mRNA_9551 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164108
Unique NamemRNA_9551
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|164108 vs. uniprot
Match: A0A835Z0G2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0G2_9STRA)

HSP 1 Score: 146 bits (369), Expect = 9.620e-45
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:    1 MGDLLAEADLYHKAEALVNLLSSWSSHHTTMQGMMEALWADMYMRGYIELFDVELVQLWLQELTAAGLSFP 213
            MGDLLAEADLYHKAEALVNLLSSWSSHHTTMQGMMEALWADMYMRGYIELFDVELVQLWLQELTAAGLSFP
Sbjct:    1 MGDLLAEADLYHKAEALVNLLSSWSSHHTTMQGMMEALWADMYMRGYIELFDVELVQLWLQELTAAGLSFP 71
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BLAST of jgi.p|Trimin1|164108 vs. uniprot
Match: A0A835Z1N6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1N6_9STRA)

HSP 1 Score: 144 bits (363), Expect = 3.240e-43
Identity = 70/71 (98.59%), Postives = 71/71 (100.00%), Query Frame = 1 
Query:    1 MGDLLAEADLYHKAEALVNLLSSWSSHHTTMQGMMEALWADMYMRGYIELFDVELVQLWLQELTAAGLSFP 213
            MGDLLAEADLY+KAEALVNLLSSWSSHHTTMQGMMEALWADMYMRGYIELFDVELVQLWLQELTAAGLSFP
Sbjct:   48 MGDLLAEADLYYKAEALVNLLSSWSSHHTTMQGMMEALWADMYMRGYIELFDVELVQLWLQELTAAGLSFP 118
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BLAST of jgi.p|Trimin1|164108 vs. uniprot
Match: A0A7R8WF48_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8WF48_9CRUS)

HSP 1 Score: 72.0 bits (175), Expect = 4.620e-13
Identity = 35/71 (49.30%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:    1 MGDLLAEADLYHKAEALVNLLSSWSSHHTTMQGMMEALWADMYMRGYIELFDVELVQLWLQELTAAGLSFP 213
            + D  AE DLY+KA  L++ L+ W S   ++   ME LW  +Y RGYIEL DV+ VQLWL  L  AG  FP
Sbjct:  410 LADFRAEQDLYNKAGQLISYLNEWDSDSDSIPERMEELWISLYERGYIELQDVQSVQLWLGALIQAGYKFP 480
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BLAST of jgi.p|Trimin1|164108 vs. uniprot
Match: A0A7S4AU49_9STRA (Hypothetical protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AU49_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 7.170e-6
Identity = 28/84 (33.33%), Postives = 42/84 (50.00%), Query Frame = 1 
Query:    1 MGDLLAEADLYHKAEALVNLLSSWS-------------SHHTTMQGMMEALWADMYMRGYIELFDVELVQLWLQELTAAGLSFP 213
            + D+ +E  L+ + E L++ LS W               +  ++   ME L+ D+Y R YI++ DVE VQLWL  L   G  FP
Sbjct:  550 LADMQSEEQLFLRTEVLLDFLSRWKYEDEAENEDGNPDGNAWSIPARMEKLFIDLYERNYIDIVDVETVQLWLAALHEIGYDFP 633
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164108 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835Z0G2_9STRA9.620e-45100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z1N6_9STRA3.240e-4398.59Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7R8WF48_9CRUS4.620e-1349.30Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
A0A7S4AU49_9STRA7.170e-633.33Hypothetical protein n=2 Tax=Pseudo-nitzschia aust... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_29contigContig_29:125431..125643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164108|e_gw1.29.34.1
GOsGO:0000271,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005975,GO:0005976,GO:0006073,GO:0006109,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009664,GO:0009832,GO:0009889,GO:0009987,GO:0010383,GO:0010556,GO:0010675,GO:0010962,GO:0010981,GO:0012505,GO:0016043,GO:0016051,GO:0019222,GO:0030243,GO:0030244,GO:0030312,GO:0031323,GO:0031326,GO:0031410,GO:0031982,GO:0031984,GO:0032881,GO:0032885,GO:0032950,GO:0032951,GO:0033692,GO:0034637,GO:0034645,GO:0042546,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045229,GO:0050789,GO:0050794,GO:0051128,GO:0051273,GO:0051274,GO:0052324,GO:0052541,GO:0060255,GO:0065007,GO:0070589,GO:0070592,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0097708,GO:0098791,GO:1901576,GO:1903338,GO:2000112,GO:2001006,GO:2001009
Descriptionplant-type cell wall cellulose biosynthetic process
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs28KU8@1|root,2QTAG@2759|Eukaryota
Evalue2.19e-06
Seed ortholog2850.Phatr45163
Hectar predicted targeting categoryother localisation
TranscriptId164430
TrackFilteredModels1
ProteinId164108
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164108gene_9551Tribonema minus UTEX_B_3156 geneContig_29 125431..125643 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9551_1exon_9551_1Tribonema minus UTEX_B_3156 exonContig_29 125431..125643 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9551CDS_9551Tribonema minus UTEX_B_3156 CDSContig_29 125431..125643 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164108Trimin1|164108|e_gw1.29.34.1Tribonema minus UTEX_B_3156 polypeptideContig_29 125431..125643 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9551 ID=mRNA_9551|Name=jgi.p|Trimin1|164108|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=213bp|location=Sequence derived from alignment at Contig_29:125431..125643- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGATCTACTCGCCGAAGCCGACCTCTATCACAAAGCAGAAGCCCT
TGTGAACCTCCTCAGCAGCTGGTCTAGCCATCACACTACCATGCAAGGCA
TGATGGAGGCCCTGTGGGCGGACATGTACATGCGCGGATACATAGAGCTC
TTTGATGTAGAGCTCGTGCAGCTTTGGTTGCAAGAGCTGACAGCAGCGGG
GCTATCATTCCCT
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protein sequence of jgi.p|Trimin1|164108

>Trimin1|164108|e_gw1.29.34.1 ID=Trimin1|164108|e_gw1.29.34.1|Name=jgi.p|Trimin1|164108|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=71bp
MGDLLAEADLYHKAEALVNLLSSWSSHHTTMQGMMEALWADMYMRGYIEL
FDVELVQLWLQELTAAGLSFP
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mRNA from alignment at Contig_29:125431..125643-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9551 ID=mRNA_9551|Name=jgi.p|Trimin1|164108|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=213bp|location=Sequence derived from alignment at Contig_29:125431..125643- (Tribonema minus UTEX_B_3156 )
ATGGGGGATCTACTCGCCGAAGCCGACCTCTATCACAAAGCAGAAGCCCT
TGTGAACCTCCTCAGCAGCTGGTCTAGCCATCACACTACCATGCAAGGCA
TGATGGAGGCCCTGTGGGCGGACATGTACATGCGCGGATACATAGAGCTC
TTTGATGTAGAGCTCGTGCAGCTTTGGTTGCAAGAGCTGACAGCAGCGGG
GCTATCATTCCCT
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Coding sequence (CDS) from alignment at Contig_29:125431..125643-

>mRNA_9551 ID=mRNA_9551|Name=jgi.p|Trimin1|164108|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=213bp|location=Sequence derived from alignment at Contig_29:125431..125643- (Tribonema minus UTEX_B_3156 )
ATGGGGGATCTACTCGCCGAAGCCGACCTCTATCACAAAGCAGAAGCCCT
TGTGAACCTCCTCAGCAGCTGGTCTAGCCATCACACTACCATGCAAGGCA
TGATGGAGGCCCTGTGGGCGGACATGTACATGCGCGGATACATAGAGCTC
TTTGATGTAGAGCTCGTGCAGCTTTGGTTGCAAGAGCTGACAGCAGCGGG
GCTATCATTCCCT
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