mRNA_9630 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|140740
Unique NamemRNA_9630
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|140740 vs. uniprot
Match: A0A835Z0L3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0L3_9STRA)

HSP 1 Score: 362 bits (930), Expect = 1.290e-126
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1 
Query:    1 DWYNAAMTGYVWRHRYWLRQALRQSVAQWPHAQQRSTXXXXXXXXXCAALHVRRSDVKLETGQRAPAGFHHVSEYLLRGRAMLEALGIRRIVLLTDSADAVKEAKEVGDYEWEWLDKARYADDSDNIQFSFPFPSGDPTLETLQLLTELEVVKQCSMLITDEGGNFAHLLYTSMCGRDADSWSCPP 558
            DWYNAAMTGYVWRHRYWLRQALRQSVAQWPHAQQRSTXXXXXXXXXCAALHVRRSDVKLETGQRAPAGFHHVSEYLLRGRAMLEALGIRRIVLLTDSADAVKEAKEVGDYEWEWLDKARYADDSDNIQFSFPFPSGDPTLETLQLLTELEVVKQCSMLITDEGGNFAHLLYTSMCGRDADSWSCPP
Sbjct:    1 DWYNAAMTGYVWRHRYWLRQALRQSVAQWPHAQQRSTXXXXXXXXXCAALHVRRSDVKLETGQRAPAGFHHVSEYLLRGRAMLEALGIRRIVLLTDSADAVKEAKEVGDYEWEWLDKARYADDSDNIQFSFPFPSGDPTLETLQLLTELEVVKQCSMLITDEGGNFAHLLYTSMCGRDADSWSCPP 186
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|140740 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z0L3_9STRA1.290e-126100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_29contigContig_29:1101721..1102278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|140740|gw1.29.58.1
Hectar predicted targeting categoryother localisation
TranscriptId141062
TrackFilteredModels1
ProteinId140740
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140740gene_9630Tribonema minus UTEX_B_3156 geneContig_29 1101721..1102278 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9630_1exon_9630_1Tribonema minus UTEX_B_3156 exonContig_29 1101721..1102278 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9630CDS_9630Tribonema minus UTEX_B_3156 CDSContig_29 1101721..1102278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140740Trimin1|140740|gw1.29.58.1Tribonema minus UTEX_B_3156 polypeptideContig_29 1101721..1102278 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9630 ID=mRNA_9630|Name=jgi.p|Trimin1|140740|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=558bp|location=Sequence derived from alignment at Contig_29:1101721..1102278+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GACTGGTACAACGCCGCCATGACGGGCTACGTGTGGCGCCACCGCTACTG
GCTGCGCCAGGCGCTGCGCCAGAGCGTGGCGCAGTGGCCGCATGCGCAGC
AGCGCTCAACGCCGCATGCGCAGCAGCGCTCAACGCCGTGCGCGGCGCTG
CACGTGCGCCGCTCGGACGTCAAGCTCGAGACCGGGCAGCGCGCGCCTGC
GGGGTTCCACCACGTGAGCGAGTACCTGCTGCGCGGGAGGGCCATGCTGG
AGGCGCTCGGCATACGGCGCATCGTGCTGCTGACGGACAGCGCCGACGCC
GTGAAGGAGGCTAAGGAGGTGGGGGACTACGAGTGGGAGTGGCTCGACAA
GGCGCGCTACGCCGACGACAGCGACAACATCCAGTTCTCCTTCCCTTTCC
CCTCGGGGGACCCGACGCTGGAGACGCTCCAGCTGCTCACTGAACTTGAA
GTTGTGAAGCAGTGCAGCATGCTCATCACGGATGAGGGAGGCAACTTTGC
GCACCTTCTGTACACGTCCATGTGTGGCAGAGATGCCGACTCTTGGAGCT
GTCCACCA
back to top

protein sequence of jgi.p|Trimin1|140740

>Trimin1|140740|gw1.29.58.1 ID=Trimin1|140740|gw1.29.58.1|Name=jgi.p|Trimin1|140740|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=186bp
DWYNAAMTGYVWRHRYWLRQALRQSVAQWPHAQQRSTPHAQQRSTPCAAL
HVRRSDVKLETGQRAPAGFHHVSEYLLRGRAMLEALGIRRIVLLTDSADA
VKEAKEVGDYEWEWLDKARYADDSDNIQFSFPFPSGDPTLETLQLLTELE
VVKQCSMLITDEGGNFAHLLYTSMCGRDADSWSCPP
back to top

mRNA from alignment at Contig_29:1101721..1102278+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9630 ID=mRNA_9630|Name=jgi.p|Trimin1|140740|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=558bp|location=Sequence derived from alignment at Contig_29:1101721..1102278+ (Tribonema minus UTEX_B_3156 )
GACTGGTACAACGCCGCCATGACGGGCTACGTGTGGCGCCACCGCTACTG
GCTGCGCCAGGCGCTGCGCCAGAGCGTGGCGCAGTGGCCGCATGCGCAGC
AGCGCTCAACGCCGCATGCGCAGCAGCGCTCAACGCCGTGCGCGGCGCTG
CACGTGCGCCGCTCGGACGTCAAGCTCGAGACCGGGCAGCGCGCGCCTGC
GGGGTTCCACCACGTGAGCGAGTACCTGCTGCGCGGGAGGGCCATGCTGG
AGGCGCTCGGCATACGGCGCATCGTGCTGCTGACGGACAGCGCCGACGCC
GTGAAGGAGGCTAAGGAGGTGGGGGACTACGAGTGGGAGTGGCTCGACAA
GGCGCGCTACGCCGACGACAGCGACAACATCCAGTTCTCCTTCCCTTTCC
CCTCGGGGGACCCGACGCTGGAGACGCTCCAGCTGCTCACTGAACTTGAA
GTTGTGAAGCAGTGCAGCATGCTCATCACGGATGAGGGAGGCAACTTTGC
GCACCTTCTGTACACGTCCATGTGTGGCAGAGATGCCGACTCTTGGAGCT
GTCCACCA
back to top

Coding sequence (CDS) from alignment at Contig_29:1101721..1102278+

>mRNA_9630 ID=mRNA_9630|Name=jgi.p|Trimin1|140740|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=558bp|location=Sequence derived from alignment at Contig_29:1101721..1102278+ (Tribonema minus UTEX_B_3156 )
GACTGGTACAACGCCGCCATGACGGGCTACGTGTGGCGCCACCGCTACTG
GCTGCGCCAGGCGCTGCGCCAGAGCGTGGCGCAGTGGCCGCATGCGCAGC
AGCGCTCAACGCCGCATGCGCAGCAGCGCTCAACGCCGTGCGCGGCGCTG
CACGTGCGCCGCTCGGACGTCAAGCTCGAGACCGGGCAGCGCGCGCCTGC
GGGGTTCCACCACGTGAGCGAGTACCTGCTGCGCGGGAGGGCCATGCTGG
AGGCGCTCGGCATACGGCGCATCGTGCTGCTGACGGACAGCGCCGACGCC
GTGAAGGAGGCTAAGGAGGTGGGGGACTACGAGTGGGAGTGGCTCGACAA
GGCGCGCTACGCCGACGACAGCGACAACATCCAGTTCTCCTTCCCTTTCC
CCTCGGGGGACCCGACGCTGGAGACGCTCCAGCTGCTCACTGAACTTGAA
GTTGTGAAGCAGTGCAGCATGCTCATCACGGATGAGGGAGGCAACTTTGC
GCACCTTCTGTACACGTCCATGTGTGGCAGAGATGCCGACTCTTGGAGCT
GTCCACCA
back to top