mRNA_9541 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|140345
Unique NamemRNA_9541
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|140345 vs. uniprot
Match: A0A835YYY1_9STRA (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYY1_9STRA)

HSP 1 Score: 333 bits (854), Expect = 8.710e-116
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1
Query:    1 MEMYCGAGGFTHGVKEYLDTALATDFSQSARALYARNHPAARVIQGDANERGVQLALITEATRLGVEVGLGGPPCTHFSQAGKRETHEGWQCVLSMLLVHAAIPSLRMTVLENVLGFMSTPQWQHTLAAARALGFSFSHHVVTGDDCGLPTMRRRVFLVLTRG 489
            MEMYCGAGGFTHGVKEYLDTALATDFSQSARALYARNHPAARVIQGDANERGVQLALITEATRLGVEVGLGGPPCTHFSQAGKRETHEGWQCVLSMLLVHAAIPSLRMTVLENVLGFMSTPQWQHTLAAARALGFSFSHHVVTGDDCGLPTMRRRVFLVLTRG
Sbjct:    1 MEMYCGAGGFTHGVKEYLDTALATDFSQSARALYARNHPAARVIQGDANERGVQLALITEATRLGVEVGLGGPPCTHFSQAGKRETHEGWQCVLSMLLVHAAIPSLRMTVLENVLGFMSTPQWQHTLAAARALGFSFSHHVVTGDDCGLPTMRRRVFLVLTRG 163          
BLAST of jgi.p|Trimin1|140345 vs. uniprot
Match: A0A836CA60_9STRA (S-adenosyl-L-methionine-dependent methyltransferase (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA60_9STRA)

HSP 1 Score: 179 bits (454), Expect = 6.930e-55
Identity = 84/159 (52.83%), Postives = 117/159 (73.58%), Query Frame = 1
Query:    1 MEMYCGAGGFTHGVKEYLDTALATDFSQSARALYARNHPAARVIQGDANERGVQLALITEATRLGVEVGLGGPPCTHFSQAGKRETHEGWQCVLSMLLVHAAIPSLRMTVLENVLGFMSTPQWQHTLAAARALGFSFSHHVVTGDDCGLPTMRRRVFLV 477
            ME++CGAGG + G K ++ T LA+D ++ A  L+A NH    V+  + N+R  QL +I EA RLGVEV  GGPPCT FS +GKR + +G QC++SML V AA+ ++RM +LENV+GF+STP++Q TL  A+ LGF  SH+V++ +DCGLPT RRRVF++
Sbjct:    3 MELFCGAGGLSEGAKPFVHTVLASDINERACKLFASNHRGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVISVNDCGLPTKRRRVFIM 161          
BLAST of jgi.p|Trimin1|140345 vs. uniprot
Match: A0A835YGJ9_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGJ9_9STRA)

HSP 1 Score: 190 bits (482), Expect = 6.150e-53
Identity = 89/163 (54.60%), Postives = 121/163 (74.23%), Query Frame = 1
Query:    1 MEMYCGAGGFTHGVKEYLDTALATDFSQSARALYARNHPAARVIQGDANERGVQLALITEATRLGVEVGLGGPPCTHFSQAGKRETHEGWQCVLSMLLVHAAIPSLRMTVLENVLGFMSTPQWQHTLAAARALGFSFSHHVVTGDDCGLPTMRRRVFLVLTRG 489
            ME++CGAGG + G K ++ T LA+D S+ A  L+A NH    V+  + N+R  QL +I EA RLGVEV  GGPPCT FS +GKR + +G QC++SML V AA+ ++RM +LENV+GF+STP++Q TL  A+ LGF  SH+V++G+DCGLPT RRRVF++ TRG
Sbjct:  609 MELFCGAGGLSEGAKPFVHTVLASDISERACKLFASNHCGTTVMPANINDRSAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGLQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIMFTRG 771          
BLAST of jgi.p|Trimin1|140345 vs. uniprot
Match: A0A835Z6Y7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6Y7_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.460e-48
Identity = 99/163 (60.74%), Postives = 102/163 (62.58%), Query Frame = 1
Query:    1 MEMYCGAGGFTHGVKEYLDTALATDFSQSARALYARNHPAARVIQGDANERGVQLALITEATRLGVEVGLGGPPCTHFSQAGKRETHEGWQCVLSMLLVHAAIPSLRMTVLENVLGFMSTPQWQHTLAAARALGFSFSHHVVTGDDCGLPTMRRRVFLVLTRG 489
            MEMYCGAGGFTHG KEYL+T+LATDFSQSA ALYARNHPAARV+QGDANERGVQLALI EATRLGVE                                                       WQHTLAAARALGFSFSHHVV GDDCGLPTM RRVFLV TRG
Sbjct: 2331 MEMYCGAGGFTHGAKEYLNTSLATDFSQSACALYARNHPAARVLQGDANERGVQLALIAEATRLGVE-------------------------------------------------------WQHTLAAARALGFSFSHHVVRGDDCGLPTMWRRVFLVFTRG 2438          
BLAST of jgi.p|Trimin1|140345 vs. uniprot
Match: A0A835YXD3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXD3_9STRA)

HSP 1 Score: 176 bits (445), Expect = 6.880e-48
Identity = 98/163 (60.12%), Postives = 99/163 (60.74%), Query Frame = 1
Query:    1 MEMYCGAGGFTHGVKEYLDTALATDFSQSARALYARNHPAARVIQGDANERGVQLALITEATRLGVEVGLGGPPCTHFSQAGKRETHEGWQCVLSMLLVHAAIPSLRMTVLENVLGFMSTPQWQHTLAAARALGFSFSHHVVTGDDCGLPTMRRRVFLVLTRG 489
            MEMYCGAGGFTHG KEYLDTALATDFSQSA A YARNHPAARVIQGDANER VQLALI EATRLGVE                                                       WQHTL AAR LGFSFSHHV+ GDDCGLPTMRRRVFLV TRG
Sbjct: 2223 MEMYCGAGGFTHGAKEYLDTALATDFSQSACARYARNHPAARVIQGDANERRVQLALIAEATRLGVE-------------------------------------------------------WQHTLGAARTLGFSFSHHVIRGDDCGLPTMRRRVFLVFTRG 2330          
BLAST of jgi.p|Trimin1|140345 vs. uniprot
Match: A0A835ZBI0_9STRA (S-adenosyl-L-methionine-dependent methyltransferase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBI0_9STRA)

HSP 1 Score: 167 bits (424), Expect = 3.930e-45
Identity = 81/156 (51.92%), Postives = 110/156 (70.51%), Query Frame = 1
Query:   22 GGFTHGVKEYLDTALATDFSQSARALYARNHPAARVIQGDANERGVQLALITEATRLGVEVGLGGPPCTHFSQAGKRETHEGWQCVLSMLLVHAAIPSLRMTVLENVLGFMSTPQWQHTLAAARALGFSFSHHVVTGDDCGLPTMRRRVFLVLTRG 489
            GG       ++ T LA+D S+ A  L+A NH    V+  + N+R  QL +I EA RLGVEV  GGPPCT FS +GKR + +G QC++SML V AA+ ++RM +LENV+GF+STP++Q  L  A+ LGF  SH+V++G+DCGLPT RRRVF++ TRG
Sbjct:  529 GGSARAQNRFVHTVLASDISERACKLFASNHCGTAVMPANINDRCAQLHIIAEARRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISMLQVSAAVSTVRMVLLENVVGFLSTPEFQQALDLAQGLGFDHSHNVISGNDCGLPTKRRRVFIMFTRG 684          
BLAST of jgi.p|Trimin1|140345 vs. uniprot
Match: A0A835YZF8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZF8_9STRA)

HSP 1 Score: 152 bits (383), Expect = 9.790e-40
Identity = 75/148 (50.68%), Postives = 104/148 (70.27%), Query Frame = 1
Query:    1 MEMYCGAGGFTHGVKEYLDTALATDFSQSARALYARNHPAARVIQGDANE--RGVQLALITEATRLGVEVGLGGPPCTHFSQAGKRETHEGWQCVLSMLLVHAAIPSLRMTVLENVLGFMSTPQWQHTLAAARALGFSFSHHVVTGDD 438
            ME++CGA G + G K ++DT LA+D  + A  L+A NH    V+  + N+  R  QL +I EA RLGVEV  GGPPCT FS +GKR + +G QC++S L V AAI ++RM +LENV+GF+STP++Q TL  A+ LGF  SH+V++G+D
Sbjct:   30 MELFCGAEGLSEGAKPFVDTVLASDICERACKLFASNHCGTTVMPANINDGHRSAQLHIIAEACRLGVEVSSGGPPCTDFSMSGKRCSQKGIQCIISKLQVSAAISTVRMVLLENVVGFLSTPEFQQTLDLAQGLGFDHSHNVISGND 177          
BLAST of jgi.p|Trimin1|140345 vs. uniprot
Match: R4TMW4_9CAUD (Cytosine-specific methyltransferase n=1 Tax=Halovirus HGTV-1 TaxID=1273749 RepID=R4TMW4_9CAUD)

HSP 1 Score: 75.1 bits (183), Expect = 4.860e-13
Identity = 53/173 (30.64%), Postives = 82/173 (47.40%), Query Frame = 1
Query:    1 MEMYCGAGGFTHGVKEYLDTALA-TDFSQSARALYARNHPAARVIQGDANERGVQLALITEATRLGVEVGLGGPPCTHFSQAGKRETHEGWQCVLSMLLVHAAIPSLRMTVLENVLGFMS---------TPQWQHTLAAARALGFSFSHHVVTGDDCGLPTMRRRVFLVLTRG 489
            ++++CGAGG +HG ++     LA  D    A   Y  NHP+  +          +L L  E     V+V +GGPPC  FS AG+R++ +    +++  L +         V+ENV+G +S          P + H     R++GF   H  +   + G+   RRRVF V TRG
Sbjct:   12 LDLFCGAGGLSHGFEQAGYRVLAGVDVWDDALETYRLNHPSVGLEVDMHTVEPSELPLSKEQ----VDVVIGGPPCKGFSLAGERDSDDERNQLVARFLDYVEYFEPATVVMENVVGILSMDLPGYDGSVPDYIHD--RLRSMGFETDHQTLDATNYGIAQTRRRVFFVGTRG 178          
BLAST of jgi.p|Trimin1|140345 vs. uniprot
Match: A0A2N3F906_9ACTN (Cytosine-specific methyltransferase n=1 Tax=Actinobacteria bacterium HGW-Actinobacteria-7 TaxID=2013652 RepID=A0A2N3F906_9ACTN)

HSP 1 Score: 74.3 bits (181), Expect = 1.090e-12
Identity = 54/168 (32.14%), Postives = 80/168 (47.62%), Query Frame = 1
Query:    1 MEMYCGAGGFTHGVKEY-LDTALATDFSQSARALYARNHPAARVIQGDANERGVQLALITEATRLGVEVGL--GGPPCTHFSQAGKRETHEGWQ-CVLSML--LVHAAIPSLRMTVLENVLGFMSTPQ---WQHTLAAARALGFSFSHHVVTGDDCGLPTMRRRVFLV 477
            ++++CGAGG THG+++   DTA A +F  +A   Y+RN P   +I GD            + +    EV L  GGPPC  FS AG +  H+  + C+ + +  +   A P+  M   ENV G  S       +  L     LG+     +V   D G P  RRR+ +V
Sbjct:    5 VDLFCGAGGLTHGLRQAGWDTAAAVEFDAAACLTYSRNFPEVHLIPGDIRA--------VDFSEFAYEVDLVAGGPPCQPFSVAGNQRAHDDPRDCIPAFVRAVSEMAPPAFMM---ENVAGLASRRHALYLEFVLRQLADLGYFVERQIVDAADYGAPQHRRRLIIV 161          
BLAST of jgi.p|Trimin1|140345 vs. uniprot
Match: A0A8G0UK06_9BURK (Cytosine-specific methyltransferase n=1 Tax=Diaphorobacter sp. MNS-0 TaxID=2866628 RepID=A0A8G0UK06_9BURK)

HSP 1 Score: 73.9 bits (180), Expect = 2.020e-12
Identity = 51/172 (29.65%), Postives = 84/172 (48.84%), Query Frame = 1
Query:    1 MEMYCGAGGFTHGVKEY-LDTALATDFSQSARALYARNHPAARVIQGDANERGVQLALITEATRLGVEVGLGGPPCTHFSQAGKRE---THEGWQCVLSMLLVHAAIPSLRMTVLENVLGFMS------TPQWQHTLAAARALGFSFSHHVVTGDDCGLPTMRRRVFLVLTR 486
            ++++ G GG + G+ +   +   A +  Q A   Y RNH    VIQ D   R +    + E  + GV++  GGPPC  FS +GKR+     E    V   + V  A+   ++ ++ENV GF +       P   +       LG+ F   V+   + G+P++RRR+F+V +R
Sbjct:    6 LDLFAGCGGLSLGLSQAGCEIVAAVEIDQWAADTYRRNHLGVEVIQADI--RSLDSGYLRERFKGGVDLIAGGPPCQGFSVSGKRQYGHIKEQNNLVEEFIRVVEAVEP-KVVLIENVSGFRTGHIKPGNPVMSYLKVELNRLGYEFDARVLQATEYGVPSLRRRIFVVGSR 174          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|140345 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YYY1_9STRA8.710e-116100.00S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A836CA60_9STRA6.930e-5552.83S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835YGJ9_9STRA6.150e-5354.60S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835Z6Y7_9STRA1.460e-4860.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YXD3_9STRA6.880e-4860.12Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZBI0_9STRA3.930e-4551.92S-adenosyl-L-methionine-dependent methyltransferas... [more]
A0A835YZF8_9STRA9.790e-4050.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
R4TMW4_9CAUD4.860e-1330.64Cytosine-specific methyltransferase n=1 Tax=Halovi... [more]
A0A2N3F906_9ACTN1.090e-1232.14Cytosine-specific methyltransferase n=1 Tax=Actino... [more]
A0A8G0UK06_9BURK2.020e-1229.65Cytosine-specific methyltransferase n=1 Tax=Diapho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_29contigContig_29:60548..61036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|140345|gw1.29.56.1
BRITEko00000,ko00001,ko00002,ko01000,ko02048,ko03032,ko03036
KEGG rclassRC00003,RC00332
KEGG ReactionR04858
KEGG ModuleM00035
KEGG Pathwayko00270,ko01100,ko05206,map00270,map01100,map05206
KEGG koko:K00558
EC2.1.1.37
Preferred namedcm
DescriptionCOG0270 Site-specific DNA methylase
COG categoryH
Max annot lvl29547|Epsilonproteobacteria
EggNOG OGsCOG0270@1|root,COG0270@2|Bacteria,1MV9H@1224|Proteobacteria,42SDU@68525|delta/epsilon subdivisions,2YPT6@29547|Epsilonproteobacteria
Evalue3.32e-16
Seed ortholog556267.HWAG_00342
Hectar predicted targeting categoryother localisation
TranscriptId140667
TrackFilteredModels1
ProteinId140345
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140345gene_9541Tribonema minus UTEX_B_3156 geneContig_29 60548..61036 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9541_1exon_9541_1Tribonema minus UTEX_B_3156 exonContig_29 60548..61036 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9541CDS_9541Tribonema minus UTEX_B_3156 CDSContig_29 60548..61036 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|140345Trimin1|140345|gw1.29.56.1Tribonema minus UTEX_B_3156 polypeptideContig_29 60548..61036 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9541 ID=mRNA_9541|Name=jgi.p|Trimin1|140345|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=489bp|location=Sequence derived from alignment at Contig_29:60548..61036- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGATGTACTGCGGAGCGGGGGGGTTCACGCACGGAGTCAAGGAGTA
CTTAGACACGGCTCTGGCTACGGACTTCAGCCAGAGCGCGCGCGCGCTTT
ACGCGCGCAATCACCCCGCGGCGCGGGTGATTCAGGGGGACGCCAACGAG
CGGGGGGTGCAGCTGGCGCTCATCACGGAGGCGACGCGGCTGGGGGTGGA
GGTGGGGCTTGGCGGGCCGCCCTGCACACATTTCAGCCAAGCAGGCAAGC
GGGAAACGCACGAGGGCTGGCAATGCGTGCTCAGCATGCTGCTGGTACAC
GCGGCGATTCCATCGCTGCGCATGACCGTTCTGGAGAACGTTCTTGGTTT
CATGTCCACGCCGCAATGGCAGCACACACTTGCTGCCGCGCGCGCGCTGG
GCTTCAGCTTCAGCCACCACGTCGTCACGGGCGACGATTGCGGCCTACCC
ACTATGCGGCGGCGCGTCTTCCTAGTGTTGACGCGGGGG
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protein sequence of jgi.p|Trimin1|140345

>Trimin1|140345|gw1.29.56.1 ID=Trimin1|140345|gw1.29.56.1|Name=jgi.p|Trimin1|140345|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=163bp
MEMYCGAGGFTHGVKEYLDTALATDFSQSARALYARNHPAARVIQGDANE
RGVQLALITEATRLGVEVGLGGPPCTHFSQAGKRETHEGWQCVLSMLLVH
AAIPSLRMTVLENVLGFMSTPQWQHTLAAARALGFSFSHHVVTGDDCGLP
TMRRRVFLVLTRG
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mRNA from alignment at Contig_29:60548..61036-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9541 ID=mRNA_9541|Name=jgi.p|Trimin1|140345|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=489bp|location=Sequence derived from alignment at Contig_29:60548..61036- (Tribonema minus UTEX_B_3156 )
ATGGAGATGTACTGCGGAGCGGGGGGGTTCACGCACGGAGTCAAGGAGTA CTTAGACACGGCTCTGGCTACGGACTTCAGCCAGAGCGCGCGCGCGCTTT ACGCGCGCAATCACCCCGCGGCGCGGGTGATTCAGGGGGACGCCAACGAG CGGGGGGTGCAGCTGGCGCTCATCACGGAGGCGACGCGGCTGGGGGTGGA GGTGGGGCTTGGCGGGCCGCCCTGCACACATTTCAGCCAAGCAGGCAAGC GGGAAACGCACGAGGGCTGGCAATGCGTGCTCAGCATGCTGCTGGTACAC GCGGCGATTCCATCGCTGCGCATGACCGTTCTGGAGAACGTTCTTGGTTT CATGTCCACGCCGCAATGGCAGCACACACTTGCTGCCGCGCGCGCGCTGG GCTTCAGCTTCAGCCACCACGTCGTCACGGGCGACGATTGCGGCCTACCC ACTATGCGGCGGCGCGTCTTCCTAGTGTTGACGCGGGGG
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Coding sequence (CDS) from alignment at Contig_29:60548..61036-

>mRNA_9541 ID=mRNA_9541|Name=jgi.p|Trimin1|140345|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=489bp|location=Sequence derived from alignment at Contig_29:60548..61036- (Tribonema minus UTEX_B_3156 )
ATGGAGATGTACTGCGGAGCGGGGGGGTTCACGCACGGAGTCAAGGAGTA
CTTAGACACGGCTCTGGCTACGGACTTCAGCCAGAGCGCGCGCGCGCTTT
ACGCGCGCAATCACCCCGCGGCGCGGGTGATTCAGGGGGACGCCAACGAG
CGGGGGGTGCAGCTGGCGCTCATCACGGAGGCGACGCGGCTGGGGGTGGA
GGTGGGGCTTGGCGGGCCGCCCTGCACACATTTCAGCCAAGCAGGCAAGC
GGGAAACGCACGAGGGCTGGCAATGCGTGCTCAGCATGCTGCTGGTACAC
GCGGCGATTCCATCGCTGCGCATGACCGTTCTGGAGAACGTTCTTGGTTT
CATGTCCACGCCGCAATGGCAGCACACACTTGCTGCCGCGCGCGCGCTGG
GCTTCAGCTTCAGCCACCACGTCGTCACGGGCGACGATTGCGGCCTACCC
ACTATGCGGCGGCGCGTCTTCCTAGTGTTGACGCGGGGG
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