mRNA_954 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156646
Unique NamemRNA_954
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|156646 vs. uniprot
Match: A0A835ZL03_9STRA (DEAD/DEAH box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL03_9STRA)

HSP 1 Score: 449 bits (1155), Expect = 1.310e-159
Identity = 225/225 (100.00%), Postives = 225/225 (100.00%), Query Frame = 1 
Query:    1 RFYKHQAVGINAVVAGQHLAISTATSSGKSVVFTVPVLQALLTGEPNAVALFVFPTKALAQDQLRSMRALLAADDHLNAAITCGCLDGDTPFAERCNIAETADIILTNPDMLHASVLPAHKRWARLLGRLRFVVLDEAHVYRGVFGAHVSMVMRRLLRVCTLYGDGVSHAAKRQRARLPQFITCSATMASPREHFGALLPLEKCLGGSTRLCCVTQDTSPQGSKT 675
            RFYKHQAVGINAVVAGQHLAISTATSSGKSVVFTVPVLQALLTGEPNAVALFVFPTKALAQDQLRSMRALLAADDHLNAAITCGCLDGDTPFAERCNIAETADIILTNPDMLHASVLPAHKRWARLLGRLRFVVLDEAHVYRGVFGAHVSMVMRRLLRVCTLYGDGVSHAAKRQRARLPQFITCSATMASPREHFGALLPLEKCLGGSTRLCCVTQDTSPQGSKT
Sbjct:    1 RFYKHQAVGINAVVAGQHLAISTATSSGKSVVFTVPVLQALLTGEPNAVALFVFPTKALAQDQLRSMRALLAADDHLNAAITCGCLDGDTPFAERCNIAETADIILTNPDMLHASVLPAHKRWARLLGRLRFVVLDEAHVYRGVFGAHVSMVMRRLLRVCTLYGDGVSHAAKRQRARLPQFITCSATMASPREHFGALLPLEKCLGGSTRLCCVTQDTSPQGSKT 225
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BLAST of jgi.p|Trimin1|156646 vs. uniprot
Match: A0A6H5KP27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP27_9PHAE)

HSP 1 Score: 245 bits (626), Expect = 3.380e-71
Identity = 128/225 (56.89%), Postives = 163/225 (72.44%), Query Frame = 1 
Query:    1 RFYKHQAVGINAVVAGQHLAISTATSSGKSVVFTVPVLQALLTGEPNAVALFVFPTKALAQDQLRSMRALLAADDHLNAAITCGCLDGDTPFAERCNIAETADIILTNPDMLHASVLPAHKRWARLLGRLRFVVLDEAHVYRGVFGAHVSMVMRRLLRVCTLYGDGVSHAAKRQRARLPQFITCSATMASPREHFGALLPLEKCLGGSTRLCCVTQDTSPQGSKT 675
            R +KHQA+ I+A  AG+H+A+STATSSGKSVVF V V++A++   P+AVAL++FPTKALAQDQLRS++ L+ A  +L+  +    LDGDTPF ER  + + A+IILTNPDMLHASVLP HK++ R+LG L  VV+DEAHVYRG FGAHVSMV+RRLLR+ ++                PQFI CSATM+S   HF +LLPLE+CLGG   L   + DT+P   KT
Sbjct:  336 RLFKHQALAIDAAAAGRHVALSTATSSGKSVVFNVSVIEAIVGPRPDAVALYLFPTKALAQDQLRSLKGLVGASPYLSERVRPMTLDGDTPFRERGAVVDEANIILTNPDMLHASVLPGHKKFRRILGNLSHVVIDEAHVYRGAFGAHVSMVLRRLLRLWSVNA---------LPGPPPQFICCSATMSSAPSHFASLLPLEECLGGRRNLYLGSVDTAPSSRKT 551
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BLAST of jgi.p|Trimin1|156646 vs. uniprot
Match: F2TYE6_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TYE6_SALR5)

HSP 1 Score: 221 bits (564), Expect = 6.610e-63
Identity = 116/224 (51.79%), Postives = 153/224 (68.30%), Query Frame = 1 
Query:    1 RFYKHQAVGINAVVAGQHLAISTATSSGKSVVFTVPVLQALLTGEPNAVALFVFPTKALAQDQLRSMRALLAADDHLNAAITCGCLDGDTPFAERCNIAETADIILTNPDMLHASVLPAHKRWARLLGRLRFVVLDEAHVYRGVFGAHVSMVMRRLLRVCTLYGDGVSHAAKRQRARLPQFITCSATMASPREHFGALLPLEKCLGGSTRLCCVTQDTSPQGSK 672
            R + HQA G+NA   G H+ ISTATSSGKS+V+ +P ++ALL+   N VAL++FPTKALAQDQLRS+R  + A   L  A+   CLD DTP   R ++   A+IILTNPD+LHA++LP H+ W R+   LRFVV+DEAH+YRG FG+HVS+V+RRLLR+C  YG+              QFI  +AT+A+PR+HFG L+PL       +R+C V  D SP GS+
Sbjct:  309 RLFSHQAEGVNAARDGAHVMISTATSSGKSLVYHLPTMEALLSDPHNTVALYIFPTKALAQDQLRSLREFVGAG-WLGDAVRADCLDADTPARAREDVKSAANIILTNPDLLHATLLPRHRDWHRIFRSLRFVVIDEAHMYRGAFGSHVSLVIRRLLRICRHYGN-----------TSVQFICSTATLANPRQHFGQLIPL--IYPHRSRVCVVDNDGSPSGSR 518
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BLAST of jgi.p|Trimin1|156646 vs. uniprot
Match: A0A5A8EQ68_CAFRO (Uncharacterized protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EQ68_CAFRO)

HSP 1 Score: 202 bits (513), Expect = 1.170e-57
Identity = 106/200 (53.00%), Postives = 139/200 (69.50%), Query Frame = 1 
Query:    1 RFYKHQAVGINAVVAGQHLAISTATSSGKSVVFTVPVLQALLTGEPNAVALFVFPTKALAQDQLRSMRALLAADDHLNAAITCGCLDGDTPFAERCNIAETADIILTNPDMLHASVLPAHKRWARLLGRLRFVVLDEAHVYRGVFGAHVSMVMRRLLRVCTLYGDGVSHAAKRQRARLPQFITCSATMASPREHFGALLP 600
            +F++HQ++ I+A +AG+H+ IST+TSSGKS+VF+VPV   LL  +  AVA+ +FPTKALAQDQLR++R        L +A+    LDGD+  AER      A++ILTNPDMLHASVLP H +W R+L  L FVVLDE+H YRGVFG HV+MV+RRL+R+C  YG              P+F  CSAT+A+P EHF  L+P
Sbjct:   10 KFFEHQSLAIDAALAGKHVVISTSTSSGKSLVFSVPVFDRLLR-DRAAVAILIFPTKALAQDQLRAVREFCRGSATLASAVRAATLDGDSSPAEREAACLGANLILTNPDMLHASVLPRHSQWKRVLSSLAFVVLDESHSYRGVFGTHVAMVLRRLVRLCRRYGAD------------PRFFCCSATIANPAEHFAQLVP 196
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BLAST of jgi.p|Trimin1|156646 vs. uniprot
Match: X1NNF7_9ZZZZ (Helicase ATP-binding domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X1NNF7_9ZZZZ)

HSP 1 Score: 192 bits (488), Expect = 1.700e-57
Identity = 104/224 (46.43%), Postives = 146/224 (65.18%), Query Frame = 1 
Query:    7 YKHQAVGINAVVAGQHLAISTATSSGKSVVFTVPVLQALLTGEPNAVALFVFPTKALAQDQLRSMRALLAADDHLNAAITCGCLDGDTPFAERCNIAETADIILTNPDMLHASVLPAHKRWARLLGRLRFVVLDEAHVYRGVFGAHVSMVMRRLLRVCTLYGDGVSHAAKRQRARLPQFITCSATMASPREHFGAL--LPLEKCLGGSTRLCCVTQDTSPQGSK 672
            Y HQA  +NA+ AG+++ ++T ++SGK++ + +  L+A+L G+  + A+++FPTKALAQDQLRS++ +   +     A+     DGDTP AER NI + A ++LTNPDMLH  VLP H+ W RLL +L++VV+DEAHVYRGVFG+H++ V+RRL R+C LYG              PQFI CSAT+A+P+EH   L  LP E           V +D SP G K
Sbjct:   55 YSHQAEALNAIFAGKNVIVATPSASGKTLCYHLATLEAIL-GDKGSRAVYIFPTKALAQDQLRSLKEIACPELLSERAVAT--FDGDTPQAERANIKKQARVVLTNPDMLHLGVLPHHQSWFRLLRQLKYVVIDEAHVYRGVFGSHMANVLRRLRRLCALYGSN------------PQFICCSATIANPKEHAQNLVGLPFE----------AVARDGSPHGEK 253
[Close]
BLAST of jgi.p|Trimin1|156646 vs. uniprot
Match: A0A7V2CKQ6_9BACT (DEAD/DEAH box helicase (Fragment) n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7V2CKQ6_9BACT)

HSP 1 Score: 194 bits (494), Expect = 1.940e-57
Identity = 108/224 (48.21%), Postives = 148/224 (66.07%), Query Frame = 1 
Query:    7 YKHQAVGINAVVAGQHLAISTATSSGKSVVFTVPVLQALLTGEPNAVALFVFPTKALAQDQLRSMRALLAADDHLNAAITCGCLDGDTPFAERCNIAETADIILTNPDMLHASVLPAHKRWARLLGRLRFVVLDEAHVYRGVFGAHVSMVMRRLLRVCTLYGDGVSHAAKRQRARLPQFITCSATMASPREHFGAL--LPLEKCLGGSTRLCCVTQDTSPQGSK 672
            Y HQA  I+A+ AG+++ + T T+SGK++ + +PVLQ+LL   P A AL++FPTKALAQDQL +++ L AAD  L+  +     DGDTP ++R  I E+A+I+L+NPDMLH  +LP H RWA  L RLR+VV+DE H YRG+FG+HV+ V+RRL RVC  YG           AR P+F+ CSAT+A+P EH   L  LP+E           + +D SP+G K
Sbjct:   57 YLHQARAIDALAAGRNVVVVTGTASGKTMCYNLPVLQSLLES-PEARALYLFPTKALAQDQLGTLKRLAAADLILSGTVRPATYDGDTPNSQRRRIRESANIVLSNPDMLHQGILPYHGRWATFLARLRYVVIDEVHAYRGIFGSHVAGVLRRLRRVCEHYG-----------AR-PRFVCCSATIANPGEHAARLTGLPVE----------VIDEDGSPRGRK 257
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BLAST of jgi.p|Trimin1|156646 vs. uniprot
Match: A0A024UWK1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UWK1_9STRA)

HSP 1 Score: 202 bits (513), Expect = 5.940e-57
Identity = 107/236 (45.34%), Postives = 152/236 (64.41%), Query Frame = 1 
Query:    1 RFYKHQAVGINAVVAGQHLAISTATSSGKSVVFTVPVLQALLTGEPNAVALFVFPTKALAQDQLRSMRALLAADDHLNAAITCGCLDGDTPFAERCNIAETADIILTNPDMLHASVLPAHKRWARLLGRLRFVVLDEAHVYRGVFGAHVSMVMRRLLRVCTLYGDGVSHAAKRQRARLPQFITCSATMASPREHFGALLPLEKCLGGSTRLCCVT------------QDTSPQGSK 672
            + Y HQ+  I A++ GQH+ IST+TSSGKS+V+++PV  +L+T +  A +LF+FPTKALAQDQ++S R+ L   + L+ +I C   DGDT  A R ++  +A +ILTNPDMLH S+LP HK W  +L RL+++V+DEAH+YRG+FG+HV+ V+RRL R+C LYG              PQ + CSA++ +PREHFG L+P +     +     V             QD SP G+K
Sbjct:  225 KLYSHQSDAIAALLEGQHVVISTSTSSGKSMVYSIPVAHSLVTSQ--ATSLFLFPTKALAQDQVQSFRSFLGRCNGLDPSI-CATYDGDTAMAARSSVRSSARVILTNPDMLHVSILPQHKVWRTVLSRLKYIVVDEAHMYRGIFGSHVANVLRRLFRLCYLYGSN------------PQVVCCSASIQNPREHFGWLVPQQSLCSTADNPSAVQVCSRGVAVLEPEQDGSPCGAK 445
[Close]
BLAST of jgi.p|Trimin1|156646 vs. uniprot
Match: A0A5A8CYB9_CAFRO (Uncharacterized protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CYB9_CAFRO)

HSP 1 Score: 202 bits (515), Expect = 6.910e-57
Identity = 106/201 (52.74%), Postives = 140/201 (69.65%), Query Frame = 1 
Query:    1 RFYKHQAVGINAVVAGQHLAISTATSSGKSVVFTVPVLQALLTGEPNAVALFVFPTKALAQDQLRSMRALLAADDHLNAAITCGCLDGDTPFAERCNIAETADIILTNPDMLHASVLPAHKRWARLLGRLRFVVLDEAHVYRGVFGAHVSMVMRRLLRVCTLYGDGVSHAAKRQRARLPQFITCSATMASPREHFGALLPL 603
            +F++HQ++ I+A +AG+H+ IST+TSSGKS+VF+VPV   LL  +  AVA+ +FPTKALAQDQLR++R        L +A+    LDGD+  AER      A++ILTNPDMLHASVLP H +W R+L  L FVVLDE+H YRGVFG HV+MV+RRL+R+C  YG              P+F  CSAT+A+P EHF  L+P+
Sbjct:  260 KFFEHQSLAIDAALAGKHVVISTSTSSGKSLVFSVPVFDRLLR-DRAAVAILIFPTKALAQDQLRAVREFCRGSATLASAVRAATLDGDSSPAEREAACLGANLILTNPDMLHASVLPRHSQWKRVLSSLAFVVLDESHSYRGVFGTHVAMVLRRLVRLCRRYGAD------------PRFFCCSATIANPAEHFAQLVPI 447
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BLAST of jgi.p|Trimin1|156646 vs. uniprot
Match: A0A524ANR3_9CHLR (DEAD/DEAH box helicase (Fragment) n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A524ANR3_9CHLR)

HSP 1 Score: 191 bits (484), Expect = 1.660e-56
Identity = 102/227 (44.93%), Postives = 146/227 (64.32%), Query Frame = 1 
Query:    7 YKHQAVGINAVVAGQHLAISTATSSGKSVVFTVPVLQALLTGEPNAVALFVFPTKALAQDQLRSMRALLAADDHLNAAITCGCL---DGDTPFAERCNIAETADIILTNPDMLHASVLPAHKRWARLLGRLRFVVLDEAHVYRGVFGAHVSMVMRRLLRVCTLYGDGVSHAAKRQRARLPQFITCSATMASPREHFGAL--LPLEKCLGGSTRLCCVTQDTSPQGSK 672
            Y HQA  +NA++AG+++ I+T ++SGK++ + +  L ALL  + +  AL++FPTKALAQDQLRS++ +L     L+  ++ G +   DGDTP  ER NI + A+I+LTNPDMLH  +LP H+ W+RL   L++VV+DE H+YRGVFG+HV+ V+RRL R+C+ YG              PQFI CSAT+A+P EH   +  LP E           + +D SP G K
Sbjct:   57 YSHQAKALNAILAGKNVIIATPSASGKTLCYHLATLDALLHNKDSR-ALYIFPTKALAQDQLRSLKQILGETKELSQLLSPGAVATFDGDTPQNERANIRKRANIVLTNPDMLHLGILPNHQSWSRLFRNLKYVVIDETHIYRGVFGSHVANVLRRLRRLCSAYGSS------------PQFICCSATIANPEEHAQNIVGLPFES----------IVEDGSPHGEK 260
[Close]
BLAST of jgi.p|Trimin1|156646 vs. uniprot
Match: A0A024UUW9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UUW9_9STRA)

HSP 1 Score: 202 bits (513), Expect = 3.110e-56
Identity = 107/236 (45.34%), Postives = 152/236 (64.41%), Query Frame = 1 
Query:    1 RFYKHQAVGINAVVAGQHLAISTATSSGKSVVFTVPVLQALLTGEPNAVALFVFPTKALAQDQLRSMRALLAADDHLNAAITCGCLDGDTPFAERCNIAETADIILTNPDMLHASVLPAHKRWARLLGRLRFVVLDEAHVYRGVFGAHVSMVMRRLLRVCTLYGDGVSHAAKRQRARLPQFITCSATMASPREHFGALLPLEKCLGGSTRLCCVT------------QDTSPQGSK 672
            + Y HQ+  I A++ GQH+ IST+TSSGKS+V+++PV  +L+T +  A +LF+FPTKALAQDQ++S R+ L   + L+ +I C   DGDT  A R ++  +A +ILTNPDMLH S+LP HK W  +L RL+++V+DEAH+YRG+FG+HV+ V+RRL R+C LYG              PQ + CSA++ +PREHFG L+P +     +     V             QD SP G+K
Sbjct:  225 KLYSHQSDAIAALLEGQHVVISTSTSSGKSMVYSIPVAHSLVTSQ--ATSLFLFPTKALAQDQVQSFRSFLGRCNGLDPSI-CATYDGDTAMAARSSVRSSARVILTNPDMLHVSILPQHKVWRTVLSRLKYIVVDEAHMYRGIFGSHVANVLRRLFRLCYLYGSN------------PQVVCCSASIQNPREHFGWLVPQQSLCSTADNPSAVQVCSRGVAVLEPEQDGSPCGAK 445
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156646 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZL03_9STRA1.310e-159100.00DEAD/DEAH box helicase n=1 Tax=Tribonema minus Tax... [more]
A0A6H5KP27_9PHAE3.380e-7156.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F2TYE6_SALR56.610e-6351.79Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A5A8EQ68_CAFRO1.170e-5753.00Uncharacterized protein n=1 Tax=Cafeteria roenberg... [more]
X1NNF7_9ZZZZ1.700e-5746.43Helicase ATP-binding domain-containing protein (Fr... [more]
A0A7V2CKQ6_9BACT1.940e-5748.21DEAD/DEAH box helicase (Fragment) n=1 Tax=Phycisph... [more]
A0A024UWK1_9STRA5.940e-5745.34Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A5A8CYB9_CAFRO6.910e-5752.74Uncharacterized protein n=3 Tax=Cafeteria roenberg... [more]
A0A524ANR3_9CHLR1.660e-5644.93DEAD/DEAH box helicase (Fragment) n=1 Tax=Dehaloco... [more]
A0A024UUW9_9STRA3.110e-5645.34Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_1contigContig_1:223889..225573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156646|e_gw1.1.276.1
BRITEko00000
KEGG koko:K06877
GOsGO:0000166,GO:0000217,GO:0000405,GO:0000733,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003724,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010501,GO:0016043,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0030554,GO:0031974,GO:0031981,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0034641,GO:0034644,GO:0035639,GO:0035861,GO:0036094,GO:0036297,GO:0042623,GO:0043138,GO:0043140,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051276,GO:0051716,GO:0070013,GO:0070035,GO:0070914,GO:0071103,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0090304,GO:0090734,GO:0097159,GO:0097367,GO:0104004,GO:0140097,GO:0140098,GO:1901255,GO:1901265,GO:1901360,GO:1901363
Preferred nameHRQ1
DescriptionATP-dependent 3'-5' DNA helicase activity
COG categoryA
Max annot lvl33154|Opisthokonta
EggNOG OGsCOG1205@1|root,KOG4150@2759|Eukaryota,38FJG@33154|Opisthokonta
Evalue1.08e-63
Seed ortholog946362.XP_004997578.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHelicase, C-terminal
Ec32 orthologEc-27_002550.1
TranscriptId156968
TrackFilteredModels1
ProteinId156646
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156646gene_954Tribonema minus UTEX_B_3156 geneContig_1 223889..225573 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_954_1exon_954_1Tribonema minus UTEX_B_3156 exonContig_1 223889..224077 +
exon_954_2exon_954_2Tribonema minus UTEX_B_3156 exonContig_1 224353..224588 +
exon_954_3exon_954_3Tribonema minus UTEX_B_3156 exonContig_1 225321..225573 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_954CDS_954Tribonema minus UTEX_B_3156 CDSContig_1 223889..224077 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156646Trimin1|156646|e_gw1.1.276.1Tribonema minus UTEX_B_3156 polypeptideContig_1 223889..225573 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_954 ID=mRNA_954|Name=jgi.p|Trimin1|156646|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=678bp|location=Sequence derived from alignment at Contig_1:223889..225573+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCTTCTACAAGCACCAGGCCGTGGGCATCAACGCCGTGGTTGCGGGGCA
GCACCTGGCCATCTCCACCGCGACCAGCAGCGGCAAGAGCGTGGTGTTCA
CGGTGCCCGTGCTGCAGGCGCTGCTGACGGGCGAGCCGAACGCGGTGGCG
CTGTTTGTGTTCCCCACCAAGGCGCTGGCGCAGGACCAGCTGCGCTCAAT
GCGCGCGCTGCTGGCGGCGGACGACCACCTCAACGCTGCCATCACCTGCG
GCTGCCTGGACGGCGACACGCCCTTTGCTGAGCGCTGCAACATCGCGGAG
ACCGCAGACATCATACTCACCAACCCCGACATGCTGCACGCGTCGGTGCT
GCCGGCGCACAAGCGCTGGGCGCGCCTGCTGGGGCGGCTGCGCTTTGTGG
TGCTGGATGAGGCCCACGTGTACAGGGGCGTGTTTGGCGCGCACGTGTCC
ATGGTGATGCGGCGCCTGCTGCGCGTGTGCACGCTGTATGGCGACGGCGT
GTCGCACGCCGCCAAGCGCCAGCGCGCACGCCTGCCGCAGTTCATAACCT
GCAGCGCCACCATGGCCAGCCCCAGGGAGCACTTCGGAGCGCTGCTGCCT
TTGGAGAAGTGCCTCGGGGGCAGCACTCGGCTGTGCTGCGTGACGCAGGA
CACGTCACCGCAGGGCAGCAAGACGTGA
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protein sequence of jgi.p|Trimin1|156646

>Trimin1|156646|e_gw1.1.276.1 ID=Trimin1|156646|e_gw1.1.276.1|Name=jgi.p|Trimin1|156646|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=226bp
RFYKHQAVGINAVVAGQHLAISTATSSGKSVVFTVPVLQALLTGEPNAVA
LFVFPTKALAQDQLRSMRALLAADDHLNAAITCGCLDGDTPFAERCNIAE
TADIILTNPDMLHASVLPAHKRWARLLGRLRFVVLDEAHVYRGVFGAHVS
MVMRRLLRVCTLYGDGVSHAAKRQRARLPQFITCSATMASPREHFGALLP
LEKCLGGSTRLCCVTQDTSPQGSKT*
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mRNA from alignment at Contig_1:223889..225573+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_954 ID=mRNA_954|Name=jgi.p|Trimin1|156646|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1685bp|location=Sequence derived from alignment at Contig_1:223889..225573+ (Tribonema minus UTEX_B_3156 )
CGCTTCTACAAGCACCAGGCCGTGGGCATCAACGCCGTGGTTGCGGGGCA
GCACCTGGCCATCTCCACCGCGACCAGCAGCGGCAAGAGCGTGGTGTTCA
CGGTGCCCGTGCTGCAGGCGCTGCTGACGGGCGAGCCGAACGCGGTGGCG
CTGTTTGTGTTCCCCACCAAGGCGCTGGCGCAGGACCAGGTGCGTGCGCG
CGTCCGTGCGCCGACTGCAATATGCGGAACCCGACGATTGTGTGATTGGC
GCAAGCGCTTGCTGACGTGCGGCATCGCAGAGTTGGCAGAGCGGTTACAC
CTCAACACTGGCATCGCCTCCAACTGCGTGAACGGCAACGCGCCAGTTGC
TTCCCACTGCTGTTACCGCTCTTTGTTGACGAATCTCAGTGTTGCAGCAG
CGCCACTAAGCTCTTCGCTCCTGCTGTACGTCACCCCATGCATACATACC
TCCCGCACGTGCAGCTGCGCTCAATGCGCGCGCTGCTGGCGGCGGACGAC
CACCTCAACGCTGCCATCACCTGCGGCTGCCTGGACGGCGACACGCCCTT
TGCTGAGCGCTGCAACATCGCGGAGACCGCAGACATCATACTCACCAACC
CCGACATGCTGCACGCGTCGGTGCTGCCGGCGCACAAGCGCTGGGCGCGC
CTGCTGGGGCGGCTGCGCTTTGTGGTGCTGGATGAGGCCCACGTGTACAG
GTGACTGCTCATGTGAACTGCTTCCGTGTACAGGTGACTGTTCACATGAG
CTGCTCCCGTGTACAGGTGACTGTTCACTGTTCACACGCACTGCTCCCGT
GTTCAGGTGACTGTTCACATGAACTGCTCACGTGGACAGGTGATTGTCCA
CGTGTACTGCTCCCGTGTACAGGTGACTGTTCACTTGTACTGCTGCTCAC
GAGTACAGGTGACTGTTCACATGTGCTGCTCCCGTGTACTGGTGACTGTT
CACATGAACTGCTTCCGTGTACAGGTGACTACAGATGCACATGTTGCTTG
TCCGGCTTGATCAAGGGATAGTGCTGAGAACCTACTTGGCGCAAGTGTGG
TAGTTTGAGGGGTTGAAGCGATGGGCAGGTATTAGATTCAACCGCGCCGA
CCGGTTCGCTGCTGCAGCGGTATGTATACCCCATGCCATCTCGTGATAGG
GCAAGGATGTCGTATAAGCACAGCAAGTTACACTGGCATACTTCCATGCC
CTACAAACGCCTGTCGTCCATCCGCCCAGCCTGCTCATCAATCTCTCTGA
TCACCCCTCCTGCCAGGGGCGTCTTCGACGCGCACGTGTCCATGGTGATG
CTTCACCCTTTTTTACATGCAATCTACATCTCAGTATATATACTTGAATG
CTTCTATACCTTACAGACCGCCTGTCGCCCCTCCATTCACCCTGCTGGTC
GATATCTCTCCAATCACTGCTGCTTCTGCCAGGGGCGTGTTTGGCGCGCA
CGTGTCCATGGTGATGCGGCGCCTGCTGCGCGTGTGCACGCTGTATGGCG
ACGGCGTGTCGCACGCCGCCAAGCGCCAGCGCGCACGCCTGCCGCAGTTC
ATAACCTGCAGCGCCACCATGGCCAGCCCCAGGGAGCACTTCGGAGCGCT
GCTGCCTTTGGAGAAGTGCCTCGGGGGCAGCACTCGGCTGTGCTGCGTGA
CGCAGGACACGTCACCGCAGGGCAGCAAGACGTGA
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Coding sequence (CDS) from alignment at Contig_1:223889..225573+

>mRNA_954 ID=mRNA_954|Name=jgi.p|Trimin1|156646|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=678bp|location=Sequence derived from alignment at Contig_1:223889..225573+ (Tribonema minus UTEX_B_3156 )
CGCTTCTACAAGCACCAGGCCGTGGGCATCAACGCCGTGGTTGCGGGGCA
GCACCTGGCCATCTCCACCGCGACCAGCAGCGGCAAGAGCGTGGTGTTCA
CGGTGCCCGTGCTGCAGGCGCTGCTGACGGGCGAGCCGAACGCGGTGGCG
CTGTTTGTGTTCCCCACCAAGGCGCTGGCGCAGGACCAGCTGCGCTCAAT
GCGCGCGCTGCTGGCGGCGGACGACCACCTCAACGCTGCCATCACCTGCG
GCTGCCTGGACGGCGACACGCCCTTTGCTGAGCGCTGCAACATCGCGGAG
ACCGCAGACATCATACTCACCAACCCCGACATGCTGCACGCGTCGGTGCT
GCCGGCGCACAAGCGCTGGGCGCGCCTGCTGGGGCGGCTGCGCTTTGTGG
TGCTGGATGAGGCCCACGTGTACAGGGGCGTGTTTGGCGCGCACGTGTCC
ATGGTGATGCGGCGCCTGCTGCGCGTGTGCACGCTGTATGGCGACGGCGT
GTCGCACGCCGCCAAGCGCCAGCGCGCACGCCTGCCGCAGTTCATAACCT
GCAGCGCCACCATGGCCAGCCCCAGGGAGCACTTCGGAGCGCTGCTGCCT
TTGGAGAAGTGCCTCGGGGGCAGCACTCGGCTGTGCTGCGTGACGCAGGA
CACGTCACCGCAGGGCAGCAAGACGTGA
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