mRNA_976 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|148098 vs. uniprot
Match: A0A836CRG7_9STRA (SET domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRG7_9STRA) HSP 1 Score: 189 bits (481), Expect = 3.240e-61 Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 Query: 1 STSALYPLASMAAHSCVPNCMYTSQNPYGSISYFAAHSIAAGDLITISYADCGCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKCAR 273 STSALYPLASMAAHSCVPNCMYTSQNPYGSISYFAAHSIAAGDLITISYADCGCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKCAR Sbjct: 1 STSALYPLASMAAHSCVPNCMYTSQNPYGSISYFAAHSIAAGDLITISYADCGCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKCAR 91
BLAST of jgi.p|Trimin1|148098 vs. uniprot
Match: A0A836C7V2_9STRA (SET domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7V2_9STRA) HSP 1 Score: 135 bits (340), Expect = 8.760e-38 Identity = 65/87 (74.71%), Postives = 71/87 (81.61%), Query Frame = 1 Query: 10 ALYPLASMAAHSCVPNCMYTSQNPYGSISYFAAHSIAAGDLITISYADCGCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKCA 270 AL+PLAS AAHSCVPNC++T+QNPYG ISYFAA IAAGD IT+SY AAPTLERW A +KDFICTCPQCS PDATR VKCA Sbjct: 149 ALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSYVAPASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCA 235
BLAST of jgi.p|Trimin1|148098 vs. uniprot
Match: A0A835ZAV2_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV2_9STRA) HSP 1 Score: 141 bits (356), Expect = 3.420e-37 Identity = 62/91 (68.13%), Postives = 80/91 (87.91%), Query Frame = 1 Query: 1 STSALYPLASMAAHSCVPNCMYTSQNPYGSISYFAAHSIAAGDLITISYADCGCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKCAR 273 S +A++ LAS AAHSC+PNC++T++NPYG+ISYFAAH I+AG+LITI+YA+ G A P L+RWT+LAR+KDFIC CPQC+ PDATRG+KC R Sbjct: 121 SLAAIFALASKAAHSCIPNCLWTTENPYGAISYFAAHPISAGELITITYANSGSAVPKLQRWTDLARSKDFICACPQCTGPDATRGIKCLR 211
BLAST of jgi.p|Trimin1|148098 vs. uniprot
Match: A0A836CJK1_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJK1_9STRA) HSP 1 Score: 131 bits (329), Expect = 7.590e-34 Identity = 61/88 (69.32%), Postives = 72/88 (81.82%), Query Frame = 1 Query: 10 ALYPLASMAAHSCVPNCMYTSQNPYGSISYFAAHSIAAGDLITISYADCGCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKCAR 273 AL+ LAS AAHSCVPNC+ T+ NPYG+ISYFAAH IAAGDL+TISY C A TL+RWTELAR+KDF+C C +C+ PDAT GV+C R Sbjct: 75 ALFSLASKAAHSCVPNCVVTTCNPYGAISYFAAHPIAAGDLVTISYIACSPDASTLDRWTELARSKDFVCACARCAGPDATLGVRCVR 162
BLAST of jgi.p|Trimin1|148098 vs. uniprot
Match: A0A836CC33_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC33_9STRA) HSP 1 Score: 131 bits (330), Expect = 1.190e-33 Identity = 63/89 (70.79%), Postives = 75/89 (84.27%), Query Frame = 1 Query: 7 SALYPLASMAAHSCVPNCMYTSQNPYGSISYFAAHSIAAGDLITISYADCGCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKCAR 273 SA++ LAS AAH+CVPNC+ T+QNPYG I Y+AA IAAGDLITI+Y D G AAPTLERW ELARTKDF+C C +C+AP+ATRG+ CAR Sbjct: 1279 SAVFRLASKAAHACVPNCVATTQNPYGCIGYYAAQPIAAGDLITIAYMDSG-AAPTLERWEELARTKDFVCACARCAAPNATRGIACAR 1366
BLAST of jgi.p|Trimin1|148098 vs. uniprot
Match: A0A835YVF7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF7_9STRA) HSP 1 Score: 117 bits (292), Expect = 1.730e-30 Identity = 58/88 (65.91%), Postives = 69/88 (78.41%), Query Frame = 1 Query: 10 ALYPLASMAAHSCVPNCMYTSQNPYGSISYFAAHSIAAGDLITISYADCGCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKCAR 273 A++ LAS A H+CV NC T+QNPYG +SY+AA IAAGDL T++YAD AAPTLER LARTKDF+C C +C+APDATRGV CAR Sbjct: 158 AVFCLASRAVHACVLNCAVTTQNPYGGMSYYAAQPIAAGDLNTVAYADSS-AAPTLERLERLARTKDFVCACARCAAPDATRGVACAR 244
BLAST of jgi.p|Trimin1|148098 vs. uniprot
Match: A0A835YNU4_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU4_9STRA) HSP 1 Score: 120 bits (301), Expect = 3.420e-30 Identity = 57/80 (71.25%), Postives = 64/80 (80.00%), Query Frame = 1 Query: 34 AAHSCVPNCMYTSQNPYGSISYFAAHSIAAGDLITISYADCGCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKCAR 273 AAHSC PNC++TSQ P G++SYFAA IAAGD ITI Y+D APTLERW ELA+ KDFIC CPQCS P ATRGV+CAR Sbjct: 118 AAHSCTPNCLWTSQTPCGAMSYFAAQPIAAGDPITICYSDAS-TAPTLERWAELAQAKDFICACPQCSGPGATRGVRCAR 196
BLAST of jgi.p|Trimin1|148098 vs. uniprot
Match: A0A835Z1T0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1T0_9STRA) HSP 1 Score: 120 bits (301), Expect = 4.510e-30 Identity = 53/88 (60.23%), Postives = 72/88 (81.82%), Query Frame = 1 Query: 10 ALYPLASMAAHSCVPNCMYTSQNPYGSISYFAAHSIAAGDLITISYADCGCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKCAR 273 A++ LAS AAHSCVPNC++T++NPYG++SY+AAH IAAGDL+TI+ CG TL+RW +LAR +D +C C +C+ PDATRG++CAR Sbjct: 152 AVFSLASKAAHSCVPNCLFTTKNPYGAMSYYAAHPIAAGDLVTIARVACG-GMSTLDRWAQLARRRDCLCACARCAGPDATRGIRCAR 238
BLAST of jgi.p|Trimin1|148098 vs. uniprot
Match: A0A836CCS1_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCS1_9STRA) HSP 1 Score: 114 bits (284), Expect = 1.620e-27 Identity = 57/91 (62.64%), Postives = 69/91 (75.82%), Query Frame = 1 Query: 4 TSALYPLASMAAHSCVPNCMYTSQNPYGSISYFAAHSIAAGDLITISYADC--GCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKCA 270 T AL+ +AS AA+SCVPNC+ + QNPYG ISY+AAH IAAGD ITI++ G A PTLERW+ LA +D +CTC QC+ PD TRGVKCA Sbjct: 162 TVALFRVASKAAYSCVPNCISSWQNPYGVISYYAAHPIAAGDPITIAFGTLTPGNATPTLERWSMLASRRDVVCTCAQCTGPDVTRGVKCA 252
BLAST of jgi.p|Trimin1|148098 vs. uniprot
Match: A0A836CC60_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC60_9STRA) HSP 1 Score: 106 bits (264), Expect = 5.270e-25 Identity = 53/88 (60.23%), Postives = 67/88 (76.14%), Query Frame = 1 Query: 7 SALYPLASMAAHSCVPNCMYTSQNPYGS-ISYFAAHSIAAGDLITISYADCGCAAPTLERWTELARTKDFICTCPQCSAPDATRGVKC 267 SA++ +AS AAH+CVPNC+ T+ NP G ISY+AAH IAAGDL+TI+Y A TLERW +LAR+KDF+C C QC+ PD T GV+C Sbjct: 75 SAVFRVASKAAHACVPNCLSTTCNPCGGCISYYAAHPIAAGDLVTIAYKKWD-AQQTLERWAKLARSKDFVCACAQCAGPDVTCGVRC 161 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148098 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_976 ID=mRNA_976|Name=jgi.p|Trimin1|148098|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=273bp|location=Sequence derived from alignment at Contig_1:371876..372148- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AGCACGTCGGCCCTCTACCCCCTGGCCTCCATGGCCGCGCACTCGTGCGTback to top protein sequence of jgi.p|Trimin1|148098 >Trimin1|148098|gw1.1.270.1 ID=Trimin1|148098|gw1.1.270.1|Name=jgi.p|Trimin1|148098|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=91bp STSALYPLASMAAHSCVPNCMYTSQNPYGSISYFAAHSIAAGDLITISYAback to top mRNA from alignment at Contig_1:371876..372148- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_976 ID=mRNA_976|Name=jgi.p|Trimin1|148098|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=273bp|location=Sequence derived from alignment at Contig_1:371876..372148- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_1:371876..372148- >mRNA_976 ID=mRNA_976|Name=jgi.p|Trimin1|148098|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=273bp|location=Sequence derived from alignment at Contig_1:371876..372148- (Tribonema minus UTEX_B_3156 )back to top |