mRNA_9740 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|171360
Unique NamemRNA_9740
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|171360 vs. uniprot
Match: A0A835YTH5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTH5_9STRA)

HSP 1 Score: 179 bits (455), Expect = 6.030e-57
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 1 
Query:    1 MFNDIDLDGSGTVDCDEFLLLMIILKYCLFNKEQILAFCFRMYDXXXXXXXXXXXXMDLLHTVNNASPIFPGNFQRALDEFDVNKDGLIDFDEFRELDKR 300
            MFNDIDLDGSGTVDCDEFLLLMIILKYCLFNKEQILAFCFRMYDXXXXXXXXXXXXMDLLHTVNNASPIFPGNFQRALDEFDVNKDGLIDFDEFRELDKR
Sbjct:    1 MFNDIDLDGSGTVDCDEFLLLMIILKYCLFNKEQILAFCFRMYDXXXXXXXXXXXXMDLLHTVNNASPIFPGNFQRALDEFDVNKDGLIDFDEFRELDKR 100
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BLAST of jgi.p|Trimin1|171360 vs. uniprot
Match: A0A836CE87_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE87_9STRA)

HSP 1 Score: 112 bits (279), Expect = 2.500e-29
Identity = 59/129 (45.74%), Postives = 72/129 (55.81%), Query Frame = 1 
Query:    4 FNDIDLDGSGTVDCDEFLL------------------------------LMIILKYCLFNKEQILAFCFRMYDXXXXXXXXXXXXMDLLHTVNNASPIFPGNFQRALDEFDVNKDGLIDFDEFRELDKR 300
            F  +D DG+G VDC+EFL                               L+++L YCLF + QIL FCF  YD            M+LL TVNNASP+FPGNFQ AL+EFD NKDGLIDF+EF+ +DKR
Sbjct:    1 FRSLDSDGTGRVDCEEFLWYINAQRTPLTELVFGIVGADPHGALDFSAWLVLVLTYCLFTRAQILQFCFSQYDSNNTGCINEFRFMELLDTVNNASPVFPGNFQLALEEFDQNKDGLIDFNEFKAMDKR 129
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BLAST of jgi.p|Trimin1|171360 vs. uniprot
Match: F0YDP7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDP7_AURAN)

HSP 1 Score: 94.4 bits (233), Expect = 2.830e-23
Identity = 44/89 (49.44%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:   16 DLDGSGTVDCDEFLLLMIILKYCLFNKEQILAFCFRMYDXXXXXXXXXXXXMDLLHTVNNASPIFPGNFQRALDEFDVNKDGLIDFDEF 282
            DLDGSGT++ DEF  + ++L YC+++K+ IL FCF  YD            M LL +VNN +P+FPGNF   L  FD N DG+IDF EF
Sbjct:    2 DLDGSGTIEFDEF--VAVLLTYCMYSKDDILRFCFDTYDRDHSNSIDEQEFMALLSSVNNGTPMFPGNFTTVLQNFDSNDDGIIDFQEF 88
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BLAST of jgi.p|Trimin1|171360 vs. uniprot
Match: A0A8J2T1V8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T1V8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.740e-21
Identity = 47/100 (47.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:    1 MFNDIDLDGSGTVDCDEFLLLMIILKYCLFNKEQILAFCFRMYDXXXXXXXXXXXXMDLLHTVNNASPIFPGNFQRALDEFDVNKDGLIDFDEFRELDKR 300
            +F  +DLDGSGT++ DEF  + ++L YC++ K+ IL FCF  +D            M LL TVNN +P+FPGN   AL  FD N DGLIDF EF+ ++ R
Sbjct:  209 LFALMDLDGSGTIEFDEF--IAVLLTYCMYTKDDILRFCFDTFDKDKSNSIDENEFMALLSTVNNGAPLFPGNMGTALMNFDSNDDGLIDFQEFKVIETR 306
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BLAST of jgi.p|Trimin1|171360 vs. uniprot
Match: A0A7S1U8X3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8X3_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.880e-19
Identity = 54/100 (54.00%), Postives = 74/100 (74.00%), Query Frame = 1 
Query:    1 MFNDIDLDGSGTVDCDEFLLLMIILKYCLFNKEQILAFCFRMYDXXXXXXXXXXXXMDLLHTVNNASPIFPGNFQRALDEFDVNKDGLIDFDEFRELDKR 300
            +FN +DLDGSGT++  E+  + +++ YC+++KE IL F F    XXXXXXXXXXX M+L   +NNA+P+FPGN+  A+ +FDVN DGLIDF EF  L+ R
Sbjct:  133 LFNLMDLDGSGTIEFSEY--VRVLVTYCMYSKEDILRFAFDCXXXXXXXXXXXXXFMELCQGINNAAPMFPGNYSTAMKQFDVNDDGLIDFREFSMLNDR 230
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BLAST of jgi.p|Trimin1|171360 vs. uniprot
Match: A0A7S3ZNR4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNR4_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 7.910e-18
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:    1 MFNDIDLDGSGTVDCDEFLLLMIILKYCLFNKEQILAFCFRMYDXXXXXXXXXXXXMDLLHTVNNASPIFPGNFQRALDEFDVNKDGLIDFDEFRELDKR 300
            +F  +D+DG+  +D DE+  + + L YC++ K+ IL FCF ++D             ++   V+   P+F GNF+ AL+ FD N DGLIDFDEFR L+ R
Sbjct:  172 LFAMMDMDGNARLDFDEY--VAVALSYCMYTKDDILKFCFDLFDLDSGGTIDEKEFTEMCVAVSAGDPLFSGNFRMALENFDTNDDGLIDFDEFRNLNDR 269
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BLAST of jgi.p|Trimin1|171360 vs. uniprot
Match: K3WVM9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVM9_GLOUD)

HSP 1 Score: 80.1 bits (196), Expect = 1.590e-15
Identity = 43/129 (33.33%), Postives = 62/129 (48.06%), Query Frame = 1 
Query:    4 FNDIDLDGSGTVDCDEFLLLM------------------------------IILKYCLFNKEQILAFCFRMYDXXXXXXXXXXXXMDLLHTVNNASPIFPGNFQRALDEFDVNKDGLIDFDEFRELDKR 300
            F  IDLD SG +D DEF   +                               ++ YC++ +++IL F F  +D              L+  VN+  P+FPGNF+ AL EFD NKDGL+DF+EF+ ++KR
Sbjct:  191 FKQIDLDASGVIDYDEFFEFIDETKTPFSEGLXXXXXXXXXXXXXXXXXVHAMVLYCMYTRDEILQFAFDTFDPAKTGSIGEKEFKRLISVVNDGKPVFPGNFKNALSEFDRNKDGLLDFEEFKIMNKR 319
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BLAST of jgi.p|Trimin1|171360 vs. uniprot
Match: D0NZ23_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NZ23_PHYIT)

HSP 1 Score: 77.8 bits (190), Expect = 2.670e-15
Identity = 39/100 (39.00%), Postives = 58/100 (58.00%), Query Frame = 1 
Query:    1 MFNDIDLDGSGTVDCDEFLLLMIILKYCLFNKEQILAFCFRMYDXXXXXXXXXXXXMDLLHTVNNASPIFPGNFQRALDEFDVNKDGLIDFDEFRELDKR 300
            +F  ID D +GT+D +EF+   ++  YC++ +++IL F F  +D              L+  VN+    F GN   AL EFD NKDG+IDF+EF+ L+KR
Sbjct:   70 LFRMIDSDSNGTIDFEEFVHATVL--YCMYTRDEILRFAFDTFDPAASGSIGDKELRRLVSIVNDGQSRFSGNINTALTEFDRNKDGVIDFEEFKNLNKR 167
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BLAST of jgi.p|Trimin1|171360 vs. uniprot
Match: A0A7S2S8V8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S8V8_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 7.130e-15
Identity = 38/100 (38.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:    1 MFNDIDLDGSGTVDCDEFLLLMIILKYCLFNKEQILAFCFRMYDXXXXXXXXXXXXMDLLHTVNNASPIFPGNFQRALDEFDVNKDGLIDFDEFRELDKR 300
            +F  ID D +GT++ DE  ++ ++  YC+F++E +L F F  +D            +++   VN A  +FPGN  RA  +FD N DG+IDFDEF+E+++R
Sbjct:  159 LFALIDTDQNGTINFDE--MMQVLTTYCIFSQEDVLNFVFAYHDRDGTGSLDEKEFINMCVEVN-AEGLFPGNLNRAFRQFDTNDDGMIDFDEFKEINRR 255
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BLAST of jgi.p|Trimin1|171360 vs. uniprot
Match: A0A2R5GAC9_9STRA (Calcium-dependent protein kinase 5 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GAC9_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 7.790e-15
Identity = 38/100 (38.00%), Postives = 62/100 (62.00%), Query Frame = 1 
Query:    1 MFNDIDLDGSGTVDCDEFLLLMIILKYCLFNKEQILAFCFRMYDXXXXXXXXXXXXMDLLHTVNNASPIFPGNFQRALDEFDVNKDGLIDFDEFRELDKR 300
            +F+ ID+D S T+  +E  ++ ++  +C+FN+  IL + F+ +D            ++++  +N A  +FPGN QRA + FD N DGLIDFDEF+EL+ R
Sbjct:  144 VFSLIDVDNSNTISYNE--MVHVLTTFCIFNQNDILFYIFQQFDKDGSGSLDEHEFIEMIADLN-APAMFPGNLQRAFENFDTNADGLIDFDEFKELNNR 240
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|171360 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YTH5_9STRA6.030e-57100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CE87_9STRA2.500e-2945.74Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
F0YDP7_AURAN2.830e-2349.44Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A8J2T1V8_9STRA1.740e-2147.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1U8X3_9STRA1.880e-1954.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3ZNR4_9STRA7.910e-1840.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
K3WVM9_GLOUD1.590e-1533.33Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
D0NZ23_PHYIT2.670e-1539.00Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A7S2S8V8_9STRA7.130e-1538.00Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A2R5GAC9_9STRA7.790e-1538.00Calcium-dependent protein kinase 5 n=1 Tax=Hondaea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_81contigContig_81:154965..157298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|171360|e_gw1.81.163.1
DescriptionEF hand
COG categoryT
Max annot lvl121069|Pythiales
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota,1MJA7@121069|Pythiales
Evalue2.6e-16
Seed ortholog65071.PYU1_T009027
Hectar predicted targeting categoryother localisation
TranscriptId171682
TrackFilteredModels1
ProteinId171360
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171360gene_9740Tribonema minus UTEX_B_3156 geneContig_81 154965..157298 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171360Trimin1|171360|e_gw1.81.163.1Tribonema minus UTEX_B_3156 polypeptideContig_81 154965..157298 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9740_3exon_9740_3Tribonema minus UTEX_B_3156 exonContig_81 154965..155155 -
exon_9740_2exon_9740_2Tribonema minus UTEX_B_3156 exonContig_81 156572..156627 -
exon_9740_1exon_9740_1Tribonema minus UTEX_B_3156 exonContig_81 157243..157298 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9740CDS_9740Tribonema minus UTEX_B_3156 CDSContig_81 157243..157298 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9740 ID=mRNA_9740|Name=jgi.p|Trimin1|171360|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=303bp|location=Sequence derived from alignment at Contig_81:154965..157298- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCAACGACATTGACCTAGACGGCTCCGGCACGGTGGACTGCGATGA
GTTTCTGCTGCTCATGATCATCCTGAAGTACTGCCTCTTCAACAAGGAGC
AGATCCTCGCATTCTGTTTCAGGATGTATGACACGGACGGCTCCGGCAGC
ATAGACGAACAGGAGTTCATGGATCTGCTACACACCGTCAACAACGCCTC
ACCCATATTCCCTGGGAACTTCCAGCGCGCTCTGGACGAATTTGACGTCA
ACAAAGATGGCCTCATCGACTTTGATGAGTTCAGAGAACTGGACAAGAGG
TGA
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protein sequence of jgi.p|Trimin1|171360

>Trimin1|171360|e_gw1.81.163.1 ID=Trimin1|171360|e_gw1.81.163.1|Name=jgi.p|Trimin1|171360|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=101bp
MFNDIDLDGSGTVDCDEFLLLMIILKYCLFNKEQILAFCFRMYDTDGSGS
IDEQEFMDLLHTVNNASPIFPGNFQRALDEFDVNKDGLIDFDEFRELDKR
*
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mRNA from alignment at Contig_81:154965..157298-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9740 ID=mRNA_9740|Name=jgi.p|Trimin1|171360|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2334bp|location=Sequence derived from alignment at Contig_81:154965..157298- (Tribonema minus UTEX_B_3156 )
ATGTTCAACGACATTGACCTAGACGGCTCCGGCACGGTGGACTGCGATGA
GTTTCTGTCGCTCATTGACATTGAGCGCAGCCCCTTCACGGACAAGGTCT
TTCAGATAGTAGGGCAGGATGCAGAGTCCGTGATTGGCTTCAGCGCGCTG
CTCATGATCATCCTCAAGTACTGCCTCTTCAACAAGGAGCAGATCCTCGC
ATGTGAGTGAAGTTGAAGTCGATGATGGGGGCTGCTCATTAGCATCCTGA
AGTGCTGTCCTCTCATGTGAGTGAAGTTAAACTTGATAATGCGGGCTGCT
CGTGATCATCGTCGAGTACTGCCTCTTCAACAAGGAGCAGATGTGAGTGA
AGTTGAAGTTGATCATGCGGCCAACTACACCCCAATGAGTCACAGTATGG
TCGTGTAATGCGCTTTAACAATCAGTTGGTAGCATGCAGAGACTAACAAC
CTCATGACATCCTGAAGTACTGCCTCTTCAACAAGGAGCAGATCCTCACA
TGTGAGTGAAGTTGAAGTTGATTAGGCTGGCTGCTCATGATGATCTTGAA
AACTGCCTCTTGAAACAGCAGATCCTCATGTGAGTGAAGTTGAAGGTGAT
TGTGCGGGCTGCTCATGATCATCTTGAAGTACTGCTCCTGCATGTGAGTG
AAGTTGAATTTGATTGTGCAGGCTGCTCATGATCATCCTGAAGTACTGCC
TCTTCAACAAGGAGCAGATCCTCGCATGTGAGTGCGGGCACGTGAAGTTG
ATGCTGGTGTTGAAGTTTGTTGAACCCTGCAAGAACTGGTGATAACGACG
TGCACATGCTTAAAGTTTGGTGTGCAGCTTGAGATCATGCAAGCCTGGTG
ATAAACGACGAGATGCTGATGAACACATCTTGCACGCCTGGCTTTGTGAG
CGGGTTGGTCTTTCTGCCCATGGCATTATTGCAGCGTAAGGGTTAGGGGT
AGGGTTAGGACTCGTAATAGGGTTTAATGATCACGACGCAAGGGTCACCT
GATGTATCAAAGCAGTGACAATCAGGTGGTTGGCTGATGGACAACCCGAT
GCACCTGCTGCACCATCATCAATGCGCTGCTCACCTTGCATCTGCATGTC
AGTGTTAGGGTGTACAGTTGTTGTATCTTTGTGATCTGTCCCAGGTGAGC
ATTCATTGACATACATACATGCGTACCATACTGTGGAATAAGCTACATGC
CTTCCGGTTATGAGCATCTACCGCCTTGCTGAGGGTTAGGGCTAGGGTTA
AGGTTAGGGTTAGGGTTAGGGTTAGGGATAGGGTTAGGGTCTAACCCTAT
CTGCTGCCATGAAAGCACTGTAAGCATCGCGACAAGTGACGGCACTTGTC
TTCGCCGCAAACAGCACTTGTACTTCTTGTGAACTCTCGCTTAAGACGCA
AAAACCGCAGATGGGAGATGTCCAGTTTGCTACCTGTCTTTTGAAGACTT
GAACGTGCTTTGTGTCTGTCATCAAGGACTTGTGCGCACAGCCAGTGACT
CTGGCCCATCTGCCACCACTTTGGTAGTCTTTTTGAGATATGTAAACACG
TATTGGCATGTCGTTGGCTACATACACTAGTGGTGACTGTGATGCTGACT
GAATCTCTGCCTGCTCCGTCACAACACCGCCAGCCGCTTTCAGTATGTGT
GATGCTGACTTCTTTCAAGTCTACGTACTTTTAGCGCAGTGGCCATCGCA
CGGGCAGTGGATTCAGAACAAGTATGATGCTGACTTTCACCGACTGTCTT
TGTGTGCTTTGGCAGTTTGTTTTAGGGTTAGGGTTAGGCATGACATATGT
AACCTCGAAGTGTAGAATGATTTCAAATAAAACTTGCCAGTGAGGTTTGC
ATGTGAGGTTGACCGCTTCTCCGGTTCTCGTGCGGTCACATCCAGTTGAA
CTTTGCATGTGAGTTGACCGCTTCTGTGCCATCACACCGGCAGTCCATTC
CAGGATGTACAACACTGAATTTTTGCAACTGCCTATACCTCCACCCATTC
CTCACCGCTGCAACAGTCTGTTCCAGGATGTATGACACGGTAACCATCAC
ATCGTACCAGCAGAGTGTCTTCAGAAAAAGAATGACGCTGACACTCACCA
ACTGTAAAAAACTGTGCCTTGTGTCTGCTGCTTTTGTTTGCAGTCTGTTT
CAGGATGTATGACACGGACGGCTCCGGCAGCATAGACGAACAGGAGTTCA
TGGATCTGCTACACACCGTCAACAACGCCTCACCCATATTCCCTGGGAAC
TTCCAGCGCGCTCTGGACGAATTTGACGTCAACAAAGATGGCCTCATCGA
CTTTGATGAGTTCAGAGAACTGGACAAGAGGTGA
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Coding sequence (CDS) from alignment at Contig_81:154965..157298-

>mRNA_9740 ID=mRNA_9740|Name=jgi.p|Trimin1|171360|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=303bp|location=Sequence derived from alignment at Contig_81:154965..157298- (Tribonema minus UTEX_B_3156 )
ATGTTCAACGACATTGACCTAGACGGCTCCGGCACGGTGGACTGCGATGA
GTTTCTGCTGCTCATGATCATCCTGAAGTACTGCCTCTTCAACAAGGAGC
AGATCCTCGCATTCTGTTTCAGGATGTATGACACGGACGGCTCCGGCAGC
ATAGACGAACAGGAGTTCATGGATCTGCTACACACCGTCAACAACGCCTC
ACCCATATTCCCTGGGAACTTCCAGCGCGCTCTGGACGAATTTGACGTCA
ACAAAGATGGCCTCATCGACTTTGATGAGTTCAGAGAACTGGACAAGAGG
TGA
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