mRNA_9570 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164045
Unique NamemRNA_9570
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|164045 vs. uniprot
Match: A0A835Z872_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z872_9STRA)

HSP 1 Score: 327 bits (838), Expect = 2.680e-112
Identity = 171/184 (92.93%), Postives = 175/184 (95.11%), Query Frame = 1 
Query:    1 MGDPGPDAVKVADLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVCAELSTRDLYTSDMWEELAASGAGMVVTGPPCTDFTPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGYQLCFLRLNASDFGPPYQRRRLFVLVVMAQGGTEV 552
            MGDPGPDAVKV DLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGV AELSTRDLYTS+MWEELAASGAGMVVTGPPCT+ T ARLVRADKGERREG RAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGY +CFLRL ASDFGPPYQRRRLFV  VMA+GGTEV
Sbjct:    1 MGDPGPDAVKVTDLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVGAELSTRDLYTSEMWEELAASGAGMVVTGPPCTESTSARLVRADKGERREG-RAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGYHICFLRLYASDFGPPYQRRRLFV--VMARGGTEV 181
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BLAST of jgi.p|Trimin1|164045 vs. uniprot
Match: A0A835YZ35_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ35_9STRA)

HSP 1 Score: 145 bits (367), Expect = 4.900e-37
Identity = 84/182 (46.15%), Postives = 100/182 (54.95%), Query Frame = 1 
Query:    7 DPGPDAVKVADLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVCAELSTRDLYTSDMWEELAASGAGMVVTGPPCTDFTPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGYQLCFLRLNASDFGPPYQRRRLFVLVVMAQGGTEV 552
            DPGPDA KVADLCAG+GGFSRAVQ+AGGRVVYAMD NA+ KP+YDANRG  AEL+  DLY  D W  L +SGAG+ V G PC D++ AR V A+KG                                                   Y + FLR+ ASD GPPY++ RL  + V A+GG  V
Sbjct:  440 DPGPDAPKVADLCAGLGGFSRAVQLAGGRVVYAMDNNASVKPLYDANRGAGAELTISDLYLPDTWTALVSSGAGVAVAGTPCRDWSSARHVDANKG---------------------------------------------------YHVSFLRMRASDHGPPYKKHRL--IAVFARGGPAV 568
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BLAST of jgi.p|Trimin1|164045 vs. uniprot
Match: A0A1Q4BBH7_9HYPH (Cytosine-specific methyltransferase n=1 Tax=Rhizobiales bacterium 62-17 TaxID=1895810 RepID=A0A1Q4BBH7_9HYPH)

HSP 1 Score: 76.6 bits (187), Expect = 5.640e-13
Identity = 58/167 (34.73%), Postives = 84/167 (50.30%), Query Frame = 1 
Query:   25 VKVADLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVCA-ELSTRDLYTSDMWEELAASGAGMVVTGPPCTDFTPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGYQLCFLRLNASDFGPPYQRRRLFVL 522
            V+  +L +G GG S  +Q AG  ++ A D    A  VY  N G    +   +D++   +   LAA    ++V GPPC DF+ A       GER EG RAALT      +T ++    ++ENV          +A A+    GY L   +L+AS +G P +RRRLFV+
Sbjct:  128 VRTVELFSGAGGMSLGLQRAGCEIIQAYDSWDKAVEVYRRNIGSHVWQADLKDIFR--IGPMLAALAPDLIVGGPPCQDFSAA-------GERVEGERAALTRAFAMLVTIVRPKWFLMENVPLAARSQAWTDARAMLVNAGYGLTESKLDASLYGVPQRRRRLFVI 285
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BLAST of jgi.p|Trimin1|164045 vs. uniprot
Match: A0A336JXU6_9BRAD (DNA (cytosine-5-)-methyltransferase n=1 Tax=Rhodopseudomonas pentothenatexigens TaxID=999699 RepID=A0A336JXU6_9BRAD)

HSP 1 Score: 73.6 bits (179), Expect = 5.740e-12
Identity = 56/167 (33.53%), Postives = 84/167 (50.30%), Query Frame = 1 
Query:   25 VKVADLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVCA-ELSTRDLYTSDMWEELAASGAGMVVTGPPCTDFTPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGYQLCFLRLNASDFGPPYQRRRLFVL 522
            ++  +L AG GG S  +  AG  V+ A D    A  VY  N G    ++  +D++   +   +A+    M+V GPPC DF+ A       GER EG RAALT      +   +   +++ENV          ++ A+  + GY L   RL+AS +G P +RRRLFV+
Sbjct:    1 MRAVELFAGAGGMSLGLMRAGIDVIQAYDSWKPAIDVYRRNVGPHVWQMDLKDIF--HVGPMIASLAPDMIVGGPPCQDFSAA-------GERVEGERAALTRAFAMLVVIARPEWILMENVPLAARSQSWVDSRAIIVKAGYGLTEARLDASFYGVPQRRRRLFVV 158
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BLAST of jgi.p|Trimin1|164045 vs. uniprot
Match: UPI0007DAB334 (DNA (cytosine-5-)-methyltransferase n=1 Tax=Brucella pseudogrignonensis TaxID=419475 RepID=UPI0007DAB334)

HSP 1 Score: 72.0 bits (175), Expect = 1.820e-11
Identity = 55/167 (32.93%), Postives = 80/167 (47.90%), Query Frame = 1 
Query:   25 VKVADLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVCAELSTRDLYTS-DMWEELAASGAGMVVTGPPCTDFTPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGYQLCFLRLNASDFGPPYQRRRLFVL 522
            ++  DL  G GG S  +Q AG  ++ A D    A   Y  N G  + + T DL     +   LA+    M+  GPPC D++ A       GERREG  A++T      +T  +    ++ENV          EA A+  + GY L   +L+AS +G P  R+RLFV+
Sbjct:    1 MRAIDLFCGAGGMSLGLQNAGFEIIQAYDAWEPAVATYRRNVG--SHVWTHDLNDILGVGSMLASLQPDMIAGGPPCQDYSVA-------GERREGKNASMTKAFAMLVTIARPKWFLMENVEQARKSRAWAEARAMLVKAGYGLTECKLDASYYGVPQARKRLFVV 158
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BLAST of jgi.p|Trimin1|164045 vs. uniprot
Match: UPI001CC903FC (DNA cytosine methyltransferase n=1 Tax=Mesorhizobium sp. ESP7-2 TaxID=2876622 RepID=UPI001CC903FC)

HSP 1 Score: 71.2 bits (173), Expect = 3.850e-11
Identity = 58/174 (33.33%), Postives = 84/174 (48.28%), Query Frame = 1 
Query:    4 GDPGPDAVKVADLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVCA-ELSTRDLYTSDMWEELAASGAGMVVTGPPCTDFTPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGYQLCFLRLNASDFGPPYQRRRLFVL 522
            G+ G   V+  +L AG GG S  ++ AG  VV A D  A A  VY  N G    +   +D++   +   + A    ++  GPPC DF+ A       GER EG RAALT      +   +    ++ENV          +A A+  + GY L   +L+AS +G P  R+RLFV+
Sbjct:   21 GNEGVCRVRAVELFAGAGGMSLGLKRAGFEVVQAYDSWAPAVEVYRRNLGPHIWQADLKDIF--HVGPMITALAPDIICGGPPCQDFSSA-------GERIEGERAALTRAFAMLVCIARPSWFLMENVPRAAQSQAWADARAMLVKAGYGLTESKLDASFYGVPQIRKRLFVV 185
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BLAST of jgi.p|Trimin1|164045 vs. uniprot
Match: UPI001CFFF0BA (DNA cytosine methyltransferase n=1 Tax=Neorhizobium sp. T786 TaxID=2883104 RepID=UPI001CFFF0BA)

HSP 1 Score: 70.9 bits (172), Expect = 5.100e-11
Identity = 53/169 (31.36%), Postives = 84/169 (49.70%), Query Frame = 1 
Query:   25 VKVADLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRG---VCAELSTRDLYTSDMWEELAASGAGMVVTGPPCTDFTPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGYQLCFLRLNASDFGPPYQRRRLFVL 522
            ++V +L +G GG S  +Q AG  ++ A D    A   Y+ N G   V A+L  +DL +  +  E+ +    ++  GPPC D++ A       G R+E   A LT      ++ ++    ++ENV+        +EA  L +  GY     R+NAS +G P  RRRLFV+
Sbjct:    1 MRVVELFSGAGGMSLGLQQAGFEILRAYDAWPVAVENYNRNIGNHAVIADL--KDLLS--IVPEILSLTPDLICGGPPCQDYSSA-------GNRKEADNARLTMAFAMIVSIVKPQWFMMENVIGCAKSATWREARMLLKRAGYGFTESRINASHYGVPQSRRRLFVI 158
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BLAST of jgi.p|Trimin1|164045 vs. uniprot
Match: UPI00115C98BB (DNA cytosine methyltransferase n=1 Tax=Rhodopseudomonas palustris TaxID=1076 RepID=UPI00115C98BB)

HSP 1 Score: 70.1 bits (170), Expect = 9.440e-11
Identity = 55/167 (32.93%), Postives = 81/167 (48.50%), Query Frame = 1 
Query:   25 VKVADLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVCA-ELSTRDLYTSDMWEELAASGAGMVVTGPPCTDFTPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGYQLCFLRLNASDFGPPYQRRRLFVL 522
            V+  +L  G GG S   + AG  +V A D    A  +Y  N G    +   +D++   +   LA     +++ GPPC DF+ A       GER EG RAALT      +  ++    V+ENV          +A A+  + GY L   +L+AS +G P +RRRLFV+
Sbjct:    4 VRTVELFCGAGGMSLGFKRAGFELVQAYDSWDKAVEIYRRNLGGSVWQADLKDIFR--IGPMLATLAPDILIGGPPCQDFSAA-------GERVEGERAALTRAFAMLVAIVRPRWFVMENVPLAARSQAWIDARAMLVKAGYGLTEAKLDASYYGVPQRRRRLFVI 161
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BLAST of jgi.p|Trimin1|164045 vs. uniprot
Match: A0A1H6H0Z6_9HYPH (Cytosine-specific methyltransferase n=2 Tax=Rhizobium sp. NFR12 TaxID=1566261 RepID=A0A1H6H0Z6_9HYPH)

HSP 1 Score: 69.7 bits (169), Expect = 1.280e-10
Identity = 52/167 (31.14%), Postives = 77/167 (46.11%), Query Frame = 1 
Query:   25 VKVADLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANRGVCAELSTRDLYTS-DMWEELAASGAGMVVTGPPCTDFTPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGYQLCFLRLNASDFGPPYQRRRLFVL 522
            ++V +L  G GG S  ++ AG  +V A D    A   Y  NR + +     DL     +  EL      M+  GPPC D++ A       G R E   A LT      +  ++    V+ENV +    +  QEA  + +  GY +   +L+AS +G P  RRRLFV+
Sbjct:    1 MRVVELFCGAGGMSLGLKQAGFEIVNAYDAWPVAVENY--NRNISSHAKVTDLGDILSVVPELLRLAPDMIAGGPPCQDYSSA-------GRREEADNAKLTLAFAILVATVRPAWFVMENVTNAAKSSTWQEARKILKAAGYGITESKLDASRYGVPQSRRRLFVI 158
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BLAST of jgi.p|Trimin1|164045 vs. uniprot
Match: A0A503PNC5_9HYPH (DNA (cytosine-5-)-methyltransferase n=1 Tax=Mesorhizobium sp. B2-4-6 TaxID=2589943 RepID=A0A503PNC5_9HYPH)

HSP 1 Score: 66.2 bits (160), Expect = 1.990e-9
Identity = 53/155 (34.19%), Postives = 74/155 (47.74%), Query Frame = 1 
Query:   61 FSRAVQMAGGRVVYAMDRNAAAKPVYDANRG-VCAELSTRDLYTSDMWEELAASGAGMVVTGPPCTDFTPARLVRADKGERREGTRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGYQLCFLRLNASDFGPPYQRRRLFVL 522
             S  ++ AG  VV A D    A  VY AN G    +   +D++   +   LAA    ++V GPPC DF+ A       GER EG RA LT      +   +    ++ENV          +A A+  + GY L   +LNAS +G P  R+RLFV+
Sbjct:    1 MSLGLKGAGFEVVAAYDSWQGAVDVYRANLGGYVRQADLKDIFA--IGPTLAALAPDLIVGGPPCQDFSAA-------GERIEGERAGLTRAFAMLVCIARPKWFLMENVPLATRSQAWADARAMLVKAGYGLTETKLNASFYGVPQDRKRLFVI 146
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164045 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z872_9STRA2.680e-11292.93S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835YZ35_9STRA4.900e-3746.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1Q4BBH7_9HYPH5.640e-1334.73Cytosine-specific methyltransferase n=1 Tax=Rhizob... [more]
A0A336JXU6_9BRAD5.740e-1233.53DNA (cytosine-5-)-methyltransferase n=1 Tax=Rhodop... [more]
UPI0007DAB3341.820e-1132.93DNA (cytosine-5-)-methyltransferase n=1 Tax=Brucel... [more]
UPI001CC903FC3.850e-1133.33DNA cytosine methyltransferase n=1 Tax=Mesorhizobi... [more]
UPI001CFFF0BA5.100e-1131.36DNA cytosine methyltransferase n=1 Tax=Neorhizobiu... [more]
UPI00115C98BB9.440e-1132.93DNA cytosine methyltransferase n=1 Tax=Rhodopseudo... [more]
A0A1H6H0Z6_9HYPH1.280e-1031.14Cytosine-specific methyltransferase n=2 Tax=Rhizob... [more]
A0A503PNC5_9HYPH1.990e-934.19DNA (cytosine-5-)-methyltransferase n=1 Tax=Mesorh... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_29contigContig_29:363314..363877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164045|e_gw1.29.31.1
BRITEko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036
KEGG rclassRC00003,RC00332
KEGG ReactionR04858
KEGG ModuleM00035
KEGG Pathwayko00270,ko01100,ko05206,map00270,map01100,map05206
KEGG koko:K00558,ko:K07486
EC2.1.1.37
Preferred namedcm
DescriptionDNA (cytosine-5-)-methyltransferase activity
COG categoryL
Max annot lvl2|Bacteria
EggNOG OGsCOG0270@1|root,COG0270@2|Bacteria
Evalue1.04e-13
Seed ortholog1122973.KB904238_gene454
Hectar predicted targeting categoryother localisation
TranscriptId164367
TrackFilteredModels1
ProteinId164045
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164045gene_9570Tribonema minus UTEX_B_3156 geneContig_29 363314..363877 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9570_1exon_9570_1Tribonema minus UTEX_B_3156 exonContig_29 363314..363877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9570CDS_9570Tribonema minus UTEX_B_3156 CDSContig_29 363314..363877 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164045Trimin1|164045|e_gw1.29.31.1Tribonema minus UTEX_B_3156 polypeptideContig_29 363314..363877 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9570 ID=mRNA_9570|Name=jgi.p|Trimin1|164045|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=564bp|location=Sequence derived from alignment at Contig_29:363314..363877- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGACCCTGGGCCGGACGCGGTAAAAGTGGCAGACCTCTGTGCCGG
CATTGGGGGGTTCAGCCGTGCCGTACAGATGGCAGGAGGGCGTGTAGTGT
ACGCCATGGACCGCAACGCCGCAGCGAAGCCCGTCTACGATGCCAATCGA
GGTGTTTGTGCTGAGCTCTCCACCAGAGACCTGTACACCTCTGACATGTG
GGAGGAACTGGCGGCCTCCGGCGCTGGCATGGTAGTAACGGGGCCCCCTT
GTACAGATTTCACACCAGCACGCTTGGTACGAGCAGACAAAGGGGAGCGT
AGAGAGGGCACCAGAGCAGCCCTCACGCCCTTGCTGGTGCATCAGCTGAC
GCAAATGCAGATGCCACTGGTGGTGTTGGAAAATGTTGTGTCTATTGAGT
CAATGACTCGAGGACAGGAGGCCTTCGCATTAGCACGCGAAAGGGGGTAT
CAGCTGTGCTTCCTACGGCTGAACGCCAGTGACTTTGGGCCACCATACCA
ACGGCGGCGCTTATTTGTACTAGTAGTCATGGCTCAGGGTGGGACTGAAG
TGGTGACGCCCTAG
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protein sequence of jgi.p|Trimin1|164045

>Trimin1|164045|e_gw1.29.31.1 ID=Trimin1|164045|e_gw1.29.31.1|Name=jgi.p|Trimin1|164045|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=188bp
MGDPGPDAVKVADLCAGIGGFSRAVQMAGGRVVYAMDRNAAAKPVYDANR
GVCAELSTRDLYTSDMWEELAASGAGMVVTGPPCTDFTPARLVRADKGER
REGTRAALTPLLVHQLTQMQMPLVVLENVVSIESMTRGQEAFALARERGY
QLCFLRLNASDFGPPYQRRRLFVLVVMAQGGTEVVTP*
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mRNA from alignment at Contig_29:363314..363877-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9570 ID=mRNA_9570|Name=jgi.p|Trimin1|164045|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=564bp|location=Sequence derived from alignment at Contig_29:363314..363877- (Tribonema minus UTEX_B_3156 )
ATGGGGGACCCTGGGCCGGACGCGGTAAAAGTGGCAGACCTCTGTGCCGG
CATTGGGGGGTTCAGCCGTGCCGTACAGATGGCAGGAGGGCGTGTAGTGT
ACGCCATGGACCGCAACGCCGCAGCGAAGCCCGTCTACGATGCCAATCGA
GGTGTTTGTGCTGAGCTCTCCACCAGAGACCTGTACACCTCTGACATGTG
GGAGGAACTGGCGGCCTCCGGCGCTGGCATGGTAGTAACGGGGCCCCCTT
GTACAGATTTCACACCAGCACGCTTGGTACGAGCAGACAAAGGGGAGCGT
AGAGAGGGCACCAGAGCAGCCCTCACGCCCTTGCTGGTGCATCAGCTGAC
GCAAATGCAGATGCCACTGGTGGTGTTGGAAAATGTTGTGTCTATTGAGT
CAATGACTCGAGGACAGGAGGCCTTCGCATTAGCACGCGAAAGGGGGTAT
CAGCTGTGCTTCCTACGGCTGAACGCCAGTGACTTTGGGCCACCATACCA
ACGGCGGCGCTTATTTGTACTAGTAGTCATGGCTCAGGGTGGGACTGAAG
TGGTGACGCCCTAG
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Coding sequence (CDS) from alignment at Contig_29:363314..363877-

>mRNA_9570 ID=mRNA_9570|Name=jgi.p|Trimin1|164045|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=564bp|location=Sequence derived from alignment at Contig_29:363314..363877- (Tribonema minus UTEX_B_3156 )
ATGGGGGACCCTGGGCCGGACGCGGTAAAAGTGGCAGACCTCTGTGCCGG
CATTGGGGGGTTCAGCCGTGCCGTACAGATGGCAGGAGGGCGTGTAGTGT
ACGCCATGGACCGCAACGCCGCAGCGAAGCCCGTCTACGATGCCAATCGA
GGTGTTTGTGCTGAGCTCTCCACCAGAGACCTGTACACCTCTGACATGTG
GGAGGAACTGGCGGCCTCCGGCGCTGGCATGGTAGTAACGGGGCCCCCTT
GTACAGATTTCACACCAGCACGCTTGGTACGAGCAGACAAAGGGGAGCGT
AGAGAGGGCACCAGAGCAGCCCTCACGCCCTTGCTGGTGCATCAGCTGAC
GCAAATGCAGATGCCACTGGTGGTGTTGGAAAATGTTGTGTCTATTGAGT
CAATGACTCGAGGACAGGAGGCCTTCGCATTAGCACGCGAAAGGGGGTAT
CAGCTGTGCTTCCTACGGCTGAACGCCAGTGACTTTGGGCCACCATACCA
ACGGCGGCGCTTATTTGTACTAGTAGTCATGGCTCAGGGTGGGACTGAAG
TGGTGACGCCCTAG
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