mRNA_9580 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|138516
Unique NamemRNA_9580
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|138516 vs. uniprot
Match: A0A835Z1N6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1N6_9STRA)

HSP 1 Score: 246 bits (627), Expect = 1.250e-82
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 
Query:    1 LLFHADSACRIADIWRSYFSQPLFWAADLRVGFMGQYVEQVRNVHDYMGDLLAEADLYYKAEALVNLLSSWSSHHTTMQGMMEALWADMYMRGYIELFDVELVQLWLQELTAAGLSFP 354
            LLFHADSACRIADIWRSYFSQPLFWAADLRVGFMGQYVEQVRNVHDYMGDLLAEADLYYKAEALVNLLSSWSSHHTTMQGMMEALWADMYMRGYIELFDVELVQLWLQELTAAGLSFP
Sbjct:    1 LLFHADSACRIADIWRSYFSQPLFWAADLRVGFMGQYVEQVRNVHDYMGDLLAEADLYYKAEALVNLLSSWSSHHTTMQGMMEALWADMYMRGYIELFDVELVQLWLQELTAAGLSFP 118
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BLAST of jgi.p|Trimin1|138516 vs. uniprot
Match: A0A835Z0G2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0G2_9STRA)

HSP 1 Score: 144 bits (362), Expect = 7.640e-43
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:  142 MGDLLAEADLYYKAEALVNLLSSWSSHHTTMQGMMEALWADMYMRGYIELFDVELVQLWLQELTAAGLSFP 354
            MGDLLAEADLY+KAEALVNLLSSWSSHHTTMQGMMEALWADMYMRGYIELFDVELVQLWLQELTAAGLSFP
Sbjct:    1 MGDLLAEADLYHKAEALVNLLSSWSSHHTTMQGMMEALWADMYMRGYIELFDVELVQLWLQELTAAGLSFP 71
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BLAST of jgi.p|Trimin1|138516 vs. uniprot
Match: A0A7R8WF48_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WF48_9CRUS)

HSP 1 Score: 109 bits (272), Expect = 2.360e-25
Identity = 56/109 (51.38%), Postives = 69/109 (63.30%), Query Frame = 1 
Query:   28 RIADIWRSYFSQPLFWAADLRVGFMGQYVEQVRNVHDYMGDLLAEADLYYKAEALVNLLSSWSSHHTTMQGMMEALWADMYMRGYIELFDVELVQLWLQELTAAGLSFP 354
            R++DIWRSYF+Q LF  A LR+ F    V Q RN H+Y+ D  AE DLY KA  L++ L+ W S   ++   ME LW  +Y RGYIEL DV+ VQLWL  L  AG  FP
Sbjct:  372 RVSDIWRSYFAQCLFADAGLRLVFAPPKVVQERNPHNYLADFRAEQDLYNKAGQLISYLNEWDSDSDSIPERMEELWISLYERGYIELQDVQSVQLWLGALIQAGYKFP 480
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BLAST of jgi.p|Trimin1|138516 vs. uniprot
Match: A0A383WER9_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WER9_TETOB)

HSP 1 Score: 106 bits (264), Expect = 2.540e-24
Identity = 49/109 (44.95%), Postives = 67/109 (61.47%), Query Frame = 1 
Query:   28 RIADIWRSYFSQPLFWAADLRVGFMGQYVEQVRNVHDYMGDLLAEADLYYKAEALVNLLSSWSSHHTTMQGMMEALWADMYMRGYIELFDVELVQLWLQELTAAGLSFP 354
            R++DIWRSYF+Q L W     + F    V+Q+R+ H+Y+ D+ AE DLYYK+  LV  L  W+   +T+ G  E L  ++Y RGY+ L DV+L Q WL  L  AG  FP
Sbjct:  256 RVSDIWRSYFAQRLLWDVGYSIAFAPPMVDQLRSPHNYLADMQAEEDLYYKSGQLVTFLRQWAGSASTLPGRAEELMIELYERGYLGLQDVQLTQQWLLALARAGYQFP 364
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BLAST of jgi.p|Trimin1|138516 vs. uniprot
Match: A0A448ZGW6_9STRA (Uncharacterized protein n=2 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGW6_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.260e-18
Identity = 48/110 (43.64%), Postives = 65/110 (59.09%), Query Frame = 1 
Query:   28 RIADIWRSYFSQPLFWAADLRVGFMGQYVEQVRNVHDYMGDLLAEADLYYKAEALVNLLSSWSSHHT-TMQGMMEALWADMYMRGYIELFDVELVQLWLQELTAAGLSFP 354
            R+ DIWRS+  Q +     L V +    V   RN HDY+GDL+AEAD+Y K  +L+  L SWS +   T+   +  L+ ++Y R YIEL DVE V+ +LQ L A G  FP
Sbjct:  372 RVTDIWRSFIMQRVMTELGLYVLYTPPIVTHERNAHDYLGDLIAEADVYTKTSSLLAFLHSWSPNXAETLPEFIFELYIELYERDYIELHDVESVKEYLQSLVAIGYEFP 481
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BLAST of jgi.p|Trimin1|138516 vs. uniprot
Match: A0A7S4AU49_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AU49_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 4.110e-15
Identity = 48/135 (35.56%), Postives = 67/135 (49.63%), Query Frame = 1 
Query:   28 RIADIWRSYFSQPLFWAAD-------------LRVGFMGQYVEQVRNVHDYMGDLLAEADLYYKAEALVNLLSSWS-------------SHHTTMQGMMEALWADMYMRGYIELFDVELVQLWLQELTAAGLSFP 354
            R++DIWRSYFSQ LF   D             LR+ F+   + Q RN H  + D+ +E  L+ + E L++ LS W               +  ++   ME L+ D+Y R YI++ DVE VQLWL  L   G  FP
Sbjct:  499 RVSDIWRSYFSQALFRDIDTTIEGESSGSDAGLRLVFLPPDIFQERNEHALLADMQSEEQLFLRTEVLLDFLSRWKYEDEAENEDGNPDGNAWSIPARMEKLFIDLYERNYIDIVDVETVQLWLAALHEIGYDFP 633
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BLAST of jgi.p|Trimin1|138516 vs. uniprot
Match: UPI001458A7F6 (uncharacterized protein LOC117315589 n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458A7F6)

HSP 1 Score: 78.2 bits (191), Expect = 1.890e-14
Identity = 41/101 (40.59%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:   28 RIADIWRSYFSQPLFWAADLRVGFMGQYVEQVRNVHDYMGDLLAEADLYYKAEALVNLLSSWSSHHTTMQGMMEALWADMYMRGYIELFDVELVQLWLQEL 330
            R++DIWRSY +Q  F   D+RV F   YV Q RN H+ + D  AE D+Y K++ LV+LL+S +        +++ ++  +Y R Y+E FDV+  Q W+Q L
Sbjct:  589 RVSDIWRSYIAQYFFHKRDIRVAFSSPYVIQERNDHNDLKDFNAELDIYQKSKQLVDLLASDNPDEGDDIDLVD-MYTILYSRQYLEEFDVQFAQAWIQTL 688
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BLAST of jgi.p|Trimin1|138516 vs. uniprot
Match: A0A7J6N118_PERCH (NAD(P)-bd_dom domain-containing protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6N118_PERCH)

HSP 1 Score: 76.6 bits (187), Expect = 6.850e-14
Identity = 39/123 (31.71%), Postives = 68/123 (55.28%), Query Frame = 1 
Query:   28 RIADIWRSYFSQPLFWAADLRVGFMGQ-YVEQVRNVHDYMGDLLAEADLYYKAEALVNLLSSWSSHHT-------------TMQGMMEALWADMYMRGYIELFDVELVQLWLQELTAAGLSFP 354
            R++DIWR +    L W     V   G+ +V+Q+RN HDY+GD +AE ++Y K+E ++  L++W    +             T+ G +E  + +++ RG++E  +V  VQ W+   T+AG  +P
Sbjct:  337 RVSDIWRGF---RLLWDIGASVAVAGRTWVKQIRNSHDYLGDFIAEENVYEKSEVMMRFLTTWQPTASSTPFMSFPMRMTDTLPGRLEEAYIELFSRGFVEEDEVYHVQRWINAFTSAGYRWP 456
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BLAST of jgi.p|Trimin1|138516 vs. uniprot
Match: A0A1M7BGT5_9BACT (Uncharacterized protein n=1 Tax=Hymenobacter psychrotolerans DSM 18569 TaxID=1121959 RepID=A0A1M7BGT5_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 1.850e-8
Identity = 33/103 (32.04%), Postives = 52/103 (50.49%), Query Frame = 1 
Query:   28 RIADIWRSYFSQPLFWAADLRVGFMGQYVEQVRNVHDYMGDLLAEADLYYKAEALVNLLSSWSSHHTTMQGMMEALWADMYMRGYIELFDVELVQLWLQELTA 336
            R  DI R   +QP+ WA   R+GF    V Q RN HDY+ D  +E   Y     ++ ++ S  S   ++   +   +  +   G +   +VEL+QLWLQ++ A
Sbjct:  229 RFTDILRGLVAQPILWAHGYRLGFTEATVLQERNPHDYVKDFESEIPCYLHPNKVIEVVKSRISPDNSVSENLLRAYQGLQEVGIVSAQEVELLQLWLQDVAA 331
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BLAST of jgi.p|Trimin1|138516 vs. uniprot
Match: A0A7S4J916_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J916_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.870e-7
Identity = 28/60 (46.67%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:   28 RIADIWRSYFSQPLFWAADLRVGFMGQ-YVEQVRNVHDYMGDLLAEADLYYKAEALVNLL 204
            R++DIWRSY  Q + W  D+R+GF  +  V Q RNVH+ +GDL AE  LY +    V+ L
Sbjct:  415 RVSDIWRSYIVQRICWDIDIRIGFANEPMVVQERNVHNILGDLEAEGQLYQQTSHPVDFL 474
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|138516 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A835Z1N6_9STRA1.250e-82100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z0G2_9STRA7.640e-4398.59Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7R8WF48_9CRUS2.360e-2551.38Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
A0A383WER9_TETOB2.540e-2444.95Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A448ZGW6_9STRA1.260e-1843.64Uncharacterized protein n=2 Tax=Pseudo-nitzschia m... [more]
A0A7S4AU49_9STRA4.110e-1535.56Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
UPI001458A7F61.890e-1440.59uncharacterized protein LOC117315589 n=1 Tax=Pecte... [more]
A0A7J6N118_PERCH6.850e-1431.71NAD(P)-bd_dom domain-containing protein n=1 Tax=Pe... [more]
A0A1M7BGT5_9BACT1.850e-832.04Uncharacterized protein n=1 Tax=Hymenobacter psych... [more]
A0A7S4J916_9STRA1.870e-746.67Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_29contigContig_29:442174..442527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|138516|gw1.29.47.1
GOsGO:0000271,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005975,GO:0005976,GO:0006073,GO:0006109,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009664,GO:0009832,GO:0009889,GO:0009987,GO:0010383,GO:0010556,GO:0010675,GO:0010962,GO:0010981,GO:0012505,GO:0016043,GO:0016051,GO:0019222,GO:0030243,GO:0030244,GO:0030312,GO:0031323,GO:0031326,GO:0031410,GO:0031982,GO:0031984,GO:0032881,GO:0032885,GO:0032950,GO:0032951,GO:0033692,GO:0034637,GO:0034645,GO:0042546,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045229,GO:0050789,GO:0050794,GO:0051128,GO:0051273,GO:0051274,GO:0052324,GO:0052541,GO:0060255,GO:0065007,GO:0070589,GO:0070592,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0097708,GO:0098791,GO:1901576,GO:1903338,GO:2000112,GO:2001006,GO:2001009
Descriptionplant-type cell wall cellulose biosynthetic process
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs28KU8@1|root,2QTAG@2759|Eukaryota
Evalue1e-21
Seed ortholog2903.EOD23456
Hectar predicted targeting categoryother localisation
TranscriptId138838
TrackFilteredModels1
ProteinId138516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138516gene_9580Tribonema minus UTEX_B_3156 geneContig_29 442174..442527 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9580_1exon_9580_1Tribonema minus UTEX_B_3156 exonContig_29 442174..442527 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9580CDS_9580Tribonema minus UTEX_B_3156 CDSContig_29 442174..442527 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|138516Trimin1|138516|gw1.29.47.1Tribonema minus UTEX_B_3156 polypeptideContig_29 442174..442527 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9580 ID=mRNA_9580|Name=jgi.p|Trimin1|138516|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=354bp|location=Sequence derived from alignment at Contig_29:442174..442527+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCTTTTTCATGCCGACTCTGCATGTAGGATTGCTGACATCTGGAGGTC
CTACTTCTCACAGCCTCTCTTCTGGGCGGCAGATCTACGAGTGGGGTTCA
TGGGCCAGTACGTGGAGCAAGTGCGTAACGTGCACGACTACATGGGGGAT
CTACTCGCCGAAGCCGACCTCTATTACAAAGCGGAAGCCCTTGTGAACCT
CCTCAGCAGCTGGTCCAGCCATCACACCACCATGCAAGGCATGATGGAGG
CCCTGTGGGCAGACATGTACATGCGCGGATACATAGAGCTCTTCGATGTC
GAGCTCGTGCAGCTTTGGTTGCAAGAGCTGACAGCAGCGGGGCTATCATT
CCCT
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protein sequence of jgi.p|Trimin1|138516

>Trimin1|138516|gw1.29.47.1 ID=Trimin1|138516|gw1.29.47.1|Name=jgi.p|Trimin1|138516|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=118bp
LLFHADSACRIADIWRSYFSQPLFWAADLRVGFMGQYVEQVRNVHDYMGD
LLAEADLYYKAEALVNLLSSWSSHHTTMQGMMEALWADMYMRGYIELFDV
ELVQLWLQELTAAGLSFP
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mRNA from alignment at Contig_29:442174..442527+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9580 ID=mRNA_9580|Name=jgi.p|Trimin1|138516|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=354bp|location=Sequence derived from alignment at Contig_29:442174..442527+ (Tribonema minus UTEX_B_3156 )
CTGCTTTTTCATGCCGACTCTGCATGTAGGATTGCTGACATCTGGAGGTC
CTACTTCTCACAGCCTCTCTTCTGGGCGGCAGATCTACGAGTGGGGTTCA
TGGGCCAGTACGTGGAGCAAGTGCGTAACGTGCACGACTACATGGGGGAT
CTACTCGCCGAAGCCGACCTCTATTACAAAGCGGAAGCCCTTGTGAACCT
CCTCAGCAGCTGGTCCAGCCATCACACCACCATGCAAGGCATGATGGAGG
CCCTGTGGGCAGACATGTACATGCGCGGATACATAGAGCTCTTCGATGTC
GAGCTCGTGCAGCTTTGGTTGCAAGAGCTGACAGCAGCGGGGCTATCATT
CCCT
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Coding sequence (CDS) from alignment at Contig_29:442174..442527+

>mRNA_9580 ID=mRNA_9580|Name=jgi.p|Trimin1|138516|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=354bp|location=Sequence derived from alignment at Contig_29:442174..442527+ (Tribonema minus UTEX_B_3156 )
CTGCTTTTTCATGCCGACTCTGCATGTAGGATTGCTGACATCTGGAGGTC
CTACTTCTCACAGCCTCTCTTCTGGGCGGCAGATCTACGAGTGGGGTTCA
TGGGCCAGTACGTGGAGCAAGTGCGTAACGTGCACGACTACATGGGGGAT
CTACTCGCCGAAGCCGACCTCTATTACAAAGCGGAAGCCCTTGTGAACCT
CCTCAGCAGCTGGTCCAGCCATCACACCACCATGCAAGGCATGATGGAGG
CCCTGTGGGCAGACATGTACATGCGCGGATACATAGAGCTCTTCGATGTC
GAGCTCGTGCAGCTTTGGTTGCAAGAGCTGACAGCAGCGGGGCTATCATT
CCCT
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