mRNA_973 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|182527
Unique NamemRNA_973
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|182527 vs. uniprot
Match: A0A836CPM4_9STRA (Protein YIPF n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPM4_9STRA)

HSP 1 Score: 388 bits (997), Expect = 1.430e-135
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 2 
Query:   77 MAESPIYDGRLGGAPGNMAYYNTLDEPVSETIMRDLRQVGSKLKIVLMPKGDQEGVLKKLKEWDLWGPLLVCLVLSIMLSSTAPANQGALVFASVFVVVWCGAAMVTVNAQLLGGGISFFQSVCVLGYCVFPLVLASAACLIAKALTGLFFIRALLVVVGFMWSTRASVVFIKQIISPERKVLAVYPVFFFYAFLSWMVLLQ 682
            MAESPIYDGRLGGAPGNMAYYNTLDEPVSETIMRDLRQVGSKLKIVLMPKGDQEGVLKKLKEWDLWGPLLVCLVLSIMLSSTAPANQGALVFASVFVVVWCGAAMVTVNAQLLGGGISFFQSVCVLGYCVFPLVLASAACLIAKALTGLFFIRALLVVVGFMWSTRASVVFIKQIISPERKVLAVYPVFFFYAFLSWMVLLQ
Sbjct:    1 MAESPIYDGRLGGAPGNMAYYNTLDEPVSETIMRDLRQVGSKLKIVLMPKGDQEGVLKKLKEWDLWGPLLVCLVLSIMLSSTAPANQGALVFASVFVVVWCGAAMVTVNAQLLGGGISFFQSVCVLGYCVFPLVLASAACLIAKALTGLFFIRALLVVVGFMWSTRASVVFIKQIISPERKVLAVYPVFFFYAFLSWMVLLQ 202
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BLAST of jgi.p|Trimin1|182527 vs. uniprot
Match: D8LN12_ECTSI (Protein YIPF n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN12_ECTSI)

HSP 1 Score: 265 bits (678), Expect = 6.530e-87
Identity = 139/208 (66.83%), Postives = 170/208 (81.73%), Query Frame = 2 
Query:   71 LAMAESPIYDGRLGGAPGN---MAYYNTLDEPVSETIMRDLRQVGSKLKIVLMPKGDQEGVLKKLKEWDLWGPLLVCLVLSIMLSSTAPANQGALVFASVFVVVWCGAAMVTVNAQLLGGGISFFQSVCVLGYCVFPLVLASAACLIAKALTGL-FFIRALLVVVGFMWSTRASVVFIKQIISPERKVLAVYPVFFFYAFLSWMVLLQ 682
            +AMAE   +DG +G         +  NTLDEPVSETIMRDLR VG+KLKIVL P+GDQ+GVL KLK+WDLWGPL+VCL LSI+LS +APA+QGALVFA+VFVVVWCGAA+VT+NAQLLGG ISFFQSVCVLGYCVFPL++++  CLI      +  F+R  +V+VGF+W+TRAS VFI +IIS ERK+LAVYPVFFFY F+SWM+++ 
Sbjct:    5 MAMAE---FDGGIGMQTAERTPQSMMNTLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVVCLILSLFNFMNVFVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVIH 209
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BLAST of jgi.p|Trimin1|182527 vs. uniprot
Match: A0A7S1UDR8_9STRA (Protein YIPF n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UDR8_9STRA)

HSP 1 Score: 257 bits (656), Expect = 8.090e-84
Identity = 130/181 (71.82%), Postives = 155/181 (85.64%), Query Frame = 2 
Query:  143 TLDEPVSETIMRDLRQVGSKLKIVLMPKGDQEGVLKKLKEWDLWGPLLVCLVLSIMLSSTAPANQGALVFASVFVVVWCGAAMVTVNAQLLGGGISFFQSVCVLGYCVFPLVLASAACLIAKAL-TGLFFIRALLVVVGFMWSTRASVVFIKQIISPERKVLAVYPVFFFYAFLSWMVLLQ 682
            TLDEPVSETIMRDLRQV  KLK+VL+P+ DQEGV++KLK+WDLWGPLLVCL LS++LS TAP +Q ALVFASVF V+WCGAA+VT+NAQLLGG ISFFQSVCVLGYCVFPL +A+  C+    +  G   +R ++VV+GF+W+TRASVVFI +II  ERK+LAVYPVFFFY FLSWM+LLQ
Sbjct:   12 TLDEPVSETIMRDLRQVADKLKVVLLPREDQEGVVQKLKDWDLWGPLLVCLTLSLLLSVTAPESQKALVFASVFFVIWCGAAVVTLNAQLLGGTISFFQSVCVLGYCVFPLTIAAIVCVFLSLIGLGHIAVRCIVVVLGFVWATRASVVFIAKIIKAERKILAVYPVFFFYTFLSWMILLQ 192
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BLAST of jgi.p|Trimin1|182527 vs. uniprot
Match: A0A7S2V1N2_9STRA (Protein YIPF n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1N2_9STRA)

HSP 1 Score: 249 bits (636), Expect = 1.120e-80
Identity = 126/181 (69.61%), Postives = 155/181 (85.64%), Query Frame = 2 
Query:  143 TLDEPVSETIMRDLRQVGSKLKIVLMPKGDQEGVLKKLKEWDLWGPLLVCLVLSIMLSSTAPANQGALVFASVFVVVWCGAAMVTVNAQLLGGGISFFQSVCVLGYCVFPLVLASAACLIAKALT-GLFFIRALLVVVGFMWSTRASVVFIKQIISPERKVLAVYPVFFFYAFLSWMVLLQ 682
            TLDEPVSETIMRDL+QV  KLK+VL+P+ +Q+GVL KLKEWDLWGPL+VCL LS++L +TAPA+Q ALVFA+VFVVVW GAA+VT+NAQLLGG ISFFQSVCVLGYCVFPL + +   L+ + L     F++ +LV +GF W+TRASVVFI QIISP+RK+LAVYPVFFFY F+SWM+++Q
Sbjct:   19 TLDEPVSETIMRDLKQVYGKLKVVLLPRENQQGVLHKLKEWDLWGPLMVCLTLSMLLCATAPADQTALVFAAVFVVVWVGAAIVTLNAQLLGGTISFFQSVCVLGYCVFPLTVVALVLLLVRLLIFNNIFVKLVLVAIGFAWATRASVVFIAQIISPQRKILAVYPVFFFYTFISWMIVIQ 199
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BLAST of jgi.p|Trimin1|182527 vs. uniprot
Match: A0A067CCZ0_SAPPC (Protein YIPF n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CCZ0_SAPPC)

HSP 1 Score: 245 bits (626), Expect = 3.230e-79
Identity = 121/181 (66.85%), Postives = 151/181 (83.43%), Query Frame = 2 
Query:  140 NTLDEPVSETIMRDLRQVGSKLKIVLMPKGDQEGVLKKLKEWDLWGPLLVCLVLSIMLSSTAPANQGALVFASVFVVVWCGAAMVTVNAQLLGGGISFFQSVCVLGYCVFPLVLASAACLIAKALTGLFFIRALLVVVGFMWSTRASVVFIKQIISPERKVLAVYPVFFFYAFLSWMVLLQ 682
            NTLDEPVSETI+RD+R VGSKLK+VLMP+   +  L+ L++WDLWGPL+VCL+LSI+LS TAPANQ A+VF SVFVVVW GAA+VTVNAQLLG  ISFFQS+CVLGYCVFPLV+A+ AC + + ++    IR +LV VGF+WSTRASVVF+ Q++ P++K L VYPV  FY F+SWM+L+Q
Sbjct:   15 NTLDEPVSETILRDVRLVGSKLKVVLMPRNTSDETLQALRDWDLWGPLMVCLMLSILLSLTAPANQSAMVFTSVFVVVWVGAAVVTVNAQLLGSTISFFQSICVLGYCVFPLVIATLACFLTRVVSSHVTIRLILVGVGFVWSTRASVVFMSQLVPPKKKALTVYPVLLFYIFISWMILIQ 195
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BLAST of jgi.p|Trimin1|182527 vs. uniprot
Match: A0A1V9Z1I2_9STRA (Protein YIPF n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z1I2_9STRA)

HSP 1 Score: 242 bits (618), Expect = 5.290e-78
Identity = 119/181 (65.75%), Postives = 147/181 (81.22%), Query Frame = 2 
Query:  140 NTLDEPVSETIMRDLRQVGSKLKIVLMPKGDQEGVLKKLKEWDLWGPLLVCLVLSIMLSSTAPANQGALVFASVFVVVWCGAAMVTVNAQLLGGGISFFQSVCVLGYCVFPLVLASAACLIAKALTGLFFIRALLVVVGFMWSTRASVVFIKQIISPERKVLAVYPVFFFYAFLSWMVLLQ 682
            NTLDEPVSETIMRD+R VGSKLK+VL PK   +  L+ L++WDLWGPL+VCL LSIMLS TAP NQ A+VF SVFVVVW GAA+VT+NAQLLG  ISFFQS+CVLGYCVFPLV+A+ AC + + ++    IR + V +GF+WSTRASVVF+ Q++ P++K L VYPV  FY F+SWM+L+Q
Sbjct:   15 NTLDEPVSETIMRDVRLVGSKLKVVLAPKNTSDETLQALRDWDLWGPLMVCLTLSIMLSMTAPTNQSAMVFTSVFVVVWVGAAVVTINAQLLGSTISFFQSICVLGYCVFPLVIATIACFLTRVVSSHVAIRLVFVGIGFIWSTRASVVFMSQLVPPKKKALTVYPVLLFYIFISWMILIQ 195
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BLAST of jgi.p|Trimin1|182527 vs. uniprot
Match: I2CPI6_NANGC (Protein YIPF n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPI6_NANGC)

HSP 1 Score: 243 bits (619), Expect = 5.560e-78
Identity = 126/184 (68.48%), Postives = 156/184 (84.78%), Query Frame = 2 
Query:  143 TLDEPVSETIMRDLRQVGSKLKIVLMPKGDQEGVLKKLKEWDLWGPLLVCLVLSIMLSSTAPANQGALVFASVFVVVWCGAAMVTVNAQLLGGGISFFQSVCVLGYCVFPLVLASAACLIAKALTGLFF----IRALLVVVGFMWSTRASVVFIKQIISPERKVLAVYPVFFFYAFLSWMVLLQ 682
            TLDEPV +T+ RDL QVGSKL++VL+P+ +Q+GVLKKLK+WDLWGPLLVCL LSI+LS TAP  QGALVFA+VF VVW GAA+VT+NAQLLGG ISFFQS+C+LGYCVFPL +A+    +A  L GL F    ++A++V VGF W+TRASVVFI Q+I+PERKVLA++PVFFFY FL+W+VL+Q
Sbjct:   28 TLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTISFFQSLCILGYCVFPLDIAA----LANLLIGLAFQSLVVKAVVVAVGFAWATRASVVFIGQVIAPERKVLALFPVFFFYTFLAWLVLIQ 207
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BLAST of jgi.p|Trimin1|182527 vs. uniprot
Match: A0A3M6VR98_9STRA (Protein YIPF n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VR98_9STRA)

HSP 1 Score: 234 bits (596), Expect = 1.770e-74
Identity = 116/181 (64.09%), Postives = 144/181 (79.56%), Query Frame = 2 
Query:  140 NTLDEPVSETIMRDLRQVGSKLKIVLMPKGDQEGVLKKLKEWDLWGPLLVCLVLSIMLSSTAPANQGALVFASVFVVVWCGAAMVTVNAQLLGGGISFFQSVCVLGYCVFPLVLASAACLIAKALTGLFFIRALLVVVGFMWSTRASVVFIKQIISPERKVLAVYPVFFFYAFLSWMVLLQ 682
            +TLDEPVS TI+RDLR VG KL++VLMP    E  LK L++WDLWGPLL+CL LSI LS TAPA Q A+VF  VF+V+W GAA+VT+NAQLLG  ISFFQSVCVLGYCVFPL +A+  C+++K +     +RA++V VGF+WSTRASVVF+ +++ P+RK L VYPV  FY FLSWMVL+Q
Sbjct:   28 STLDEPVSITILRDLRLVGGKLRVVLMPSNTSEETLKALRDWDLWGPLLLCLTLSITLSVTAPAAQSAMVFTGVFIVIWVGAAIVTINAQLLGSSISFFQSVCVLGYCVFPLNIATLVCMLSKVVVSHILLRAVIVGVGFLWSTRASVVFMSKMVPPKRKALTVYPVLLFYIFLSWMVLIQ 208
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BLAST of jgi.p|Trimin1|182527 vs. uniprot
Match: A0A0P1ABD2_PLAHL (Protein YIPF n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ABD2_PLAHL)

HSP 1 Score: 233 bits (593), Expect = 4.900e-74
Identity = 114/181 (62.98%), Postives = 142/181 (78.45%), Query Frame = 2 
Query:  140 NTLDEPVSETIMRDLRQVGSKLKIVLMPKGDQEGVLKKLKEWDLWGPLLVCLVLSIMLSSTAPANQGALVFASVFVVVWCGAAMVTVNAQLLGGGISFFQSVCVLGYCVFPLVLASAACLIAKALTGLFFIRALLVVVGFMWSTRASVVFIKQIISPERKVLAVYPVFFFYAFLSWMVLLQ 682
            NTLDEPVS TI+RDLR VG KL++VLMP    E  LK L++WDLWGPLL+CL LSIMLS TAP +Q A+VF  VF+VVW GAA+VT+NAQLLG  ISFFQSVCVLGYCVFPL +A+  C++ K +     +R ++V +GF+WSTRASVVF+ +++ P+RK L VYPV  FY  +SWMVL+Q
Sbjct:   27 NTLDEPVSTTILRDLRLVGGKLRVVLMPSNTSEETLKALRDWDLWGPLLLCLTLSIMLSITAPVSQSAMVFTGVFIVVWVGAAVVTINAQLLGSAISFFQSVCVLGYCVFPLNIATLMCMLTKVVVPHILLRMVIVSIGFLWSTRASVVFMSKLVPPKRKALTVYPVLLFYLLISWMVLIQ 207
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BLAST of jgi.p|Trimin1|182527 vs. uniprot
Match: M4BIG2_HYAAE (Protein YIPF n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BIG2_HYAAE)

HSP 1 Score: 233 bits (593), Expect = 4.900e-74
Identity = 116/181 (64.09%), Postives = 141/181 (77.90%), Query Frame = 2 
Query:  140 NTLDEPVSETIMRDLRQVGSKLKIVLMPKGDQEGVLKKLKEWDLWGPLLVCLVLSIMLSSTAPANQGALVFASVFVVVWCGAAMVTVNAQLLGGGISFFQSVCVLGYCVFPLVLASAACLIAKALTGLFFIRALLVVVGFMWSTRASVVFIKQIISPERKVLAVYPVFFFYAFLSWMVLLQ 682
            NTLDEPVS+TI+RDLR VG KL++VLMP    E  LK L++WDLWGPLL+CL LSIMLS TAPA Q A+VF  VFVV+W GAA+VTVNAQLLG  ISFFQSVCVLGYCVFPL +A+  C++ +       +R  +V VGF+WSTRASVVF+ +++ P+RK L VYPV  FY  +SWMVL+Q
Sbjct:   27 NTLDEPVSDTILRDLRLVGGKLRVVLMPSNTSEETLKALRDWDLWGPLLLCLTLSIMLSVTAPAAQSAMVFTGVFVVIWMGAAIVTVNAQLLGSSISFFQSVCVLGYCVFPLNIATLVCMLTRVAISHILLRVFVVGVGFLWSTRASVVFMSKLVPPKRKALTVYPVLLFYLVISWMVLIQ 207
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|182527 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CPM4_9STRA1.430e-135100.00Protein YIPF n=1 Tax=Tribonema minus TaxID=303371 ... [more]
D8LN12_ECTSI6.530e-8766.83Protein YIPF n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A7S1UDR8_9STRA8.090e-8471.82Protein YIPF n=1 Tax=Phaeomonas parva TaxID=124430... [more]
A0A7S2V1N2_9STRA1.120e-8069.61Protein YIPF n=1 Tax=Fibrocapsa japonica TaxID=946... [more]
A0A067CCZ0_SAPPC3.230e-7966.85Protein YIPF n=3 Tax=Saprolegniaceae TaxID=4764 Re... [more]
A0A1V9Z1I2_9STRA5.290e-7865.75Protein YIPF n=1 Tax=Thraustotheca clavata TaxID=7... [more]
I2CPI6_NANGC5.560e-7868.48Protein YIPF n=1 Tax=Nannochloropsis gaditana (str... [more]
A0A3M6VR98_9STRA1.770e-7464.09Protein YIPF n=1 Tax=Peronospora effusa TaxID=5428... [more]
A0A0P1ABD2_PLAHL4.900e-7462.98Protein YIPF n=1 Tax=Plasmopara halstedii TaxID=47... [more]
M4BIG2_HYAAE4.900e-7464.09Protein YIPF n=1 Tax=Hyaloperonospora arabidopsidi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_1contigContig_1:347417..351164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|182527|estExt_Genewise1.C_Ctg_10084
GOsGO:0000138,GO:0002064,GO:0002065,GO:0002066,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005795,GO:0005797,GO:0005798,GO:0005801,GO:0005802,GO:0007275,GO:0008150,GO:0009888,GO:0009987,GO:0012505,GO:0030134,GO:0030135,GO:0030154,GO:0030855,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0035295,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0048468,GO:0048565,GO:0048731,GO:0048856,GO:0048869,GO:0055123,GO:0060429,GO:0060575,GO:0060576,GO:0097708,GO:0098791
Preferred nameYIPF6
Descriptionintestinal epithelial cell development
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5080@1|root,KOG2946@2759|Eukaryota
Evalue2.13e-86
Seed ortholog2880.D8LN12
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionterbinafine resistance locus protein (yip1)
Ec32 orthologEc-27_000980.1
TranscriptId182849
TrackFilteredModels1
ProteinId182527
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|182527gene_973Tribonema minus UTEX_B_3156 geneContig_1 347417..351164 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|182527Trimin1|182527|estExt_Genewise1.C_Ctg_10084Tribonema minus UTEX_B_3156 polypeptideContig_1 347467..351088 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_973_4exon_973_4Tribonema minus UTEX_B_3156 exonContig_1 347417..347576 -
exon_973_3exon_973_3Tribonema minus UTEX_B_3156 exonContig_1 348620..348941 -
exon_973_2exon_973_2Tribonema minus UTEX_B_3156 exonContig_1 350033..350175 -
exon_973_1exon_973_1Tribonema minus UTEX_B_3156 exonContig_1 351055..351164 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_973UTR3_973Tribonema minus UTEX_B_3156 three_prime_UTRContig_1 347417..347466 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_973CDS_973Tribonema minus UTEX_B_3156 CDSContig_1 351055..351088 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_973UTR5_973Tribonema minus UTEX_B_3156 five_prime_UTRContig_1 351089..351164 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_973 ID=mRNA_973|Name=jgi.p|Trimin1|182527|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=735bp|location=Sequence derived from alignment at Contig_1:347417..351164- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGAAGAGAGGCTTTCGACGCCCAGGAGGAGGGAAGCTAGGACATTCGCTG
CCGGTGTCTGGCGGAGATAGCTTGCCATGGCGGAATCTCCGATATATGAT
GGCCGATTGGGTGGAGCTCCCGGTAACATGGCGTACTACAATACTCTGGA
TGAGCCAGTAAGCGAGACCATTATGCGGGACCTTAGGCAAGTGGGCAGCA
AGCTGAAAATAGTGCTGATGCCCAAAGGCGACCAGGAAGGAGTGCTCAAA
AAGCTGAAGGAGTGGGACCTCTGGGGGCCTCTGCTGGTCTGCCTGGTCCT
CTCTATCATGCTCAGCTCCACGGCGCCCGCCAACCAGGGCGCGCTCGTCT
TTGCGTCGGTGTTTGTCGTCGTGTGGTGCGGGGCGGCCATGGTAACTGTA
AACGCGCAACTGCTGGGCGGGGGCATCTCCTTCTTCCAGAGCGTGTGCGT
GCTGGGGTACTGCGTGTTCCCGCTGGTGCTGGCGAGCGCGGCGTGCCTCA
TTGCCAAGGCGCTCACGGGGCTGTTCTTCATACGCGCGCTGCTCGTGGTC
GTGGGCTTCATGTGGTCCACACGAGCGTCGGTGGTATTCATCAAGCAGAT
CATCTCTCCGGAGCGCAAGGTGCTGGCGGTGTACCCCGTCTTCTTCTTCT
ACGCATTCCTCAGCTGGATGGTGCTGCTGCAATGACCCTACAGCAGCGGA
CCACGCCTTAATGTATAGTGTACATGCGTCAATTA
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protein sequence of jgi.p|Trimin1|182527

>Trimin1|182527|estExt_Genewise1.C_Ctg_10084 ID=Trimin1|182527|estExt_Genewise1.C_Ctg_10084|Name=jgi.p|Trimin1|182527|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=203bp
MAESPIYDGRLGGAPGNMAYYNTLDEPVSETIMRDLRQVGSKLKIVLMPK
GDQEGVLKKLKEWDLWGPLLVCLVLSIMLSSTAPANQGALVFASVFVVVW
CGAAMVTVNAQLLGGGISFFQSVCVLGYCVFPLVLASAACLIAKALTGLF
FIRALLVVVGFMWSTRASVVFIKQIISPERKVLAVYPVFFFYAFLSWMVL
LQ*
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mRNA from alignment at Contig_1:347417..351164-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_973 ID=mRNA_973|Name=jgi.p|Trimin1|182527|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3748bp|location=Sequence derived from alignment at Contig_1:347417..351164- (Tribonema minus UTEX_B_3156 )
GGAAGAGAGGCTTTCGACGCCCAGGAGGAGGGAAGCTAGGACATTCGCTG
CCGGTGTCTGGCGGAGATAGCTTGCCATGGCGGAATCTCCGATATATGAT
GGCCGATTGGGTGCGTCAACACTACCCTACAATTACGGTTTCAGAGAAGC
TCGCACCTGAGTAAGAGCATCTCCACCGGTGCCTTCTTCTTGGCCGTCCA
ACAGCGGCTCGTGGCAGTCAAAGGCTAGCCACTTAATTGACGTGTCCAGC
TAAAATCTTGCTGGCCGAGTATCGCCACACCGGCAGCATCAAGCCTGGCT
CATTTGCAACCCTTTCGTAAAATCCACCACCAGCTGGCGTCGTTGTGCTT
GCGCTGTGCGTGCGCTGTGCAGCTGCTTTGTTGCGTGCAGCGCACGCACC
ATAAAGTCTTGAAGCATGCACGTTGCTCGCGTGAAAACAGGTGCAAGCAC
ACTCATGGTGCTAGCTACTGCAGCTGCCAACGCGCACGCGCGATGTGTGC
TGCGACAACGCTGTTGTTTTGCTATCGAATGATGTGCATGGCTATGAGAA
GCTGTACGCACAAGCTCTAGGTTGCGTAGTATTCGTTGTGCAATGCATGG
CGGTGATATGCAAAAACCATGCGTCATCGACTGCCGCATCCCATATGCGA
GCTATAGTCGCCTCCAATCTCGCCTCCTATCTTGGACGGCTAGATTGTCG
AGCAGGTATGACATCACCCCTCTAGCCGCCTAAGATTGCTGCCGGTGCGG
GGCGACGCCGCCCAACAGCAACTGTTGAGTTTCAAGCGTTGGCCTAGCCG
CATAAGAAAGGCACCGGTGGAGACGCTCTAAACGACAGACAGACTGCCGT
TGGTATCTGCCAGTAGCTGCGGCATCTAGCGGCGTTCGAAAGTCTCACTC
AAGTCAATGATTCTGGCGCAAGAGATCGACTTGCTGCGACAGTGCACACC
TGTCGCTTGTGTTGACAACCGTGTCCGCTCTCTCTGCAGGTGGAGCTCCC
GGTAACATGGCGTACTACAATACTCTGGATGAGCCAGTAAGCGAGACCAT
TATGCGGGACCTTAGGCAAGTGGGCAGCAAGCTGAAAATAGTGCTGATGC
CCAAAGGCGACCAGGAAGGAGTGCTCAAAAAGGTCAGTCCGGTGCGACAG
TCCGCTCAACGAAGAACTTTGGTGTCTTCATACGGTATACTTGCGTGTCT
TGTGCGCTTGCGCAATGTGGCATGGCTCATGCACACGCGATACAGGATGG
ATCGCCATCAAGGCGCTGGTGTGCTACTACCTATAGACTACCTGCAACAA
TGCTAGAGAAGGCATTGGACTCGAATTTAGAACGGTAGCATGACATTGTT
CAAAGGACTTCAGTGTTGGAACTGCAGAGCTATGCAGGTTGGCCTAATAT
AGTTGAACATCATATAGTTGAACATCAAATCTGCGAAAGCAGCACAGTCA
TCGCCAGTCCATCAGCTTCCCAGTGCTTCAGCTGCGACTGCGCATGTGGC
AACTGCGTTGCGAAGAGTGGAAACTCAAGCCTCAAACTCAGTGGTAGTGA
CATGCAGTTGAGGTTGCAGGTGCAGTTCTAACGCTGAAGCTATCACGTTT
ATCGCATATGACGGATTTTCTAATGACACCAGCAACGCTTCAACTTCGAT
CAAACATCAGGTGCTATGTAAAATGTGGAAATTTTGGGCGGCACAGTCAT
CCTCTGCATCCGTGGTGCTCCCCTGCACAGCCGCCTCCATGCCTCAACTC
TTCAGCTTTATCAGACAATGCGGCTGATTCTCCTCAAATGGTGACTTGCC
TATCCCATAATCAACAATTGAACGAGTGCAGCGCCATTTTCTTATCTTCT
CAGCAGACCTGACAGGCTGACACGGGTGACACTCCTCAACTTGTGACTTG
CCTCCCTCTTCGTGCTCAACAGTGGAACAACTGGGTGCCGCTGCTGGTGT
GCCTGGTCCTCTCCATCATGCTTGTGTCCCCTGCACAGCAGCCGCATGTC
ACTGATCTCTCCAGCATGTCCGCCACACATGGCTCATCCTCCTCCGCAAC
TATGACTTGCGTCCCCCCCCTTCTGGCAACAGCTGAAGGAGTGGGACCTC
TTGGGGCCGCTGTTGGTGTGCCTGATCCTTTACGCCATGCTCATATCCCC
TGCACAGCAGTTGCCTTTAGCATCAAACATGGCTCATCCTTCTGACTTGC
CTCCCCCCCGTTCTATTCGACAGCTGAAGGAGTGGGACCTCTGGGGGCCT
CTGCTGGTCTGCCTGGTCCTCTCTATCATGCTCAGCTCCACGGCGCCCGC
CAACCAGGGCGCGCTCGTCTTTGCGTCGGTGTTTGTCGTCGTGTGGTGCG
GGGCGGCCATGGTAACTGTAAACGCGCAACTGCTGGGCGGGGGCATCTCC
TTCTTCCAGAGCGTGTGCGTGCTGGGGTACTGCGTGTTCCCGCTGGTGCT
GGCGAGCGCGGCGTGCCTCATTGCCAAGGCGCTCACGGGGCTGTTCTTCA
TACGCGCGCTGCTCGTGGTCGTGGGCTTCATGTGGTCCACACGAGGTGAG
AACTTCACTTGAATCTAAGAGCTTCACTTGAAGTTGAACTGTGCCGGTGG
CGGCGGCGCCCCGGCCCGCCCCCACCAGGTGGAATCTTTACTTGAAGTTG
AAATTCTCAACTGACTTTCAATGAAGTAGGTGTTTGCAATGCAAGCACGG
TGGGGAAGTATAGCGGCGTTTGCCATGTCACCTGCGCGAATGAACTATTG
ATTGTAGCCGGGGTAGATTGTAGACATTGGAGACAGGCATCTGAGCCAAC
TCGGCGTGCTCCACCGCCAAGTGCAGGCGATGTTAGCGAATAGCATGTGT
TGTAGCATTTGCTATGCTTCAAGCCGTTGCAGTATCCACAGGAGTGATGG
GTGTAATGCCCCCAGTCTGACATGCTTCCATGCATTCGCAAAGCTATTTC
CTCTGTCTGGCGATTCCATGTGTATCTTGCGTGTTTGAGTGTGGGGCTGA
CTGGTGCTCTGAATTTGTGATGGTGGGGGATGTTTGGACAGATCAGACGC
CTGTACATAGCAGCTGTGAATCAGGGCGATCTCGCAGCAAGGATCTCATT
GGTGGGAAGCTTGCTGACGTGGTAGGCATGTCGGCTAATGGTCTAGCTCT
GAAAGTAGTGCGGTTTTACTGTATTGTTGAGGTACTGTCTTCAGGGCAGC
CACCATGTTGAAGTACTGTACATCAACTTTAGGCTATGTGCAGCAGCACA
GCACAGTCGAAGATGCGCTATGTCTGCAGAGCCGCAGGACGCTGACCTGC
GTCTGTCCAATTGTGATGTGTTTCTACCGCCATGCTTTTCACCCCTAGTA
TTCACACGTCGACAAGAAGGAGGGCGCAGGGTAACACATGCACTGACTTG
CTGTTCATGAATCTTTGTGCTTCCGTGACTTTTCTGCCTACGATCAAAGC
CAAGTCCAGATGTATTGACTCTGAGTGAGTGCACGCACAGATAGCCAATA
GCCACAAAAGAGAGCATGAATTCACCACCAATTACAGCCAGACTGATGAC
TGACAGCCTTGCACTGCCTTCCACTGCCGTCCCTGCAGCGTCGGTGGTAT
TCATCAAGCAGATCATCTCTCCGGAGCGCAAGGTGCTGGCGGTGTACCCC
GTCTTCTTCTTCTACGCATTCCTCAGCTGGATGGTGCTGCTGCAATGACC
CTACAGCAGCGGACCACGCCTTAATGTATAGTGTACATGCGTCAATTA
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Coding sequence (CDS) from alignment at Contig_1:347417..351164-

>mRNA_973 ID=mRNA_973|Name=jgi.p|Trimin1|182527|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=609bp|location=Sequence derived from alignment at Contig_1:347417..351164- (Tribonema minus UTEX_B_3156 )
ATGGCGGAATCTCCGATATATGATGGCCGATTGGGTGGAGCTCCCGGTAA
CATGGCGTACTACAATACTCTGGATGAGCCAGTAAGCGAGACCATTATGC
GGGACCTTAGGCAAGTGGGCAGCAAGCTGAAAATAGTGCTGATGCCCAAA
GGCGACCAGGAAGGAGTGCTCAAAAAGCTGAAGGAGTGGGACCTCTGGGG
GCCTCTGCTGGTCTGCCTGGTCCTCTCTATCATGCTCAGCTCCACGGCGC
CCGCCAACCAGGGCGCGCTCGTCTTTGCGTCGGTGTTTGTCGTCGTGTGG
TGCGGGGCGGCCATGGTAACTGTAAACGCGCAACTGCTGGGCGGGGGCAT
CTCCTTCTTCCAGAGCGTGTGCGTGCTGGGGTACTGCGTGTTCCCGCTGG
TGCTGGCGAGCGCGGCGTGCCTCATTGCCAAGGCGCTCACGGGGCTGTTC
TTCATACGCGCGCTGCTCGTGGTCGTGGGCTTCATGTGGTCCACACGAGC
GTCGGTGGTATTCATCAAGCAGATCATCTCTCCGGAGCGCAAGGTGCTGG
CGGTGTACCCCGTCTTCTTCTTCTACGCATTCCTCAGCTGGATGGTGCTG
CTGCAATGA
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