L PR V + +D+I ALL SCYIP+YYE G VDGG TD LP T+TVSP++ A I P PP+P ++ ++ + L G+ D W+
Sbjct: 135 FAGASCGSLIAALLACRVPPAALREFAFSMIDFSASRWAGPAGAMTKIVA---------------EGLRRLLPEDAVRGTTCGRCLVSISRLDQGLLPRAWYVSEYRDREDLISALLASCYIPVYYEQSCVHRGICCVDGGLTDPLPLLPEDRETITVSPFQ-RAATISPLLSSPPFPWRHAIYLSCREDGERLRVSGYNDCHRWV 324
BLAST of jgi.p|Trimin1|336116 vs. uniprot
Match: A0A8C9SM81_SCLFO (PNPLA domain-containing protein n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A8C9SM81_SCLFO) HSP 1 Score: 77.4 bits (189), Expect = 1.430e-12 Identity = 47/95 (49.47%), Postives = 62/95 (65.26%), Query Frame = 1
Query: 1129 IRELLPRGSYRRLTGRLRVSITLLTPAPRNVTVDRFDSDDDVIRALLCSCYIPLYYET-PQTWAGRVAVDGGFTDNLPRGGGAAPTVTVSPYKIE 1410
+R LLP+ ++ TGRL VS+T + P RNV V F S +DVI+ALLCSC++PLY P + G +DGGFTD LP G + T+TVSP+ E
Sbjct: 65 LRRLLPKNAHLLATGRLFVSMTRI-PDGRNVLVSEFHSREDVIQALLCSCFLPLYCGIQPPCYKGVYYIDGGFTDILPVPGSSR-TLTVSPFAGE 157
BLAST of jgi.p|Trimin1|336116 vs. uniprot
Match: A0A0C2FHR9_9BILA (Phospholipase, patatin family (Fragment) n=1 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2FHR9_9BILA) HSP 1 Score: 77.4 bits (189), Expect = 2.050e-12 Identity = 57/171 (33.33%), Postives = 90/171 (52.63%), Query Frame = 1
Query: 928 FAGSSCGALVACALAADVDVAKLIALAQTLTDFAARRFAG---PAGAMTRIVEKQLLSSAAPLPRRTPQGIRELLPRGSYRRLTGRLRVSITLLTPAPRNVTVDRFDSDDDVIRALLCSCYIPLYYE-TPQTWAGRVAVDGGFTDNLPRGGGAAPTVTVSPYKIERAVIGP 1428
+G+S GA+VA L ++ +++ + + A R G PA + +V ++ I LP +Y+R TGRL++S+T + +NV V F+S+ ++I A++CSC+IP+Y TP T+ G +DGGFTDN P TVTVSP+ E + P
Sbjct: 20 ISGASAGAIVAAGLVTNICISQATSTILKIVSQARSRALGALHPAFNLLGLVREE---------------IERTLPPDAYKRCTGRLQISLTRWSDN-KNVVVTEFESNKELIDAIICSCFIPVYCGITPPTYRGEAYIDGGFTDNQPSYDDH--TVTVSPFSGESDICPP 172
BLAST of jgi.p|Trimin1|336116 vs. uniprot
Match: A0A3P6RJZ3_CYLGO (PNPLA domain-containing protein n=1 Tax=Cylicostephanus goldi TaxID=71465 RepID=A0A3P6RJZ3_CYLGO) HSP 1 Score: 76.3 bits (186), Expect = 3.040e-12 Identity = 58/168 (34.52%), Postives = 89/168 (52.98%), Query Frame = 1
Query: 928 FAGSSCGALVACALAADVDVAKLIALAQTLTDFAARRFAGPAGAMTRIVEKQLLSSAAPLPRRTPQGIRELLPRGSYRRLTGRLRVSITLLTPAPRNVTVDRFDSDDDVIRALLCSCYIPLYYE-TPQTWAGRVAVDGGFTDNLPRGGGAAPTVTVSPYKIERAVIGP 1428
+G+S GA++A L DV V+++ + + A R GP E LL+ T I LP +++R T RL++S+T + +NV V ++DS+ +++ A++CSCYIP+Y P T+ G +DGGFTDN P TVTVSP+ E + P
Sbjct: 44 ISGASAGAVIAATLVTDVCVSQVTSTILKIVSQARSRALGPLHP-----EFDLLAL-------TRMEIERYLPPDAHKRCTDRLQISLTRWRDS-KNVVVTQYDSNKELVDAIICSCYIPIYCGINPPTYRGEAYIDGGFTDNQPVYDDH--TVTVSPFCGESDICPP 196
BLAST of jgi.p|Trimin1|336116 vs. uniprot
Match: A0A0D8XMR1_DICVI (Phospholipase, patatin family n=1 Tax=Dictyocaulus viviparus TaxID=29172 RepID=A0A0D8XMR1_DICVI) HSP 1 Score: 80.1 bits (196), Expect = 4.130e-12 Identity = 54/162 (33.33%), Postives = 88/162 (54.32%), Query Frame = 1
Query: 928 FAGSSCGALVACALAADVDVAKLIALAQTLTDFAARRFAGPAGAMTRIVEKQLLSSAAPLPRRTPQGIRELLPRGSYRRLTGRLRVSITLLTPAPRNVTVDRFDSDDDVIRALLCSCYIPLYY-ETPQTWAGRVAVDGGFTDNLPRGGGAAPTVTVSPYKIE 1410
+G+S GA+VA L +V ++K + + A R GP +++ + I LP GSY+R GRL++S+T + +N+ + F+SD+++I A++CSCYIP++ TP ++ G + +DGGFTDN P T+TVSP+ E
Sbjct: 44 ISGASAGAIVAACLVTNVCLSKATSTILKVVSQARSRSLGPLHPEFNLLDL------------VREEISHQLPPGSYKRCNGRLQISLTRWKDS-KNIVISDFNSDEELIDAIICSCYIPVFCGNTPPSFRGEMYIDGGFTDNQPSFDDH--TITVSPFSGE 190
BLAST of jgi.p|Trimin1|336116 vs. uniprot
Match: W2SZZ0_NECAM (Phospholipase, patatin family n=1 Tax=Necator americanus TaxID=51031 RepID=W2SZZ0_NECAM) HSP 1 Score: 80.1 bits (196), Expect = 4.630e-12 Identity = 58/168 (34.52%), Postives = 89/168 (52.98%), Query Frame = 1
Query: 928 FAGSSCGALVACALAADVDVAKLIALAQTLTDFAARRFAGPAGAMTRIVEKQLLSSAAPLPRRTPQGIRELLPRGSYRRLTGRLRVSITLLTPAPRNVTVDRFDSDDDVIRALLCSCYIPLYYE-TPQTWAGRVAVDGGFTDNLPRGGGAAPTVTVSPYKIERAVIGP 1428
+G+S GA+VA L +V +++ + + A R GP L A L + I +LP SY++ +GRL++S+T +NV V F+S++++I A++CSC+IP+Y TP T+ G +DGGFTDN P TVTVSP+ E + P
Sbjct: 44 ISGASAGAIVAAGLVTNVCISQATSTILKIVTQARSRALGP------------LHPAFNLLGLVREEIEHILPPNSYKKCSGRLQISLTRWRDN-KNVVVTEFESNEELIDAIICSCFIPIYCGVTPPTYRGEAYIDGGFTDNQPSYDDH--TVTVSPFSGESDICPP 196
BLAST of jgi.p|Trimin1|336116 vs. uniprot
Match: A0A016V357_9BILA (PNPLA domain-containing protein n=4 Tax=Ancylostoma TaxID=29169 RepID=A0A016V357_9BILA) HSP 1 Score: 78.6 bits (192), Expect = 1.300e-11 Identity = 58/171 (33.92%), Postives = 91/171 (53.22%), Query Frame = 1
Query: 928 FAGSSCGALVACALAADVDVAKLIALAQTLTDFAARRFAG---PAGAMTRIVEKQLLSSAAPLPRRTPQGIRELLPRGSYRRLTGRLRVSITLLTPAPRNVTVDRFDSDDDVIRALLCSCYIPLYYE-TPQTWAGRVAVDGGFTDNLPRGGGAAPTVTVSPYKIERAVIGP 1428
+G+S GA+VA L +V +++ + + A R G PA + +V ++ I LP +Y+R TGRL++S+T + +NV V F+S++++I A++CSC+IP+Y TP T+ G +DGGFTDN P TVTVSP+ E + P
Sbjct: 44 ISGASAGAIVAAGLVTNVCISQATSTILKIVTQARSRALGALHPAFNLLGLVREE---------------IERTLPPDAYKRCTGRLQISLTRWSDN-KNVVVTEFESNEELIDAIICSCFIPVYCGITPPTYRGEAYIDGGFTDNQPSYDDH--TVTVSPFSGESDICPP 196
BLAST of jgi.p|Trimin1|336116 vs. uniprot
Match: A0A0C2C6R9_9BILA (Phospholipase, patatin family (Fragment) n=1 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2C6R9_9BILA) HSP 1 Score: 77.4 bits (189), Expect = 2.130e-11 Identity = 57/171 (33.33%), Postives = 90/171 (52.63%), Query Frame = 1
Query: 928 FAGSSCGALVACALAADVDVAKLIALAQTLTDFAARRFAG---PAGAMTRIVEKQLLSSAAPLPRRTPQGIRELLPRGSYRRLTGRLRVSITLLTPAPRNVTVDRFDSDDDVIRALLCSCYIPLYYE-TPQTWAGRVAVDGGFTDNLPRGGGAAPTVTVSPYKIERAVIGP 1428
+G+S GA+VA L ++ +++ + + A R G PA + +V ++ I LP +Y+R TGRL++S+T + +NV V F+S+ ++I A++CSC+IP+Y TP T+ G +DGGFTDN P TVTVSP+ E + P
Sbjct: 20 ISGASAGAIVAAGLVTNICISQATSTILKIVSQARSRALGALHPAFNLLGLVREE---------------IERTLPPDAYKRCTGRLQISLTRWSDN-KNVVVTEFESNKELIDAIICSCFIPVYCGITPPTYRGEAYIDGGFTDNQPSYDDH--TVTVSPFSGESDICPP 172
BLAST of jgi.p|Trimin1|336116 vs. uniprot
Match: UPI000878910F (patatin-like phospholipase domain-containing protein 2 n=1 Tax=Scleropages formosus TaxID=113540 RepID=UPI000878910F) HSP 1 Score: 77.4 bits (189), Expect = 2.270e-11 Identity = 47/95 (49.47%), Postives = 62/95 (65.26%), Query Frame = 1
Query: 1129 IRELLPRGSYRRLTGRLRVSITLLTPAPRNVTVDRFDSDDDVIRALLCSCYIPLYYET-PQTWAGRVAVDGGFTDNLPRGGGAAPTVTVSPYKIE 1410
+R LLP+ ++ TGRL VS+T + P RNV V F S +DVI+ALLCSC++PLY P + G +DGGFTD LP G + T+TVSP+ E
Sbjct: 103 LRRLLPKNAHLLATGRLFVSMTRI-PDGRNVLVSEFHSREDVIQALLCSCFLPLYCGIQPPCYKGVYYIDGGFTDILPVPGSSR-TLTVSPFAGE 195
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
ProteomeId | Trimin1|336116|MIX44879_11_32 |
BRITE | ko00000,ko00001,ko00002,ko01000,ko03036 |
KEGG rclass | RC00020,RC00037,RC00041,RC00094 |
KEGG Reaction | R02250,R02687 |
KEGG Module | M00098 |
KEGG Pathway | ko00561,ko01100,ko04714,ko04923,map00561,map01100,map04714,map04923 |
KEGG ko | ko:K13534,ko:K16765,ko:K16814,ko:K16816 |
EC | 3.1.1.3 |
GOs | GO:0000062,GO:0000166,GO:0001676,GO:0002021,GO:0003674,GO:0003824,GO:0003841,GO:0004465,GO:0004620,GO:0004623,GO:0004806,GO:0005488,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005788,GO:0005789,GO:0005811,GO:0005829,GO:0005886,GO:0006082,GO:0006464,GO:0006629,GO:0006631,GO:0006638,GO:0006639,GO:0006641,GO:0006644,GO:0006650,GO:0006654,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008289,GO:0008374,GO:0008610,GO:0008654,GO:0009056,GO:0009058,GO:0009605,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0009991,GO:0010876,GO:0010883,GO:0010888,GO:0010889,GO:0010891,GO:0010896,GO:0010898,GO:0012505,GO:0016020,GO:0016042,GO:0016043,GO:0016298,GO:0016411,GO:0016740,GO:0016746,GO:0016747,GO:0016787,GO:0016788,GO:0017076,GO:0019216,GO:0019222,GO:0019432,GO:0019433,GO:0019538,GO:0019637,GO:0019752,GO:0019915,GO:0030554,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031667,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0032879,GO:0033036,GO:0033218,GO:0034389,GO:0035727,GO:0036042,GO:0036094,GO:0036153,GO:0036155,GO:0036211,GO:0042171,GO:0042175,GO:0042592,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043436,GO:0043687,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0045834,GO:0046460,GO:0046461,GO:0046463,GO:0046464,GO:0046473,GO:0046474,GO:0046486,GO:0046503,GO:0048037,GO:0048518,GO:0048519,GO:0048522,GO:0048878,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0050994,GO:0050996,GO:0051179,GO:0051235,GO:0051264,GO:0051265,GO:0052689,GO:0055088,GO:0065007,GO:0065008,GO:0070013,GO:0071617,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090207,GO:0090208,GO:0090407,GO:0097159,GO:0097367,GO:0098827,GO:1901265,GO:1901363,GO:1901564,GO:1901567,GO:1901575,GO:1901576,GO:1901681,GO:1905952,GO:1905953 |
Preferred name | PNPLA2 |
Description | It is involved in the biological process described with lipid metabolic process |
COG category | I |
Max annot lvl | 33208|Metazoa |
EggNOG OGs | KOG3773@1|root,KOG3773@2759|Eukaryota,38FTD@33154|Opisthokonta,3B9RT@33208|Metazoa,3CVPP@33213|Bilateria,41XTX@6656|Arthropoda,3SJCB@50557|Insecta,44WRB@7147|Diptera,45QT7@7214|Drosophilidae |
Evalue | 4.46e-12 |
Seed ortholog | 7260.FBpp0245402 |
Hectar predicted targeting category | signal peptide |
TranscriptId | 336438 |
Track | FilteredModels1 |
ProteinId | 336116 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9796 ID=mRNA_9796|Name=jgi.p|Trimin1|336116|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1683bp|location=Sequence derived from alignment at Contig_81:506529..513190- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGGGGCTGCCTCGTGGCGCCCAGACCGGCGCTGGTTGCCTGGGCGCAGC GCTAGCGTGCCTGTTGGTGCCACTCTTGGTCGCACTGGCACTGCATGCAG TGCTGTTCAGGCGCGCATGGCGGAGAGCACAGGCCATTGCCCTGTACCTG CTCTTCTACGTGGCCACGTGGGCATTTGCCGGCGCCAGGGTGATGTTGTT GCCAGTCAGGAAGCTGGTGACGAAGCTCTGGGACAGCAGATGGCGACATA GGAAGCGCATAGACACCAGCGAGTGGAAGGGGGGGGAGCAGGGGCCTCTG CCACTGGCGCAGATGGTGACTCTGATGGATGCCCTCAATGCGTGGGCCAG GCGGAAGGGGCCGGGCTGCAGCGCAGAGGCGGGGGCGCCGCTGTGCTTCA GCTTTTCCGGCTGTTCCTGGCTCATGTGGTACCACCTCGGCGTCGCGCGC GCGATCCAGACCAACGTCCTGCGCGCCCAAGATGCCGTAACGCTAGTGCA GGAGCTGCAGGCGCCGCCGCCCGACGCGCCGCGGCAGCGCGCGCAGACGA CGCCGCTGACTGACGGCGACAGCGCTCAGCAGCAGGGGGAGCGCGCCAGG GGGCAGACGGAAGGGGGGGGCGGGGGGGAGGGGGAGGGGGAGGGGGGGGG TGGGGGGGGGGAGATGGTGACGCCGGTGAAGCGCAAGAACTCGCTGCTGA ACATGCTGCAGATGGTGGCGACGCCGAGCAGGGAGGCGGGCGGCGGAGGA GGCGTCAGCATCGGCGCGGTAATGAACGACATTGCCATGGCCACCGTCTC CAGCGACCGTAGGGAGGGCCTCACCTCCCTCATCCAATCCCTCACCGCCG CCGCGGGCCGCGCGCGCCACTCCCTCTCCGCCGCCGGCAGCAGCGGCGGC GCAGCGTCGCGCAGCGTCGACGTGGTGTTTGCGGGCTCGAGCTGCGGCGC GCTGGTCGCGTGCGCGCTGGCGGCGGATGTGGACGTGGCGAAGTTGATTG CGCTCGCGCAGACGCTGACGGACTTCGCAGCGCGGCGCTTCGCGGGGCCC GCCGGCGCCATGACGCGCATCGTGGAGAAGCAATTGCTGAGCAGTGCTGC GCCGTTGCCACGCCGCACGCCGCAGGGCATCCGCGAGCTGCTGCCGCGCG GCTCCTACCGCCGCCTCACGGGGCGCCTGCGCGTCTCCATCACGCTCCTC ACGCCGGCGCCGCGCAACGTCACGGTGGACCGCTTCGACTCCGACGACGA CGTGATCCGCGCGCTGCTGTGCTCGTGCTACATACCCCTGTACTACGAGA CGCCGCAGACGTGGGCGGGGCGCGTGGCAGTTGACGGCGGTTTCACCGAC AACCTGCCGCGCGGGGGCGGCGCGGCGCCCACCGTCACCGTCTCGCCGTA CAAGATAGAGCGCGCGGTGATCGGACCCCCCTCCGAAAGGCCCCCCTACC CGCCCTGGATGAGCCTTGTGCCGGGCTCCCTCGATGAGTGCAAGGTGCTG CACGATGACGGTTTCGCGGACCTCATGAGCTGGCTGCGCGCGCTGCCGCA GCCGGTGGCACCGCCGCCGCCGTCGCGGCGCAGCAGCAGCGGGAGCGTCT CCTCCGCTGCGGCGCCGCTGCAGAGGTCAAATTCGGGGCAGTTCAGCCTG ACCCCGCAGGCGTCCGGTCACTTTCAGCTGTAG back to topprotein sequence of jgi.p|Trimin1|336116 >Trimin1|336116|MIX44879_11_32 ID=Trimin1|336116|MIX44879_11_32|Name=jgi.p|Trimin1|336116|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=561bp
MGLPRGAQTGAGCLGAALACLLVPLLVALALHAVLFRRAWRRAQAIALYL LFYVATWAFAGARVMLLPVRKLVTKLWDSRWRHRKRIDTSEWKGGEQGPL PLAQMVTLMDALNAWARRKGPGCSAEAGAPLCFSFSGCSWLMWYHLGVAR AIQTNVLRAQDAVTLVQELQAPPPDAPRQRAQTTPLTDGDSAQQQGERAR GQTEGGGGGEGEGEGGGGGGEMVTPVKRKNSLLNMLQMVATPSREAGGGG GVSIGAVMNDIAMATVSSDRREGLTSLIQSLTAAAGRARHSLSAAGSSGG AASRSVDVVFAGSSCGALVACALAADVDVAKLIALAQTLTDFAARRFAGP AGAMTRIVEKQLLSSAAPLPRRTPQGIRELLPRGSYRRLTGRLRVSITLL TPAPRNVTVDRFDSDDDVIRALLCSCYIPLYYETPQTWAGRVAVDGGFTD NLPRGGGAAPTVTVSPYKIERAVIGPPSERPPYPPWMSLVPGSLDECKVL HDDGFADLMSWLRALPQPVAPPPPSRRSSSGSVSSAAAPLQRSNSGQFSL TPQASGHFQL* back to topmRNA from alignment at Contig_81:506529..513190- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9796 ID=mRNA_9796|Name=jgi.p|Trimin1|336116|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6662bp|location=Sequence derived from alignment at Contig_81:506529..513190- (Tribonema minus UTEX_B_3156 ) ATGGGGCTGCCTCGTGGCGCCCAGACCGGCGCTGGTTGCCTGGGCGCAGC
GCTAGCGTGCCTGTTGGTGCCACTCTTGGTCGCACTGGCACTGCATGCAG
TGCTGTTCAGGCGCGCATGGCGGAGAGCACAGGCCATTGCCCTGTACCTG
CTCTTCTACGTGGCCACGTGGGCATTTGCCGGCGCCAGGGTGATGTTGTT
GCCAGTCAGGAAGCTGGTGACGAAGCTCTGGGACAGCAGATGGCGACATA
GGTAACTTTTGGGGGCTGCTTGTTGAACATAATTACACAGTCCCGCGAGC
GTCCTTTCATGAGCTCTGTTTAAGCAGCTGCATCGTCGCATGGTGCTAGT
CAAAAGTGGGGTCGTGTCCTTGCTGCCGCGGTGATATTACTCAAGCAAAG
TTCGCATCGCGTAAATCGCTGAGGCCCTCCGATGCTTGGAATCAGAGTGC
ATGCTCCACAAATCCATCACTGGCATGTGCTTGAATGGCAACAGCATACC
CCGCCGGGCGGCATCAACAAATAGTATTGCTCGTGCAATTCAACAATACA
TGCCACATCGTACTCCATCTGCCATGCATTGTCTTGCTCCCCGAGCTCTA
ATCCTGCCCTCCCATGTTTCCCACCTTGCAGGAAACGCACATGTAGACAC
AGTGACTCTGCCTCTGGCTCTCGCCTCTACATGCATGCGACTCTCACCCT
CCACCGCTGTCTGCCATCCTGCCAATGCAGGAAGCAAACAGTTCAAAACA
AGAGCAACTCTAAATCTGAGTCTGACTCTGACCATCTCGATGCGCATCTC
CCGCACACCAGCGAAGCGCACAGACACTAGCAAATCTGACTCTGACTCTG
ACTCTGGTTCTTACTCTGAATCTGACTCTCTCCCCACATCCCAGGAAGCG
CATAGACACCAGCGAGTGGAAGGGGGGGGAGCAGGGGCCTCTGCCACTGG
CGCAGATGGTGACTCTGATGGATGCCCTCAATGCGTGGGCCAGGCGGAAG
GGGCCGGGCTGCAGCGCAGAGGCGGGGGCGCCGCTGTGCTTCAGCTTTTC
CGGCTGTTCCTGGCTCATGTGAGGCAAACAGCAATTGCTCCCTTCACTTG
CAAATTGGAATCTGATGAGCTTTTCCGGCTGTTCCTGGCTCATGTGAGGC
AAAATAACATGCCGTAAACTGATATTTGATGAGCTGTTCCGGCTGCTCCT
GGCTCATGTGAGGCAAATACAGTGATCAACGTGGGTAGTGATCAAAATGG
GTGCTCCGAAGTAATTGCGATGCTTAATGCGATGCTTCTTGATAAGTGCC
AATGGCAGCATTCACCTCCAGTGAATATGTTTGCAGCTGCTCTTGGCTCT
TGGGGCGCCACTGTGCGTCAGCTTTTCCGGCTGCTGCTGGCTCACGTGAG
GCAAGTACAGTAATGAACACGGGTACTCCGAAGTAGAACGCTATGCTCCG
CAACAAGTGGCAATGGTGGCCTTGATCTCGATACATAGTCATCCATTCCT
TTGCCGGTGGTGCCACGTCGGCACCGCGCACAAGACGCCATCATTGTCGC
ATGCACTCGTGACGCTCACATGCATCCCAAAAACAGCTGATTCATTTACT
CAAAAGCTACCTCAGCCTACCTACAAGGCGCTTTCGATGTGACACTCACA
TACATCCCGAAAACAGCAATGCCGTGTGAAACTACTCAGAATGCATTTAC
AATTGGATTGCGGCTGCTGATGTGCAGGTGGTACTGCCTTGGCGCCGCGC
GCGATCCAGATGACGTCACACGACGCCTTCACTGTCGCGTGCACCTGTGA
CGCTCATATACATTGCGAAAACAGCAATGCCGTGTGAAACTACTCAGAAT
GCATTTACAATTTGGATTGCGGCTGCTGATGTGCAGGTGGTACTGCCTTG
GCGCCGCGCGCGATCCAGATGACGTCACACGACGCCTTCACTGTCGCGTG
CACCTGTGACGCTCACATACATTGCGAAAACAGCCGTGTCATGTGAAACT
ATGTCATGTTTTCATCGCCAAAATTAGAATGCATCTGCAATTGCGTTGCG
GCTACAGGTGGTACCGCCTCGGCGTCGCGCGCGCGATCCATACCACGTAA
CAGGATGCCATCATTGTCCATGCGCATGCACATATGACGCTCGCATACGT
CCAATTTCAATGATTTCCAAGTTGAACTACTTGATTGATATACTGCGGCT
ACTGATATGCAGGTGGTACCACCTCGGCGTCGCGCGCGCGATCCAGACCA
ACGTCCTGCGCGCCCAAGATGCCGTAACGCTAGTGCAGGAGCTGCAGGCG
CCGCCGCCCGACGCGCCGCGGCAGCGCGCGCAGACGACGCCGCTGACTGA
CGGCGACAGCGCTCAGCAGCAGGGGGAGCGCGCCAGGGGGCAGACGGAAG
GGGGGGGCGGGGGGGAGGGGGAGGGGGAGGGGGGGGGTGGGGGGGGGGAG
ATGGTGACGCCGGTGAAGCGCAAGAACTCGCTGCTGAACATGCTGCAGAT
GGTGGCGACGCCGAGCAGGGAGGCGGGCGGCGGAGGTATGTATGTATGTC
TGGGAAGTATGTGTACTGTGACCTGCATGTATACTTGTCTTACAGGCGGT
CAAGTACGGTACTGCACAAAACATAAACTTCAGAATAAATGTTGGCATCA
CAGCGCTTTGCTTGGTCGGCGATGCGGACGCCGTGTGTGTCTGTAGAGGT
AGGCATATATGTTGCGTAATTGCACAGTGCTCCATACAGGCAACTCAGTG
CACCCTATGAGGTATGTTTGTATACTTTTGTTGCAGCAAGTATACTTGAA
ACTACTTCTCTAGTGTGCTGGTATCTTAGGAGGCTGCATTGCAAAGTGAA
TGCAACAGAACAGAAGTGATGTTTGTTGGAGGTACCTGGCATCAAGGCAC
TCTTGGCTTGGTCAGAGAAGTGGACGCTAGTGTGTGCCTGTAGATGAAGG
TATGTATCATTGAGTGACCACGGTGATTGGTGGAAGGCACTTGCGACTAA
CCATCCTTTGTCACCTAGAGCTCTACGATCTTTTGATTCGTTTCCATTGA
GTAATTGCTCAGTGCTCAACACAGGCCGAAAAGTGGGCCTTTTACAAGAG
CATGCAGGCTGGACGGACGGACGCAATAGTTGACAAGGGTTGAGTTTGTC
GCAGACATCAGCAATGTGCTACTTTGCAGTGCAGTTGCAGTTGAAGTCTG
AACTTCGCCCCAGCACGAGAGCTACCACCCTGGAGCCCAGAATACTGTGC
ATGTGATGGACAACAGGCATACACCATGTGCAACAGGTATGTCTTGCGGA
ATGGCAGGGGCGGCAAGAGAGACCGTTGCTCATGATCTGCTTTTCCCAGA
CACACAAAGGAGAGTAGTGAATCACAGCAGCGCAGCCAATCTTGCTGTGT
GTCTATATGCACATGTAACACAGTGTACCTCGAAGTATGTATGAACGAGA
CAAGGGAGTCAGCACTACAGTTTGGGAGCAGGGGTCCATGCAGATCTCCT
CGATGTCTGCACCTCATTGAGCACACTGCTACAGCACACCCCAACTTCAA
CATGCACCCATCCACTTTCAAGTTGGGATGGTTGTTTGTTTCGACACATT
TATCACCCACGCCCCGCCATGTCGATGGCATTGCGCATTGCTCACATTGC
AGAGTCAATCGTGTGTACCCATGCGAGCCTGGCACCGTCATGAACGACAT
CCAATGTGCCCACGTTTGACAATGACATGTATACTCACTCAAAAATGAGC
AACGTTCTGATGCTGTGCCCTGGTGCATGCCTCCTCATTCCAGCATCTTT
CCAGCAGTTAGGTGTCGGCGCCGTCATGACCGCCTTTGCCAACATCACTG
GTTGTAGTGTATGATATGGCAGCACTAATCTTTGAAATATCCACGCACCA
CACTAATGCCTGTGCCCCCTGCTGCCCCCCCCCCCCCTTCTACCATCACT
CCGTCATCACAGGCGTCAGCCTTGGCGCCGCAATGAACGACATCGCCATG
GCCACCGTATTTTATGTATGTTACCCCAGGCTACACTGATGTCCTTAGTG
TATATGATACCAGGCGCCACACTGACCCCTGTGCTGCGCTGCACCCCCGC
CCTTGTGCTATGATGCCATCACCTAGGCGTCAGTCTCGGCGCCATGATGA
CCGCCGTTGCCAACACCACTACTCTTTCGAAGTAGTGGTGTATAATGTGA
TATCATTTTTAAAAAATTTAAGATCCACGCATCACACTGATGCTTGTACC
CCCTGTGCTGCCATCACCACAGGCGTCAGCCTCGGCGCCGTGGTGAACGA
CTTTCAATTCGCCAACATGCCTCGAACGCTAAAAGCTTGCACACATAAGT
CTTTTTGCCTACTGTGGTTATGGTGGCACTATTTGACTCGTGGCCAATGA
CTGCAGCAGCGGCGACCACGGTTATTGGTGGAAGGCACTTGCGGCTAACC
ATCCCTTGTCACCTAGAGCTCAACGATCTCTTGATTCGTTTTTCATACAT
ACAGTGCCAACAGTCTGATATTTGAAACGCATACTCACACACTCGATCAC
TAACGAGCATCAGCTGATGCCTGTGCCCCCTACTGTTTCTCCGTGTTCAA
CTACCTTAGGGTTAGGGTTAGGGTTAGGGTTAGGGTTAGCCTCACCGCCG
CAGCAGGTGTCAGCCTGGGCGCCGTCATGAACGACATCGCCAACATCACA
CTTTCACCACTGTATGAAGTACGGTATTACCACAGTAGTCGTCAACGCAT
CACACTGATGCCTGTGCCCCCCCCCCTTCTACAATCATCTCACGACCACA
GGTGTCAGCCTCGGCGCAGTAATGAACGACATCGCCATGGCCACCGTCTC
CAGCGACCGCAAGGAATATACACTGTCTGAAACAGTAATATGATATTTCA
GGATAGGTGACCTAGTCTATGGGCAACATGCCGACCCCCCTGTGCCCTGC
TACATTCTTATCCCATGTCCTCACCGCCACAGGAGGCGTCAGCATCGGCG
CGGTAATGAACGACATTGCCATGGCCACCGTCTCCAGCGACCGTAGGGAG
GGCCTCACCTCCCTCATCCAATCCCTCACCGCCGCCGCGGGCCGCGCGCG
CCACTCCCTCTCCGCCGCCGGCAGCAGCGGCGGCGCAGCGTCGCGCAGCG
TCGACGTGGTGTTTGCGGGCTCGAGCTGCGGCGCGCTGGTCGCGTGCGCG
CTGGCGGCGGATGTGGACGTGGCGAAGTTGATTGCGCTCGCGCAGACGCT
GACGGACTTCGCAGCGCGGCGCTTCGCGGGGCCCGCCGGCGCCATGACGC
GCATCGTGGAGAAGGTGCGCGTGTGTTGTGTGTACTTCCATGGGGTATGT
ATATGCGCAAAGTGTCATAGATACGTGCATAAATGCACAGGGCGCTTTGC
GGGGCCCGCCGGCGCCATGACGCGCATCGTGGAGAAGGTGCGCATATGTT
ATGTGTACATGGGGTATGTATTGCACTGTGTATTCATACATGCCCAACGA
TGACGACGGCGCCATGACGTGCGTCGTGGAGAAGGTGCGCGCGCGTGGTT
CGGAATCCCTGTGTATGATCATGTGATTGCAAACGTGCCCTGCTGCCGCG
CAGCGCGCACCGCCGCCATGCGGTGAAGTTATACCCATAGGTTGTAACCA
GAAAGCGAGCCTTTGCTGAGGTCAGGGACGTGTTTGCTGAGCAGCGCTGC
GCCGTTGTTGTACTGCGTGCCGCAGAGGATCCGCGAGTTGCTGCCTCGTC
ACATACGTGTTTGCTGAGCAGTGCTGCGCCGTTGCCGCACCGCGCGCCGC
AGGGGATCCGCGAGCTGCTGCCGAGCGGCGCGCACTGCCGCCTCACGGTG
AACACTTTGAACCCACCTGCAATTAAGTCAGAGGTCACACACTTTTGAAG
TAGTACACGGCATTTACACGGCCACAAGTGGACTTTCGTGTGACAGGGGA
TCCGCGAGCTGCTGCCGCGCGGCGCGCACCGCCGCCTCTTGGTGAAGAAA
CCCTATGCAAAGTCAACAGGATAGAAGTACATGCCAAGGTTGTCACATAC
GTGTTTCAGCAATTGCTGAGCAGTGCTGCGCCGTTGCCACGCCGCACGCC
GCAGGGCATCCGCGAGCTGCTGCCGCGCGGCTCCTACCGCCGCCTCACGG
GGCGCCTGCGCGTCTCCATCACGCTCCTCACGCCGGCGCCGCGCAACGTC
ACGGTGGACCGCTTCGACTCCGACGACGACGTGATCCGCGCGCTGCTGTG
CTCGTGCTACATACCCCTGTACTACGAGACGCCGCAGACGTGGGCGGGGC
GCGTGGCAGTTGACGGCGGTTTCACCGACAACCTGCCGCGCGGGGGCGGC
GCGGCGCCCACCGTCACCGTCTCGCCGTACAAGATAGAGCGCGCGGTGAT
CGGACCCCCCTCCGAAAGGCCCCCCTACCCGCCCTGGATGAGCCTTGTGC
CGGGCTCCCTCGATGAGTGCAAGGTGCTGCACGATGACGGTTTCGCGGAC
CTCATGAGCTGGCTGCGCGCGCTGCCGCAGCCGGTGGCACCGCCGCCGCC
GTCGCGGCGCAGCAGCAGCGGGAGCGTCTCCTCCGCTGCGGCGCCGCTGC
AGAGGTCAAATTCGGGGCAGTTCAGCCTGACCCCGCAGGCGTCCGGTCAC
TTTCAGCTGTAG back to topCoding sequence (CDS) from alignment at Contig_81:506529..513190- >mRNA_9796 ID=mRNA_9796|Name=jgi.p|Trimin1|336116|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1683bp|location=Sequence derived from alignment at Contig_81:506529..513190- (Tribonema minus UTEX_B_3156 ) ATGGGGCTGCCTCGTGGCGCCCAGACCGGCGCTGGTTGCCTGGGCGCAGC GCTAGCGTGCCTGTTGGTGCCACTCTTGGTCGCACTGGCACTGCATGCAG TGCTGTTCAGGCGCGCATGGCGGAGAGCACAGGCCATTGCCCTGTACCTG CTCTTCTACGTGGCCACGTGGGCATTTGCCGGCGCCAGGGTGATGTTGTT GCCAGTCAGGAAGCTGGTGACGAAGCTCTGGGACAGCAGATGGCGACATA GGAAGCGCATAGACACCAGCGAGTGGAAGGGGGGGGAGCAGGGGCCTCTG CCACTGGCGCAGATGGTGACTCTGATGGATGCCCTCAATGCGTGGGCCAG GCGGAAGGGGCCGGGCTGCAGCGCAGAGGCGGGGGCGCCGCTGTGCTTCA GCTTTTCCGGCTGTTCCTGGCTCATGTGGTACCACCTCGGCGTCGCGCGC GCGATCCAGACCAACGTCCTGCGCGCCCAAGATGCCGTAACGCTAGTGCA GGAGCTGCAGGCGCCGCCGCCCGACGCGCCGCGGCAGCGCGCGCAGACGA CGCCGCTGACTGACGGCGACAGCGCTCAGCAGCAGGGGGAGCGCGCCAGG GGGCAGACGGAAGGGGGGGGCGGGGGGGAGGGGGAGGGGGAGGGGGGGGG TGGGGGGGGGGAGATGGTGACGCCGGTGAAGCGCAAGAACTCGCTGCTGA ACATGCTGCAGATGGTGGCGACGCCGAGCAGGGAGGCGGGCGGCGGAGGA GGCGTCAGCATCGGCGCGGTAATGAACGACATTGCCATGGCCACCGTCTC CAGCGACCGTAGGGAGGGCCTCACCTCCCTCATCCAATCCCTCACCGCCG CCGCGGGCCGCGCGCGCCACTCCCTCTCCGCCGCCGGCAGCAGCGGCGGC GCAGCGTCGCGCAGCGTCGACGTGGTGTTTGCGGGCTCGAGCTGCGGCGC GCTGGTCGCGTGCGCGCTGGCGGCGGATGTGGACGTGGCGAAGTTGATTG CGCTCGCGCAGACGCTGACGGACTTCGCAGCGCGGCGCTTCGCGGGGCCC GCCGGCGCCATGACGCGCATCGTGGAGAAGCAATTGCTGAGCAGTGCTGC GCCGTTGCCACGCCGCACGCCGCAGGGCATCCGCGAGCTGCTGCCGCGCG GCTCCTACCGCCGCCTCACGGGGCGCCTGCGCGTCTCCATCACGCTCCTC ACGCCGGCGCCGCGCAACGTCACGGTGGACCGCTTCGACTCCGACGACGA CGTGATCCGCGCGCTGCTGTGCTCGTGCTACATACCCCTGTACTACGAGA CGCCGCAGACGTGGGCGGGGCGCGTGGCAGTTGACGGCGGTTTCACCGAC AACCTGCCGCGCGGGGGCGGCGCGGCGCCCACCGTCACCGTCTCGCCGTA CAAGATAGAGCGCGCGGTGATCGGACCCCCCTCCGAAAGGCCCCCCTACC CGCCCTGGATGAGCCTTGTGCCGGGCTCCCTCGATGAGTGCAAGGTGCTG CACGATGACGGTTTCGCGGACCTCATGAGCTGGCTGCGCGCGCTGCCGCA GCCGGTGGCACCGCCGCCGCCGTCGCGGCGCAGCAGCAGCGGGAGCGTCT CCTCCGCTGCGGCGCCGCTGCAGAGGTCAAATTCGGGGCAGTTCAGCCTG ACCCCGCAGGCGTCCGGTCACTTTCAGCTGTAG back to top
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