mRNA_9659 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154969
Unique NamemRNA_9659
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|154969 vs. uniprot
Match: A0A835YN12_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN12_9STRA)

HSP 1 Score: 141 bits (355), Expect = 7.540e-43
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 CSREGCRRRPSYNFPGRKAAYCHNHKAQGMINTISKRCAAIGCTKQPLAGVKGIGKSRFCRLH 189
            CSREGCRRRPSYNFPGRKAAYCHNHKAQGMINTISKRCAAIGCTKQPLAGVKGIGKSRFCRLH
Sbjct:    1 CSREGCRRRPSYNFPGRKAAYCHNHKAQGMINTISKRCAAIGCTKQPLAGVKGIGKSRFCRLH 63
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BLAST of jgi.p|Trimin1|154969 vs. uniprot
Match: A0A836C8S2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8S2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.210e-10
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 CSREGCRRRPSYNFPGRKAAYCHNHKAQGMINTISKR 111
            C+  GCRRRPSYN+ GR+AAYCH HKA+GM N +S+R
Sbjct:  134 CAASGCRRRPSYNYDGRRAAYCHKHKAEGMTNQVSRR 170
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154969 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YN12_9STRA7.540e-43100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836C8S2_9STRA1.210e-1067.57Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_66contigContig_66:211787..211975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154969|gw1.66.146.1
Max annot lvl2880.D7FHY3|-
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Evalue5.44e-06
Seed ortholog2880.D7FHY3
Hectar predicted targeting categoryother localisation
TranscriptId155291
TrackFilteredModels1
ProteinId154969
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154969gene_9659Tribonema minus UTEX_B_3156 geneContig_66 211787..211975 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9659_1exon_9659_1Tribonema minus UTEX_B_3156 exonContig_66 211787..211975 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9659CDS_9659Tribonema minus UTEX_B_3156 CDSContig_66 211787..211975 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154969Trimin1|154969|gw1.66.146.1Tribonema minus UTEX_B_3156 polypeptideContig_66 211787..211975 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9659 ID=mRNA_9659|Name=jgi.p|Trimin1|154969|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=189bp|location=Sequence derived from alignment at Contig_66:211787..211975+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCAGCCGGGAGGGCTGCAGGAGGAGGCCTTCGTACAACTTCCCGGGTCG
CAAGGCGGCCTATTGCCACAACCACAAGGCGCAGGGCATGATCAACACAA
TCTCCAAGCGCTGCGCTGCTATTGGCTGCACGAAGCAGCCTCTGGCAGGA
GTCAAGGGCATCGGCAAGAGCCGGTTTTGCAGGCTGCAC
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protein sequence of jgi.p|Trimin1|154969

>Trimin1|154969|gw1.66.146.1 ID=Trimin1|154969|gw1.66.146.1|Name=jgi.p|Trimin1|154969|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=63bp
CSREGCRRRPSYNFPGRKAAYCHNHKAQGMINTISKRCAAIGCTKQPLAG
VKGIGKSRFCRLH
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mRNA from alignment at Contig_66:211787..211975+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9659 ID=mRNA_9659|Name=jgi.p|Trimin1|154969|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=189bp|location=Sequence derived from alignment at Contig_66:211787..211975+ (Tribonema minus UTEX_B_3156 )
TGCAGCCGGGAGGGCTGCAGGAGGAGGCCTTCGTACAACTTCCCGGGTCG
CAAGGCGGCCTATTGCCACAACCACAAGGCGCAGGGCATGATCAACACAA
TCTCCAAGCGCTGCGCTGCTATTGGCTGCACGAAGCAGCCTCTGGCAGGA
GTCAAGGGCATCGGCAAGAGCCGGTTTTGCAGGCTGCAC
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Coding sequence (CDS) from alignment at Contig_66:211787..211975+

>mRNA_9659 ID=mRNA_9659|Name=jgi.p|Trimin1|154969|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=189bp|location=Sequence derived from alignment at Contig_66:211787..211975+ (Tribonema minus UTEX_B_3156 )
TGCAGCCGGGAGGGCTGCAGGAGGAGGCCTTCGTACAACTTCCCGGGTCG
CAAGGCGGCCTATTGCCACAACCACAAGGCGCAGGGCATGATCAACACAA
TCTCCAAGCGCTGCGCTGCTATTGGCTGCACGAAGCAGCCTCTGGCAGGA
GTCAAGGGCATCGGCAAGAGCCGGTTTTGCAGGCTGCAC
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