mRNA_9539 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|164093
Unique NamemRNA_9539
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|164093 vs. uniprot
Match: A0A836CEZ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEZ3_9STRA)

HSP 1 Score: 137 bits (345), Expect = 5.010e-37
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 1 
Query:    1 MLQISTSARIQHAANPCPDSSTXXXXXXXXXSCAHASTDPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPSSXXXXXXXXXXXXXXXXXXXXTDSCADFSNHSSTDPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTYRDHLCSNRWGLVKRCSVHLLNPAAFGCRMG 630
            MLQISTSARIQHAANPCPDSSTXXXXXXXXXSCAHASTDPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPSSXXXXXXXXXXXXXXXXXXXXTDSCADFSNHSSTDPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTYRDHLCSNRWGLVKRCSVHLLNPAAFGCRMG
Sbjct:    1 MLQISTSARIQHAANPCPDSSTXXXXXXXXXSCAHASTDPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNPSSXXXXXXXXXXXXXXXXXXXXTDSCADFSNHSSTDPCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTYRDHLCSNRWGLVKRCSVHLLNPAAFGCRMG 210
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|164093 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CEZ3_9STRA5.010e-37100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_29contigContig_29:18989..19621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|164093|e_gw1.29.27.1
Hectar predicted targeting categoryother localisation
TranscriptId164415
TrackFilteredModels1
ProteinId164093
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164093gene_9539Tribonema minus UTEX_B_3156 geneContig_29 18989..19621 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9539_1exon_9539_1Tribonema minus UTEX_B_3156 exonContig_29 18989..19621 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9539CDS_9539Tribonema minus UTEX_B_3156 CDSContig_29 18989..19621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|164093Trimin1|164093|e_gw1.29.27.1Tribonema minus UTEX_B_3156 polypeptideContig_29 18989..19621 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9539 ID=mRNA_9539|Name=jgi.p|Trimin1|164093|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=633bp|location=Sequence derived from alignment at Contig_29:18989..19621- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCCAAATCTCCACGTCTGCACGAATACAACACGCAGCCAACCCCTG
CCCCGACTCCAGCACCGACTCCAGCACCCACTCCAGCACCCACTCCTGCG
CCCACGCCAGCACCGACCCCTGCCCCGACTCCAGCACCAACCCCTGCGCC
CACTTCAGCACAGACTCCTGCGCCGACTTCAGCACCGACTCCTGCGCCCA
CTCCAGCACAGACTCCTGCGCCGACTTCAGCACCAACCCCTCCAGCACAG
ACTCCTGCGCCAACTTTAGCACAGACTCCTGCGCCCACGCCAGCACCGAC
CCCTGCACAGACTCCTGCGCCGACTTCAGCAACCACTCCAGCACCGACCC
CTGCAACCACGCCAGCACCGACCCCTGCGACCACGCCAGCACCGACCCCT
GCGACCACGCCAGCACCGACCCCTGCGACCACGCCAGCACCGACCCCTGC
GACCACTCCAGCACCGACCCCTGCGACCACTCCAGCACCGACCCCTGCGA
CCACTCCAGCACCGACCCCTATGCCCACTCCTGCACCTATAGGGACCACC
TCTGCTCCAACAGGTGGGGGCTGGTGAAGCGCTGCAGCGTCCATTTGTTG
AACCCCGCTGCTTTTGGCTGTCGTATGGGCTAG
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protein sequence of jgi.p|Trimin1|164093

>Trimin1|164093|e_gw1.29.27.1 ID=Trimin1|164093|e_gw1.29.27.1|Name=jgi.p|Trimin1|164093|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=211bp
MLQISTSARIQHAANPCPDSSTDSSTHSSTHSCAHASTDPCPDSSTNPCA
HFSTDSCADFSTDSCAHSSTDSCADFSTNPSSTDSCANFSTDSCAHASTD
PCTDSCADFSNHSSTDPCNHASTDPCDHASTDPCDHASTDPCDHASTDPC
DHSSTDPCDHSSTDPCDHSSTDPYAHSCTYRDHLCSNRWGLVKRCSVHLL
NPAAFGCRMG*
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mRNA from alignment at Contig_29:18989..19621-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9539 ID=mRNA_9539|Name=jgi.p|Trimin1|164093|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=633bp|location=Sequence derived from alignment at Contig_29:18989..19621- (Tribonema minus UTEX_B_3156 )
ATGCTCCAAATCTCCACGTCTGCACGAATACAACACGCAGCCAACCCCTG
CCCCGACTCCAGCACCGACTCCAGCACCCACTCCAGCACCCACTCCTGCG
CCCACGCCAGCACCGACCCCTGCCCCGACTCCAGCACCAACCCCTGCGCC
CACTTCAGCACAGACTCCTGCGCCGACTTCAGCACCGACTCCTGCGCCCA
CTCCAGCACAGACTCCTGCGCCGACTTCAGCACCAACCCCTCCAGCACAG
ACTCCTGCGCCAACTTTAGCACAGACTCCTGCGCCCACGCCAGCACCGAC
CCCTGCACAGACTCCTGCGCCGACTTCAGCAACCACTCCAGCACCGACCC
CTGCAACCACGCCAGCACCGACCCCTGCGACCACGCCAGCACCGACCCCT
GCGACCACGCCAGCACCGACCCCTGCGACCACGCCAGCACCGACCCCTGC
GACCACTCCAGCACCGACCCCTGCGACCACTCCAGCACCGACCCCTGCGA
CCACTCCAGCACCGACCCCTATGCCCACTCCTGCACCTATAGGGACCACC
TCTGCTCCAACAGGTGGGGGCTGGTGAAGCGCTGCAGCGTCCATTTGTTG
AACCCCGCTGCTTTTGGCTGTCGTATGGGCTAG
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Coding sequence (CDS) from alignment at Contig_29:18989..19621-

>mRNA_9539 ID=mRNA_9539|Name=jgi.p|Trimin1|164093|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=633bp|location=Sequence derived from alignment at Contig_29:18989..19621- (Tribonema minus UTEX_B_3156 )
ATGCTCCAAATCTCCACGTCTGCACGAATACAACACGCAGCCAACCCCTG
CCCCGACTCCAGCACCGACTCCAGCACCCACTCCAGCACCCACTCCTGCG
CCCACGCCAGCACCGACCCCTGCCCCGACTCCAGCACCAACCCCTGCGCC
CACTTCAGCACAGACTCCTGCGCCGACTTCAGCACCGACTCCTGCGCCCA
CTCCAGCACAGACTCCTGCGCCGACTTCAGCACCAACCCCTCCAGCACAG
ACTCCTGCGCCAACTTTAGCACAGACTCCTGCGCCCACGCCAGCACCGAC
CCCTGCACAGACTCCTGCGCCGACTTCAGCAACCACTCCAGCACCGACCC
CTGCAACCACGCCAGCACCGACCCCTGCGACCACGCCAGCACCGACCCCT
GCGACCACGCCAGCACCGACCCCTGCGACCACGCCAGCACCGACCCCTGC
GACCACTCCAGCACCGACCCCTGCGACCACTCCAGCACCGACCCCTGCGA
CCACTCCAGCACCGACCCCTATGCCCACTCCTGCACCTATAGGGACCACC
TCTGCTCCAACAGGTGGGGGCTGGTGAAGCGCTGCAGCGTCCATTTGTTG
AACCCCGCTGCTTTTGGCTGTCGTATGGGCTAG
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