mRNA_9590 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164053
Unique NamemRNA_9590
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|164053 vs. uniprot
Match: A0A835YXV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXV8_9STRA)

HSP 1 Score: 585 bits (1509), Expect = 4.830e-212
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 1
Query:    1 MVHDYSAGILALCAVMRDQRADIREWVDYHYLYGVDKFYIFDDDSKDPALDILQDYISNGVVHYIEHAKEFLGVEHPLQPGFDYCIKEWGPLHKWMGFIDIDEFILRPGISIPDVLERYAASAAVALNWKVFGSSGFEMRPGGVAHYTKCTPPEAYPSYFVKCIVQPRHTIRSLCVGHEFEYHPGGRVAVNVEGNSTTLKRSWSIPPAYSYLYINHYQVKSKQEFFEMKIPRGTGDGNSGPNEEYFQHIEAAATADCMPLQWPRPRTVGGG 813
            MVHDYSAGILALCAVMRDQRADIREWVDYHYLYGVDKFYIFDDDSKDPALDILQDYISNGVVHYIEHAKEFLGVEHPLQPGFDYCIKEWGPLHKWMGFIDIDEFILRPGISIPDVLERYAASAAVALNWKVFGSSGFEMRPGGVAHYTKCTPPEAYPSYFVKCIVQPRHTIRSLCVGHEFEYHPGGRVAVNVEGNSTTLKRSWSIPPAYSYLYINHYQVKSKQEFFEMKIPRGTGDGNSGPNEEYFQHIEAAATADCMPLQWPRPRTVGGG
Sbjct:    1 MVHDYSAGILALCAVMRDQRADIREWVDYHYLYGVDKFYIFDDDSKDPALDILQDYISNGVVHYIEHAKEFLGVEHPLQPGFDYCIKEWGPLHKWMGFIDIDEFILRPGISIPDVLERYAASAAVALNWKVFGSSGFEMRPGGVAHYTKCTPPEAYPSYFVKCIVQPRHTIRSLCVGHEFEYHPGGRVAVNVEGNSTTLKRSWSIPPAYSYLYINHYQVKSKQEFFEMKIPRGTGDGNSGPNEEYFQHIEAAATADCMPLQWPRPRTVGGG 271          
BLAST of jgi.p|Trimin1|164053 vs. uniprot
Match: A0A059LLJ4_9CHLO (Glycosyltransferase family 92 protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LLJ4_9CHLO)

HSP 1 Score: 145 bits (367), Expect = 1.070e-37
Identity = 85/257 (33.07%), Postives = 135/257 (52.53%), Query Frame = 1
Query:   19 AGILALCAVMRDQRADIREWVDYHYLYGVDKFYIFDDDSKDPALDILQDYISNGVVHYIEHAK--EFLGVEHPLQPGFDYCIKEWGPLHKWMGFIDIDEFILRPGIS--IPDVLERYAASAAVALNWKVFGSSGFEMRP--GGVAHYTKCTPPEAYPSYFVKCIVQPRHTIRSLCVGHEFEYHPGGRVAVNVEGNSTTLKRSWSIPPAYSYLYINHYQVKSKQEFFEMKIPRGTGDGNSGPNEEYFQHIEAAATADC 771
            A  + +C+ ++DQ AD+REW+ YH   GV++FY+ D  S  P   +L D+I +G+VHY   A      G   P    ++ C++     H WM FID+DEF++    +   P +L  +  + A+ LNW VFGSSG E +P    +A Y +C P     +  VK +V+P     +    H F+Y     VA +  G   T+    S   A + + ++HY +KS++EF   K+ RG+G GN      +F +++   TA+C
Sbjct:  108 AAFVTICSAVKDQHADVREWIVYHRAIGVERFYLHDTGSVPPMDTVLPDFIESGLVHYRYDAATPHRAGTHGPQITVYERCLESGRVAHPWMAFIDVDEFVVLRDATPDFPTLLREFEDAGALVLNWVVFGSSGLEKKPRTNTLASYWQCAPDGHPENLHVKSVVRPARVNDTRTDPHHFKYR-APYVAKSAGGE--TVAGPKSSRQATARVALHHYAIKSREEF-GAKMARGSGMGNQ-KTMAFFHYVDNYTTANC 359          
BLAST of jgi.p|Trimin1|164053 vs. uniprot
Match: A0A8J9RE21_9CHLO (Probable glycosyltransferase family 92 protein RCOM_0530710 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RE21_9CHLO)

HSP 1 Score: 143 bits (360), Expect = 8.330e-37
Identity = 90/258 (34.88%), Postives = 138/258 (53.49%), Query Frame = 1
Query:   28 LALCAVMRDQRADIREWVDYHYLYGVDKFYIFDDDSKDPALDILQDYISNGVVHYIEHAKEFLGVEHPLQP----GFDYCIKEWGPLHKWMGFIDIDEFILRPGISI---PDVLERYAASAAVALNWKVFGSSGFEMRPGG--VAHYTKCTPPEAYPSYFVKCIVQPRHTIRSLCVGHEFEYHPGGRVAVNVEGNSTTLKRSWSIPPAYSYLYINHYQVKSKQEFFEMKIPRGTGDGNSGPNEEYFQHIEAAATADCM 774
            LA+C V++DQ  D+REWVDYH   GV+K YIFDD+S  P+L +++D +  GVV Y E  + F   EHP        +D CI+ +  LH+WM FID+DE+ +    ++   PD+L+ Y    A+ +NW++FGSSG+  RP G  +  Y  C       +  +K I        +    H F Y  G + AVN         ++ ++      L ++HY  KS +++   KI RG+  GN   + E+F  +++ AT  CM
Sbjct:  110 LAMCLVVKDQGDDLREWVDYHRSIGVEKLYIFDDNSTIPSLVVVEDLVDAGVVEY-EAVESF---EHPSGKVQLWAYDTCIQRYRGLHQWMAFIDVDEYFIITDSNVTVLPDLLKDYMDYGALVVNWQMFGSSGYANRPPGGTLESYVDCFEVNHLENKHIKTIANLDFVECTDRDPHHFLYMDG-KHAVNTAYQVVEGAKADNV--VTDRLLLHHYVTKSLEQYIS-KIARGSAMGNR-KSIEFFDFVQSQATEKCM 358          
BLAST of jgi.p|Trimin1|164053 vs. uniprot
Match: E1Z8A0_CHLVA (Glycosyltransferase family 92 protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z8A0_CHLVA)

HSP 1 Score: 140 bits (354), Expect = 3.730e-36
Identity = 83/266 (31.20%), Postives = 132/266 (49.62%), Query Frame = 1
Query:   22 GILALCAVMRDQRADIREWVDYHYLYGVDKFYIFDDDSKDPALDILQDYISNGVVHY--IEHAKEFLG-----------VEHPLQPGFDYCIKEWGPLHKWMGFIDIDEFILRPGIS--IPDVLERYAASAAVALNWKVFGSSGFEMRPGGVAH-YTKCTPPEAYPSYFVKCIVQPRHTIRSLCVGHEFEYHPGGRVAVNVEGNSTTLKRSWSIPPAYSYLYINHYQVKSKQEFFEMKIPRGTGDGNSGPNEEYFQHIEAAATADC 771
            G LA+C  +R+Q A++ EW+DYH   GV   Y+ DD S+ P   +L  YI  G+V +  ++   E              + H    G+ YC+ ++G  H+WM +IDIDEF +    +  +P +L  Y     +A+NW++FGSSG + + G     YTKC  P    +  +K I   ++  R    G    ++P G   VN          S      YS L ++HY +KS+++F E K+ RG   G+ G   +++  IEA +  +C
Sbjct:   60 GYLAICTTVRNQHAELPEWLDYHRRLGVSHVYVMDDASQPPLEGVLAPYIEEGLVTHRMLKRVPEMQAEIREATCHEPYITHKQLMGYAYCLMDYGVRHQWMAYIDIDEFFVFYDSTPDLPTLLHEYEGYGGLAVNWRMFGSSGHKKKQGNTLRAYTKCFAPNNGENTQIKTIANMQYLARMA--GPHDAFYPPGHFTVNPSREPVVGPLSNGAD--YSRLALHHYAIKSREDF-EEKMARGDVMGDRGKLHDFWDRIEAGSVDNC 320          
BLAST of jgi.p|Trimin1|164053 vs. uniprot
Match: A0A2V0P786_9CHLO (Glycosyltransferase family 92 protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P786_9CHLO)

HSP 1 Score: 139 bits (349), Expect = 1.770e-35
Identity = 96/275 (34.91%), Postives = 139/275 (50.55%), Query Frame = 1
Query:   16 SAGILALCAVMRDQRADIREWVDYHYLYGVDKFYIFDDDSKDPALDILQDYISNGVVHYIEHAKEFLGV---EHPLQPGFDYCIKEWGPLHKWMGFIDIDEFI-LRPGISIPDVLERYAASAAVALNWKVFGSSGFEMRPGG--VAHYTKCTPPEAYPSYFVKCIVQPRHTIRSLCVGHEFEYHPGGRVAVNVEGNSTTLKRSWSIPPAYSYLYINHYQVKSKQEFFEMKIPRGTGDGNSGP-----NEEYFQHIEAAATADCMPLQWPRPRTVG 807
            ++  +ALC  ++D+ +DIREWV YH++ GVDKFYIFDD S  P   +L D I++G+V Y        G     +     ++YC+ ++G  HK+MGFID DEF+ L    ++P +L  Y     +A+    FGSSG   RP G  +A YTKC P    P  +VK  VQP    R + V H   Y  GG  AV+V G         +  PA     I+HY  +S +++ + +  RGT +G  GP     N  +  ++        +PL     R  G
Sbjct:   50 NSSYVALCLHVKDEHSDIREWVLYHHMIGVDKFYIFDDYSSPPMSVVLHDLIASGLVDYTFEMGPLPGRLVGTNKQDQAYNYCLHQYGSRHKFMGFIDADEFVVLARDATLPALLRDYEQYRGLAMFSIGFGSSGHISRPAGGVLASYTKCAPKT--PGGYVKSFVQPSKVDRIVDV-HTAVYRDGGH-AVDVWGREYKGPFEHTDRPADERAIIHHYHARSAEDW-QRRARRGT-NGVGGPPHPIKNFLFINNMSNQTCGAALPLAARLAREFG 318          
BLAST of jgi.p|Trimin1|164053 vs. uniprot
Match: A0A2V0PM01_9CHLO (Glycosyltransferase family 92 protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PM01_9CHLO)

HSP 1 Score: 140 bits (353), Expect = 6.610e-35
Identity = 89/265 (33.58%), Postives = 135/265 (50.94%), Query Frame = 1
Query:   10 DYSAGILALCAVMRDQR-ADIREWVDYHYLYGVDKFYIFDDDSKDPALDILQDYISNGVVHYI----EHAKEFLGVEHPLQPGFDYCIKEWGPLHKWMGFIDIDEFILRPGISIPDVLERYAAS----AAVALNWKVFGSSGFEMRP-GGV-AHYTKCTPPEAYPSYFVKCIVQPRHTIRSLCVGHEFEYHPGGRVAVNVEGNSTTLKRSWSIPPAYSYLYINHYQVKSKQEFFEMKIPRGTGDGNSGPNEEYFQHIEAAATADC 771
            D+  G  A+C+V+++Q  AD+REW++YH   G  K YI+D++S +P  D ++DY+ +G+V Y      H    L         ++ C   +   H+W+ FID DEFI+    S  D +E +         +A+NW +FGSSG  +RP GGV  +Y  C P +   +  VK I   RH + +    H   Y    +  VN  G    +K   +  P++  + + HY  KS+ EF E K+ RG+  GN   N  +FQ IE  A A C
Sbjct:  155 DWPDGYFAVCSVIKNQNGADLREWIEYHRYIGTRKIYIYDNNSTEPLADHIRDYLHSGLVEYTYFVGRHRYRDLFRTTSQWWAYNDCATRFATRHRWLAFIDGDEFIMLRNESRTDNIEEFLTDYDQYGGLAVNWMIFGSSGHLVRPHGGVLVNYRACLPSDQVENTHVKIIANTRHLLTAGDDPHSVFYRTRDKHTVNEMG--ARVKGPKTEAPSHRKIALYHYLTKSRGEF-EAKVRRGSAAGNF-KNMGFFQAIEDLANATC 415          
BLAST of jgi.p|Trimin1|164053 vs. uniprot
Match: A0A2P6U0V8_CHLSO (Glycosyltransferase family 92 protein n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U0V8_CHLSO)

HSP 1 Score: 137 bits (346), Expect = 5.990e-34
Identity = 91/269 (33.83%), Postives = 131/269 (48.70%), Query Frame = 1
Query:   16 SAGILALCAVMRDQRADIREWVDYHYLYGVDKFYIFDDDSKDPALDILQDYISNGVVHYIEHAKEFLGV--------EHPLQPGF------DYCIKEWGPLHKWMGFIDIDEF-ILRPGI-SIPDVLERYAASAAVALNWKVFGSSGFEMRPGG-VAHYTKCTPPEAYPSYFVKCIVQPRHTIRSLCVGHEFEYHPGGRVAVNVEGNSTTLKRSWSIPPAYSYLYINHYQVKSKQEFFEMKIPRGTGDGNSGPNEEYFQHIEAAATADC 771
            S GI A    ++ Q  D+ EW+ YH   GVD FY++D  SK P   +LQ +I  G+V YI +  +F           +H  +P F        C++++G  H+WM FID DEF +L  G  S+P +L  Y   A + LNW++ GSSG + R    +  YT C   +       K I+ P  T++     + F Y  GG  AV  +G       S  +  A   L I HY  KS QE F+ K+ RG G G     ++YF +++  AT  C
Sbjct:  180 SKGI-AFALAVKGQHEDLAEWLQYHSQLGVDHFYVYDTGSKPPLDTVLQPFIEEGLVTYI-YLDDFAAAAKRLTASNDHRYRPKFKQWIVYSMCLRDYGARHRWMAFIDSDEFLVLTDGTPSLPALLADYEDRAGLVLNWRILGSSGHKQRQNSTLLAYTSCYQRDVDEQLATKSIINPALTVQPPSPHNAFYY--GGCHAVQTDGTRVDTFASDRV--ADERLIIYHYITKS-QEDFDRKMARGDGMGRRDRKQDYFDNVQQKATEQC 441          
BLAST of jgi.p|Trimin1|164053 vs. uniprot
Match: A0A087SHE7_AUXPR (Glycosyltransferase family 92 protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SHE7_AUXPR)

HSP 1 Score: 133 bits (334), Expect = 8.590e-34
Identity = 80/260 (30.77%), Postives = 131/260 (50.38%), Query Frame = 1
Query:   13 YSAGILALCAVMRDQRADIREWVDYHYLYGVDKFYIFDDDSKDPALDILQDYISNGVVHYIEHAKEFLGVEHPLQPG-FDYCIKEWGPLHKWMGFIDIDEFILRPGIS----IPDVLERYAASAAVALNWKVFGSSGFEMRPGG--VAHYTKCTPPEAYPSYFVKCIVQPRHTIRSLCVGHEFEYHPGGRVAVNVEGNSTTLKRSWSIPPAYSYLYINHYQVKSKQEFFEMKIPRGTGDGNSGPNEEYFQHIEAAATADC 771
            +S   +A+CA  +D   D+REW DYH   GV + Y+FD D+ +P    + D+I+ G V Y      +L    P+    +D C++   PLH ++ FID+DEF++         +P +L+ +    A+A+NW++ G  G  ++PGG  + ++  CTP +   +  +K IV  +    +    H FEY  G   AV + G   T   S ++      LY  HY  KS  ++   K+ +G+G GN     E+   I+ A+T  C
Sbjct:    7 HSTEYVAICAATKDAGPDVREWADYHLRLGVARIYLFDTDNPEPVEPDIADFINQGRVEYY-----YLPRVTPITIKLYDLCLRHASPLHAFIAFIDVDEFLVMASAERARGLPGLLKEFEQHGALAVNWRLLGPGGHAIQPGGGVLQNFLACTPVQYPENRHIKSIVNTKFVRGTSSDPHHFEYAAGAS-AVTLAGEQVTEAMSATVSGDRMMLY--HYATKSMSQY-SGKMVKGSGMGNR-KGAEFLTRIDGASTEIC 256          
BLAST of jgi.p|Trimin1|164053 vs. uniprot
Match: A0A7J7PLB3_9CHLO (Glycosyltransferase family 92 protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PLB3_9CHLO)

HSP 1 Score: 132 bits (332), Expect = 6.300e-33
Identity = 85/264 (32.20%), Postives = 133/264 (50.38%), Query Frame = 1
Query:   13 YSAGILALCAVMRDQRADIREWVDYHYLYGVDKFYIFDDDSKDPALDILQDYISNGVVHY--IEHAKEFLGVEHPLQPGFDY--CIKEWGPLHKWMGFIDIDEFILRPGIS----IPDVLERYAASAAVALNWKVFGSSGFEMRP-GGV-AHYTKCTPPEAYPSYFVKCIVQPRHTIRSLCVGHEFEYHPGGRVA-VNVEGNSTTLKRSWSIPPAYSYLYINHYQVKSKQEFFEMKIPRGTGDGNSGPNEEYFQHIEAAATADC 771
            Y  G +A+CA++++Q  D+REW++YH   GV K Y++D++S  P L  + D + +G V Y        +  +       + Y  C+  +   H+W+ F+D DEFI+  G +    I D +  Y     +ALNW VFGSSG + RP GGV  +Y +C P +   +  VK I    H +      H   Y+   R   VN  G      +S   PP+++ + + HY  KS+ E+ + K+ RG+  GN   + E+F  I   AT  C
Sbjct:   40 YPDGFVAICAIVKNQHQDLREWLEYHKWLGVSKVYVYDNNSTVPLLPDIIDMVQSGYVEYSYFTGTPRYRDLFRTSSQWWAYNDCVTRFKHRHRWLAFVDADEFIVLQGAAGADNINDFMRGYDQYGGLALNWVVFGSSGHKQRPQGGVLVNYRQCLPLQQEQNQHVKVIANTAHLMTIGDNPHRVYYNDMKRFGTVNELGAPVPGPKS---PPSHTKVALYHYLTKSEDEYMQ-KMRRGSAAGNY-KSPEFFTAINGLATERC 298          
BLAST of jgi.p|Trimin1|164053 vs. uniprot
Match: A0A1D1ZPM3_AUXPR (Glycosyltransferase family 92 protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZPM3_AUXPR)

HSP 1 Score: 132 bits (333), Expect = 9.640e-33
Identity = 79/256 (30.86%), Postives = 129/256 (50.39%), Query Frame = 1
Query:   28 LALCAVMRDQRADIREWVDYHYLYGVDKFYIFDDDSKDPALDILQDYISNGVVHYIEHAKEFLGVEHPLQPG--FDYCIKEWGPLHKWMGFIDIDEFILRPGIS----IPDVLERYAASAAVALNWKVFGSSGFEMRPGG--VAHYTKCTPPEAYPSYFVKCIVQPRHTIRSLCVGHEFEYHPGGRVAVNVEGNSTTLKRSWSIPPAYSYLYINHYQVKSKQEFFEMKIPRGTGDGNSGPNEEYFQHIEAAATADC 771
            +A+CA  +D   D+REW DYH   GV + Y+FD D+ +P    + D+I+ G V Y  +      +  PL     +D C++   PLH ++ FID+DEF++         +P +L+ +    A+A+NW++ G  G  ++PGG  + ++  CTP +   +  +K IV  +    +    H FEY  G   AV + G   T   S ++      LY  HY  KS  ++   K+ +G+G GN     E+   I+ A+T  C
Sbjct:  107 VAICAATKDAGPDVREWADYHLRLGVARIYLFDTDNPEPVEPDIADFINQGRVEYY-YLPRVTPITVPLMQIKLYDLCLRHASPLHAFIAFIDVDEFLVMASAERARGLPGLLKEFEQHGALAVNWRLLGPGGHAIQPGGGVLQNFLACTPVQYPENRHIKSIVNTKFVRGTSSDPHHFEYAAGAS-AVTLAGEQVTEAMSATVSGDRMMLY--HYATKSMSQY-SGKMVKGSGMGNR-KGAEFLTRIDGASTEIC 356          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164053 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YXV8_9STRA4.830e-212100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A059LLJ4_9CHLO1.070e-3733.07Glycosyltransferase family 92 protein n=1 Tax=Heli... [more]
A0A8J9RE21_9CHLO8.330e-3734.88Probable glycosyltransferase family 92 protein RCO... [more]
E1Z8A0_CHLVA3.730e-3631.20Glycosyltransferase family 92 protein n=1 Tax=Chlo... [more]
A0A2V0P786_9CHLO1.770e-3534.91Glycosyltransferase family 92 protein n=1 Tax=Raph... [more]
A0A2V0PM01_9CHLO6.610e-3533.58Glycosyltransferase family 92 protein n=1 Tax=Raph... [more]
A0A2P6U0V8_CHLSO5.990e-3433.83Glycosyltransferase family 92 protein n=1 Tax=Chlo... [more]
A0A087SHE7_AUXPR8.590e-3430.77Glycosyltransferase family 92 protein n=1 Tax=Auxe... [more]
A0A7J7PLB3_9CHLO6.300e-3332.20Glycosyltransferase family 92 protein n=1 Tax=Scen... [more]
A0A1D1ZPM3_AUXPR9.640e-3330.86Glycosyltransferase family 92 protein n=2 Tax=Auxe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_29contigContig_29:582647..584333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164053|e_gw1.29.62.1
DescriptionGlycosyltransferase family 92
COG categoryM
Max annot lvl3041|Chlorophyta
EggNOG OGsCOG0463@1|root,2QTF9@2759|Eukaryota,37N9S@33090|Viridiplantae,34MM9@3041|Chlorophyta
Evalue5.07e-37
Seed ortholog554065.XP_005850160.1
Hectar predicted targeting categoryother localisation
TranscriptId164375
TrackFilteredModels1
ProteinId164053
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164053gene_9590Tribonema minus UTEX_B_3156 geneContig_29 582647..584333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164053Trimin1|164053|e_gw1.29.62.1Tribonema minus UTEX_B_3156 polypeptideContig_29 582647..584333 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9590_2exon_9590_2Tribonema minus UTEX_B_3156 exonContig_29 582647..583147 -
exon_9590_1exon_9590_1Tribonema minus UTEX_B_3156 exonContig_29 584019..584333 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9590CDS_9590Tribonema minus UTEX_B_3156 CDSContig_29 584019..584333 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9590 ID=mRNA_9590|Name=jgi.p|Trimin1|164053|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=816bp|location=Sequence derived from alignment at Contig_29:582647..584333- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCACGACTACTCCGCGGGAATCCTGGCCTTGTGTGCTGTCATGCG
AGATCAACGCGCAGACATTCGGGAGTGGGTGGACTATCACTACCTCTATG
GCGTGGACAAGTTTTACATTTTTGATGACGACAGCAAGGATCCCGCCTTG
GATATTTTGCAGGACTACATCAGCAATGGAGTGGTCCACTACATTGAGCA
TGCAAAGGAGTTTCTTGGGGTGGAGCACCCTCTGCAACCTGGCTTTGACT
ACTGCATCAAAGAATGGGGTCCGCTGCACAAGTGGATGGGGTTCATTGAC
ATAGATGAGTTCATCCTGCGGCCAGGCATCAGCATTCCAGACGTGCTGGA
AAGATATGCTGCCTCTGCCGCTGTCGCGCTGAACTGGAAGGTGTTTGGAT
CCTCAGGGTTTGAAATGCGCCCTGGGGGTGTTGCTCACTACACCAAGTGC
ACTCCGCCCGAGGCATACCCTAGCTATTTTGTCAAATGCATCGTGCAGCC
ACGGCACACCATACGCAGCCTCTGTGTAGGCCACGAGTTTGAGTACCACC
CTGGCGGACGAGTTGCCGTGAATGTTGAGGGGAACTCTACCACACTGAAA
AGGTCATGGAGCATCCCGCCTGCATACTCGTACCTGTACATCAACCACTA
CCAGGTGAAAAGCAAGCAGGAATTCTTTGAGATGAAGATCCCGCGTGGCA
CCGGGGATGGAAACTCTGGTCCTAATGAGGAATATTTTCAACATATAGAA
GCCGCGGCAACAGCCGATTGCATGCCATTGCAGTGGCCCCGACCACGTAC
AGTCGGGGGAGGCTGA
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protein sequence of jgi.p|Trimin1|164053

>Trimin1|164053|e_gw1.29.62.1 ID=Trimin1|164053|e_gw1.29.62.1|Name=jgi.p|Trimin1|164053|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=272bp
MVHDYSAGILALCAVMRDQRADIREWVDYHYLYGVDKFYIFDDDSKDPAL
DILQDYISNGVVHYIEHAKEFLGVEHPLQPGFDYCIKEWGPLHKWMGFID
IDEFILRPGISIPDVLERYAASAAVALNWKVFGSSGFEMRPGGVAHYTKC
TPPEAYPSYFVKCIVQPRHTIRSLCVGHEFEYHPGGRVAVNVEGNSTTLK
RSWSIPPAYSYLYINHYQVKSKQEFFEMKIPRGTGDGNSGPNEEYFQHIE
AAATADCMPLQWPRPRTVGGG*
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mRNA from alignment at Contig_29:582647..584333-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9590 ID=mRNA_9590|Name=jgi.p|Trimin1|164053|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1687bp|location=Sequence derived from alignment at Contig_29:582647..584333- (Tribonema minus UTEX_B_3156 )
ATGGTGCACGACTACTCCGCGGGAATCCTGGCCTTGTGTGCTGTCATGCG AGATCAACGCGCAGACATTCGGGAGTGGGTGGACTATCACTACCTCTATG GCGTGGACAAGTTTTACATTTTTGATGACGACAGCAAGGATCCCGCCTTG GATATTTTGCAGGACTACATCAGCAATGGAGTGGTCCACTACATTGAGCA TGCAAAGGAGTTTCTTGGGGTGGAGCACCCTCTGCAACCTGGCTTTGACT ACTGCATCAAAGAATGGGGTCCGCTGCACAAGTGGATGGGGTTCATTGAC ATAGATGAGTTCATCGTGATTGCACCGCCAATGGATCCGGTGAGGGTTTT GAGCTTGAACCTAAAGTAGACATTGCCACAGGTACAGCTACATGTTGCAC AGAATTACAACAATCTAAAGTAGAAATCTTATTGGAAGAATTCATCAGCG GTATCACCATGCTTATCTCATGTCAGACGGACTGCTTCTCGCCATTAGTA ACTTATCTCACTGTGTACAGCCTGGGATAATACGTAGCTGGTGGCTGAAT GTATAGTCAAGAAGCAGCTCTGATTGTAGAAACATCCGCAGAGCCCCTGT TGCTACGAGTGTTATGCGTCCGCTCTCAGAGCCAAACGCCTAATTGATCA TTGTGAATCATGCAACTTGATACACATACTGCGTTGCTTTGTATAGCCGT TGATGCCCTACGTGTGTTTAAAATTCAAATTGCGGTGATACCATCGGACC TGCAAGTCAGCAAGTCTTGCAAAGTTTAATCTCATCAACTGTGCTGAGGC CCTGTGTGTGTTTAAAATTCAAATTACGGTGATACCATCGGACCTGCAAG TCAGCAAGTCTTGCAAAGTTTAATCTCATCAAGTGTGCTGTGCAGTAGTA CCCAGAGCATGACGTTTTGTAGCACAAGTCACCTATGAGTACGAGCACAG TGTGCACCTCAATGACAGCTGCGACTGCTAATCACCACAGTGACTGTGAT ATCTTAATTTGTAACACCAGAACAGTCCAACAGCTACTTGTGAAAGGCAG CAGGCTGAGTTGGCTGCGCCAGCAGCATGCAACACCGTGTGACACTGTCA GCCAGTCTTATGGTGTGCTTGAGTTCAATTGGCATACCGCCCACTCACTT GCACTCTGCTCACCCTTTTCTCTTGTCCTCTTGCAGCTGCGGCCAGGCAT CAGCATTCCAGACGTGCTGGAAAGATATGCTGCCTCTGCCGCTGTCGCGC TGAACTGGAAGGTGTTTGGATCCTCAGGGTTTGAAATGCGCCCTGGGGGT GTTGCTCACTACACCAAGTGCACTCCGCCCGAGGCATACCCTAGCTATTT TGTCAAATGCATCGTGCAGCCACGGCACACCATACGCAGCCTCTGTGTAG GCCACGAGTTTGAGTACCACCCTGGCGGACGAGTTGCCGTGAATGTTGAG GGGAACTCTACCACACTGAAAAGGTCATGGAGCATCCCGCCTGCATACTC GTACCTGTACATCAACCACTACCAGGTGAAAAGCAAGCAGGAATTCTTTG AGATGAAGATCCCGCGTGGCACCGGGGATGGAAACTCTGGTCCTAATGAG GAATATTTTCAACATATAGAAGCCGCGGCAACAGCCGATTGCATGCCATT GCAGTGGCCCCGACCACGTACAGTCGGGGGAGGCTGA
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Coding sequence (CDS) from alignment at Contig_29:582647..584333-

>mRNA_9590 ID=mRNA_9590|Name=jgi.p|Trimin1|164053|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=816bp|location=Sequence derived from alignment at Contig_29:582647..584333- (Tribonema minus UTEX_B_3156 )
ATGGTGCACGACTACTCCGCGGGAATCCTGGCCTTGTGTGCTGTCATGCG
AGATCAACGCGCAGACATTCGGGAGTGGGTGGACTATCACTACCTCTATG
GCGTGGACAAGTTTTACATTTTTGATGACGACAGCAAGGATCCCGCCTTG
GATATTTTGCAGGACTACATCAGCAATGGAGTGGTCCACTACATTGAGCA
TGCAAAGGAGTTTCTTGGGGTGGAGCACCCTCTGCAACCTGGCTTTGACT
ACTGCATCAAAGAATGGGGTCCGCTGCACAAGTGGATGGGGTTCATTGAC
ATAGATGAGTTCATCCTGCGGCCAGGCATCAGCATTCCAGACGTGCTGGA
AAGATATGCTGCCTCTGCCGCTGTCGCGCTGAACTGGAAGGTGTTTGGAT
CCTCAGGGTTTGAAATGCGCCCTGGGGGTGTTGCTCACTACACCAAGTGC
ACTCCGCCCGAGGCATACCCTAGCTATTTTGTCAAATGCATCGTGCAGCC
ACGGCACACCATACGCAGCCTCTGTGTAGGCCACGAGTTTGAGTACCACC
CTGGCGGACGAGTTGCCGTGAATGTTGAGGGGAACTCTACCACACTGAAA
AGGTCATGGAGCATCCCGCCTGCATACTCGTACCTGTACATCAACCACTA
CCAGGTGAAAAGCAAGCAGGAATTCTTTGAGATGAAGATCCCGCGTGGCA
CCGGGGATGGAAACTCTGGTCCTAATGAGGAATATTTTCAACATATAGAA
GCCGCGGCAACAGCCGATTGCATGCCATTGCAGTGGCCCCGACCACGTAC
AGTCGGGGGAGGCTGA
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