mRNA_976 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|148098
Unique NamemRNA_976
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|148098 vs. uniprot
Match: A0A836CRG7_9STRA (SET domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRG7_9STRA)

HSP 1 Score: 189 bits (481), Expect = 3.240e-61
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1
Query:    1 STSALYPLASMAAHSCVPNCMYTSQNPYGSISYFAAHSIAAGDLITISYADCGCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKCAR 273
            STSALYPLASMAAHSCVPNCMYTSQNPYGSISYFAAHSIAAGDLITISYADCGCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKCAR
Sbjct:    1 STSALYPLASMAAHSCVPNCMYTSQNPYGSISYFAAHSIAAGDLITISYADCGCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKCAR 91          
BLAST of jgi.p|Trimin1|148098 vs. uniprot
Match: A0A836C7V2_9STRA (SET domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7V2_9STRA)

HSP 1 Score: 135 bits (340), Expect = 8.760e-38
Identity = 65/87 (74.71%), Postives = 71/87 (81.61%), Query Frame = 1
Query:   10 ALYPLASMAAHSCVPNCMYTSQNPYGSISYFAAHSIAAGDLITISYADCGCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKCA 270
            AL+PLAS AAHSCVPNC++T+QNPYG ISYFAA  IAAGD IT+SY     AAPTLERW   A +KDFICTCPQCS PDATR VKCA
Sbjct:  149 ALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSYVAPASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCA 235          
BLAST of jgi.p|Trimin1|148098 vs. uniprot
Match: A0A835ZAV2_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV2_9STRA)

HSP 1 Score: 141 bits (356), Expect = 3.420e-37
Identity = 62/91 (68.13%), Postives = 80/91 (87.91%), Query Frame = 1
Query:    1 STSALYPLASMAAHSCVPNCMYTSQNPYGSISYFAAHSIAAGDLITISYADCGCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKCAR 273
            S +A++ LAS AAHSC+PNC++T++NPYG+ISYFAAH I+AG+LITI+YA+ G A P L+RWT+LAR+KDFIC CPQC+ PDATRG+KC R
Sbjct:  121 SLAAIFALASKAAHSCIPNCLWTTENPYGAISYFAAHPISAGELITITYANSGSAVPKLQRWTDLARSKDFICACPQCTGPDATRGIKCLR 211          
BLAST of jgi.p|Trimin1|148098 vs. uniprot
Match: A0A836CJK1_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJK1_9STRA)

HSP 1 Score: 131 bits (329), Expect = 7.590e-34
Identity = 61/88 (69.32%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   10 ALYPLASMAAHSCVPNCMYTSQNPYGSISYFAAHSIAAGDLITISYADCGCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKCAR 273
            AL+ LAS AAHSCVPNC+ T+ NPYG+ISYFAAH IAAGDL+TISY  C   A TL+RWTELAR+KDF+C C +C+ PDAT GV+C R
Sbjct:   75 ALFSLASKAAHSCVPNCVVTTCNPYGAISYFAAHPIAAGDLVTISYIACSPDASTLDRWTELARSKDFVCACARCAGPDATLGVRCVR 162          
BLAST of jgi.p|Trimin1|148098 vs. uniprot
Match: A0A836CC33_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC33_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.190e-33
Identity = 63/89 (70.79%), Postives = 75/89 (84.27%), Query Frame = 1
Query:    7 SALYPLASMAAHSCVPNCMYTSQNPYGSISYFAAHSIAAGDLITISYADCGCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKCAR 273
            SA++ LAS AAH+CVPNC+ T+QNPYG I Y+AA  IAAGDLITI+Y D G AAPTLERW ELARTKDF+C C +C+AP+ATRG+ CAR
Sbjct: 1279 SAVFRLASKAAHACVPNCVATTQNPYGCIGYYAAQPIAAGDLITIAYMDSG-AAPTLERWEELARTKDFVCACARCAAPNATRGIACAR 1366          
BLAST of jgi.p|Trimin1|148098 vs. uniprot
Match: A0A835YVF7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF7_9STRA)

HSP 1 Score: 117 bits (292), Expect = 1.730e-30
Identity = 58/88 (65.91%), Postives = 69/88 (78.41%), Query Frame = 1
Query:   10 ALYPLASMAAHSCVPNCMYTSQNPYGSISYFAAHSIAAGDLITISYADCGCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKCAR 273
            A++ LAS A H+CV NC  T+QNPYG +SY+AA  IAAGDL T++YAD   AAPTLER   LARTKDF+C C +C+APDATRGV CAR
Sbjct:  158 AVFCLASRAVHACVLNCAVTTQNPYGGMSYYAAQPIAAGDLNTVAYADSS-AAPTLERLERLARTKDFVCACARCAAPDATRGVACAR 244          
BLAST of jgi.p|Trimin1|148098 vs. uniprot
Match: A0A835YNU4_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU4_9STRA)

HSP 1 Score: 120 bits (301), Expect = 3.420e-30
Identity = 57/80 (71.25%), Postives = 64/80 (80.00%), Query Frame = 1
Query:   34 AAHSCVPNCMYTSQNPYGSISYFAAHSIAAGDLITISYADCGCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKCAR 273
            AAHSC PNC++TSQ P G++SYFAA  IAAGD ITI Y+D    APTLERW ELA+ KDFIC CPQCS P ATRGV+CAR
Sbjct:  118 AAHSCTPNCLWTSQTPCGAMSYFAAQPIAAGDPITICYSDAS-TAPTLERWAELAQAKDFICACPQCSGPGATRGVRCAR 196          
BLAST of jgi.p|Trimin1|148098 vs. uniprot
Match: A0A835Z1T0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1T0_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.510e-30
Identity = 53/88 (60.23%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   10 ALYPLASMAAHSCVPNCMYTSQNPYGSISYFAAHSIAAGDLITISYADCGCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKCAR 273
            A++ LAS AAHSCVPNC++T++NPYG++SY+AAH IAAGDL+TI+   CG    TL+RW +LAR +D +C C +C+ PDATRG++CAR
Sbjct:  152 AVFSLASKAAHSCVPNCLFTTKNPYGAMSYYAAHPIAAGDLVTIARVACG-GMSTLDRWAQLARRRDCLCACARCAGPDATRGIRCAR 238          
BLAST of jgi.p|Trimin1|148098 vs. uniprot
Match: A0A836CCS1_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCS1_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.620e-27
Identity = 57/91 (62.64%), Postives = 69/91 (75.82%), Query Frame = 1
Query:    4 TSALYPLASMAAHSCVPNCMYTSQNPYGSISYFAAHSIAAGDLITISYADC--GCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKCA 270
            T AL+ +AS AA+SCVPNC+ + QNPYG ISY+AAH IAAGD ITI++     G A PTLERW+ LA  +D +CTC QC+ PD TRGVKCA
Sbjct:  162 TVALFRVASKAAYSCVPNCISSWQNPYGVISYYAAHPIAAGDPITIAFGTLTPGNATPTLERWSMLASRRDVVCTCAQCTGPDVTRGVKCA 252          
BLAST of jgi.p|Trimin1|148098 vs. uniprot
Match: A0A836CC60_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC60_9STRA)

HSP 1 Score: 106 bits (264), Expect = 5.270e-25
Identity = 53/88 (60.23%), Postives = 67/88 (76.14%), Query Frame = 1
Query:    7 SALYPLASMAAHSCVPNCMYTSQNPYGS-ISYFAAHSIAAGDLITISYADCGCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKC 267
            SA++ +AS AAH+CVPNC+ T+ NP G  ISY+AAH IAAGDL+TI+Y     A  TLERW +LAR+KDF+C C QC+ PD T GV+C
Sbjct:   75 SAVFRVASKAAHACVPNCLSTTCNPCGGCISYYAAHPIAAGDLVTIAYKKWD-AQQTLERWAKLARSKDFVCACAQCAGPDVTCGVRC 161          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148098 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
A0A836CRG7_9STRA3.240e-61100.00SET domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A836C7V2_9STRA8.760e-3874.71SET domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A835ZAV2_9STRA3.420e-3768.13SET domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A836CJK1_9STRA7.590e-3469.32MYND-type domain-containing protein n=1 Tax=Tribon... [more]
A0A836CC33_9STRA1.190e-3370.79MYND-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835YVF7_9STRA1.730e-3065.91Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YNU4_9STRA3.420e-3071.25MYND-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835Z1T0_9STRA4.510e-3060.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CCS1_9STRA1.620e-2762.64MYND-type domain-containing protein n=1 Tax=Tribon... [more]
A0A836CC60_9STRA5.270e-2560.23MYND-type domain-containing protein n=1 Tax=Tribon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_1contigContig_1:371876..372148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|148098|gw1.1.270.1
DescriptionSET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
COG categoryH
Max annot lvl5794|Apicomplexa
EggNOG OGs2CZUN@1|root,2SBR1@2759|Eukaryota,3YBPN@5794|Apicomplexa,3YJWK@5796|Coccidia,3YU0M@5809|Sarcocystidae
Evalue8.53e-11
Seed ortholog5811.TGME49_088330
Hectar predicted targeting categoryother localisation
TranscriptId148420
TrackFilteredModels1
ProteinId148098
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148098gene_976Tribonema minus UTEX_B_3156 geneContig_1 371876..372148 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_976_1exon_976_1Tribonema minus UTEX_B_3156 exonContig_1 371876..372148 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_976CDS_976Tribonema minus UTEX_B_3156 CDSContig_1 371876..372148 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148098Trimin1|148098|gw1.1.270.1Tribonema minus UTEX_B_3156 polypeptideContig_1 371876..372148 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_976 ID=mRNA_976|Name=jgi.p|Trimin1|148098|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=273bp|location=Sequence derived from alignment at Contig_1:371876..372148- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGCACGTCGGCCCTCTACCCCCTGGCCTCCATGGCCGCGCACTCGTGCGT
CCCCAACTGCATGTACACCTCGCAGAACCCCTACGGCTCCATTTCTTACT
TCGCCGCGCACTCCATCGCGGCGGGCGACCTCATCACCATCTCCTACGCG
GACTGCGGCTGCGCGGCACCGACGCTGGAGCGCTGGACCGAGCTCGCGCG
CACCAAAGACTTCATATGCACCTGTCCGCAGTGCTCCGCGCCGGACGCCA
CCCGCGGCGTAAAGTGCGCACGC
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protein sequence of jgi.p|Trimin1|148098

>Trimin1|148098|gw1.1.270.1 ID=Trimin1|148098|gw1.1.270.1|Name=jgi.p|Trimin1|148098|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=91bp
STSALYPLASMAAHSCVPNCMYTSQNPYGSISYFAAHSIAAGDLITISYA
DCGCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKCAR
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mRNA from alignment at Contig_1:371876..372148-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_976 ID=mRNA_976|Name=jgi.p|Trimin1|148098|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=273bp|location=Sequence derived from alignment at Contig_1:371876..372148- (Tribonema minus UTEX_B_3156 )
AGCACGTCGGCCCTCTACCCCCTGGCCTCCATGGCCGCGCACTCGTGCGT CCCCAACTGCATGTACACCTCGCAGAACCCCTACGGCTCCATTTCTTACT TCGCCGCGCACTCCATCGCGGCGGGCGACCTCATCACCATCTCCTACGCG GACTGCGGCTGCGCGGCACCGACGCTGGAGCGCTGGACCGAGCTCGCGCG CACCAAAGACTTCATATGCACCTGTCCGCAGTGCTCCGCGCCGGACGCCA CCCGCGGCGTAAAGTGCGCACGC
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Coding sequence (CDS) from alignment at Contig_1:371876..372148-

>mRNA_976 ID=mRNA_976|Name=jgi.p|Trimin1|148098|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=273bp|location=Sequence derived from alignment at Contig_1:371876..372148- (Tribonema minus UTEX_B_3156 )
AGCACGTCGGCCCTCTACCCCCTGGCCTCCATGGCCGCGCACTCGTGCGT
CCCCAACTGCATGTACACCTCGCAGAACCCCTACGGCTCCATTTCTTACT
TCGCCGCGCACTCCATCGCGGCGGGCGACCTCATCACCATCTCCTACGCG
GACTGCGGCTGCGCGGCACCGACGCTGGAGCGCTGGACCGAGCTCGCGCG
CACCAAAGACTTCATATGCACCTGTCCGCAGTGCTCCGCGCCGGACGCCA
CCCGCGGCGTAAAGTGCGCACGC
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