mRNA_9536 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173761
Unique NamemRNA_9536
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|173761 vs. uniprot
Match: A0A835ZHF7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHF7_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.860e-26
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1 
Query:    1 AQGSTQFCIAHGGGRRCTHPGCTKGARDRFXXXXXXXXXXXXXXXXXXASLFFLCRATAAVGGSSLXXXXXXXXXXXXXXXXKSAQSSTPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHNQQHPDG 456
            AQGSTQFCIAHGGGRRCTHPGCTKGARDRFXXXXXXXXXXXXXXXXXXASLFFLCRATAAVGGSSLXXXXXXXXXXXXXXXXKSAQSSTPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHNQQHPDG
Sbjct:    1 AQGSTQFCIAHGGGRRCTHPGCTKGARDRFXXXXXXXXXXXXXXXXXXASLFFLCRATAAVGGSSLXXXXXXXXXXXXXXXXKSAQSSTPFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHNQQHPDG 152
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BLAST of jgi.p|Trimin1|173761 vs. uniprot
Match: A0A7S2KTT1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KTT1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 4.240e-8
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:    1 AQGSTQFCIAHGGGRRCTHPGCTKGARDRF 90
            AQG T+FCIAHGGGRRCT PGC KGARD+F
Sbjct:    1 AQGPTRFCIAHGGGRRCTFPGCDKGARDKF 30
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BLAST of jgi.p|Trimin1|173761 vs. uniprot
Match: A0A6H5L6T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6T1_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 5.730e-8
Identity = 25/30 (83.33%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    1 AQGSTQFCIAHGGGRRCTHPGCTKGARDRF 90
            +QG+T+ CIAHGGGRRCTHPGC KGARDRF
Sbjct: 1151 SQGNTRLCIAHGGGRRCTHPGCNKGARDRF 1180
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173761 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZHF7_9STRA1.860e-26100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7S2KTT1_9STRA4.240e-883.33Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A6H5L6T1_9PHAE5.730e-883.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_106contigContig_106:503699..507911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173761|e_gw1.106.35.1
Hectar predicted targeting categoryother localisation
TranscriptId174083
TrackFilteredModels1
ProteinId173761
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173761gene_9536Tribonema minus UTEX_B_3156 geneContig_106 503699..507911 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173761Trimin1|173761|e_gw1.106.35.1Tribonema minus UTEX_B_3156 polypeptideContig_106 503699..507911 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9536_5exon_9536_5Tribonema minus UTEX_B_3156 exonContig_106 503699..503836 -
exon_9536_4exon_9536_4Tribonema minus UTEX_B_3156 exonContig_106 504342..504491 -
exon_9536_3exon_9536_3Tribonema minus UTEX_B_3156 exonContig_106 506046..506120 -
exon_9536_2exon_9536_2Tribonema minus UTEX_B_3156 exonContig_106 506797..506898 -
exon_9536_1exon_9536_1Tribonema minus UTEX_B_3156 exonContig_106 507840..507911 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9536CDS_9536Tribonema minus UTEX_B_3156 CDSContig_106 507840..507911 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9536 ID=mRNA_9536|Name=jgi.p|Trimin1|173761|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=537bp|location=Sequence derived from alignment at Contig_106:503699..507911- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGCAGGGCAGCACGCAGTTCTGCATCGCGCACGGCGGCGGGCGGCGCTG
CACGCACCCGGGCTGCACCAAGGGCGCTCGGGATCGCTTCTTCTGCGCAG
CGCACGGCGGCGGCAAACGCTGCAGCATGTCCTCCTGCACCAAGGCAAGT
CTTTTTTTTTTATGTCGCGCAACCGCGGCGGTGGGCGGCAGCTCCCTGTG
CACCGCGCACGGCGGCGGCAAGCGCTGCACCGCTCCCGGCTGCTCCAAGA
GCGCGCAGAGCTCGACGCCATTCTGCGTGAAGCACGGCGGCGGGCGGCTA
TGCGAGCGTGCGGGGTGCGAGAAGGTCGCGCGCGGGCGCACGCGCTTCTG
CGCAGCCCACGGCGGCGGCATCCGCTGCCGCATGGAGCGCTGCAATAGGG
CCGCGGTGGGCAAGCTGCAGCTCTGCCGCGTTCACAACCAGCAGCACCCG
GATGGTGGCGGTGGCGGAGGCTCAGCTGCATCTGGCGGCGGCGGCGGGGG
TTCAGCGGGAGCCGGCGGTGGCGGCGAAAGCGCATGA
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protein sequence of jgi.p|Trimin1|173761

>Trimin1|173761|e_gw1.106.35.1 ID=Trimin1|173761|e_gw1.106.35.1|Name=jgi.p|Trimin1|173761|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=179bp
AQGSTQFCIAHGGGRRCTHPGCTKGARDRFFCAAHGGGKRCSMSSCTKAS
LFFLCRATAAVGGSSLCTAHGGGKRCTAPGCSKSAQSSTPFCVKHGGGRL
CERAGCEKVARGRTRFCAAHGGGIRCRMERCNRAAVGKLQLCRVHNQQHP
DGGGGGGSAASGGGGGGSAGAGGGGESA*
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mRNA from alignment at Contig_106:503699..507911-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9536 ID=mRNA_9536|Name=jgi.p|Trimin1|173761|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4213bp|location=Sequence derived from alignment at Contig_106:503699..507911- (Tribonema minus UTEX_B_3156 )
GCGCAGGGCAGCACGCAGTTCTGCATCGCGCACGGCGGCGGGCGGCGCTG
CACGCACCCGGGCTGCACCAAGGTGAGCGCCGCGCAGAGCGCTGCCATCG
AGCCCGCCTGCGCCTAGGGTTAGAGTTAGGGTTAAAACTAGGGCTCGCGC
GCCTAGAATTAGGGCTGCAGAGTGCTCTGCTCACAAGCGCAGAATACGCG
ATGGGAACTGCGTGCGTCGATGATGCTCAACGCCATGCGCGCGCAGTGTC
TGTCACACTGCAAGGCGCAATTCAATGCTGTGGGGGACAAACACGACACG
TTTCTGCACAGGGTCAGAGAGGTCACGTGCTCACATGAGCGACAGACGTC
ACACAAGCAGGTAGGTAGCACAGCGGCACTCATGCGCTATGCACTGCGGA
AAGGCACCGCGGTGAGCACTGCCACACGGCTGCAAGGGGCGTGCAGCGCT
ATCAGACGCGATTGGCGGCCGTCACTACTAGCACAGCTGATAGGTGGCAG
TCACAACGCGCCCGCACCGCGTGTAGGTTCAGGAGTGCTGCGTGCCTCGA
TGATTTTTGTTCATGTTGAGAAATACAGTATTTGAAGGCGTCATGCCGAT
GATGCGCTCTGCACGCTGAGCGAAACCGGCGCTTACAGTACAACCATTTG
CTGGTGAAGAAAGCGAGGTTTGCCTGTCTGCGAGATGCACAGAACGCTGC
GTGTTGGCATGTGCCTTGATGCGTCATGGTGATGTCATACGCATCTTTGA
CGCTCCGCACTTGCTTGCCCGGCGATGCATAATGAATGAAGCGCGTGCCA
GAAGTGAACGGGAAGGATTTTCGGCATAGGCTCGACTCTGACGCCACATG
CAATGGCTTGAAAGGACGCCACCAGGGGGCGTGCAGGTGCCAGCAGTCAT
GCGCGTGTCTGTCGGTGCTGGTCATTGCGCCCCCATATATATACTTCAAG
AAGTATATACTTTGAAGTATGCACTTTTGACGATGCGTATTGCGCTTCCA
TGATCTGGGGCAGGGCGCTCGGGATCGCTTCTTCTGCGCAGCGCACGGCG
GCGGCAAACGCTGCAGCATGTCCTCCTGCACCAAGGCAAGTCTTTTTTTT
TTATGTCGCGCAACCGTATACGCGAAGCAGGACGTGGTTAAGGGACTACT
TGATTTCAACATCCTTGCAATTAGTTGCCCCAGCGTGCTAGAGGTAATGT
GCGGTATGCTGCTAGCATTAACGAGTTTTGGCGATGTGTGCAGCCCTGCC
GGTCGAGCGATGCTCGCCGCTGAGCACTGCTTCAAAACGCGGTTGAGCAC
GGTTGAGCTGCTGCAGGTGCATTCGCCCCTGGCAGACGTTATTATCGGGC
TGAACCGCAGCAGCTGATGTTCACATTTGCTGCATCAATAGCAGCAGGTT
GAGCGCTGCTGCTGCGCGCCGCACATTTGATGCGAATTGGTGCCCTCACC
GTCCACATGCCGACTTGTCTGCCTGCGTCGTTTACGTTAAGCAACTCTTC
GGGAAACGCGCTTCACAGTGATGCACTGTCGCGCTGCACCGTGCTGCTGT
CGTGCAGCTGCTGCATTCGCCCCTGACAGACATGGCAGCGAGCTTAGGGC
TTAGGATGACTAGTAGGGGTATGTAGATGAGTGAAGCACTCAAACCTCTG
AGCGCTGTCGCGTCGCTCCACACATTCGATGCGACTTGGTGTCCACAATG
CCGACGTGTCTGCCTGAATCATTTTGATAACTCTGCTGCGGGAAAGTGGC
TACATTTTGACGAATCGTCGCGCCACGCTGTGCTGCTGCAGGCGGCGGTG
GGCGGCAGCTCCCTGTGCACCGCGCACGGCGGCGGCAAGCGCTGCACCGC
TCCCGGCTGCTCCAAGGTGGGTGTCATCACGGCCTGCACACACAGCCAGC
AGTTGCTCATGCAGCTTCTCGAGGGGCATTTTTGTGGCATGTGCGTGCCG
ACCATGATTGCGACTGCGATTTCCTAGGAGAGTCACCACTTGAACGTCAC
TTTTCGCGCATTGCAGCGGGCCGTGCACGCCTCAGGTATGTCACCATAAG
TTGAAGTCAAGCACAAAACGGGCCGTGGTCAAAGGATTTGAATGCCATTC
TGGCACTGTGTCCCGTGCTGCGCGCGTTGGTCTGGCAGCACTGCACTGGG
TTGCTGTGTCAGCGGATTATTTGCTGCGCATGTTCAGGCATGTCACATCT
TGAGCTTGAGTTGACGCTCAAAGGTGCTAGCAGTTGTGGTGACCTTGCTG
TCGTCAAGGAGCGCTGCCATACCGTCCTGCGTACAGCTCAGCAGGCACCA
GCTGCCGAGTGCCTGCTTTGCGCGGCGGGCATTGCCAGGCGCAATTGCAT
CGCATGCAACTGCAACTGTAAACTTCAACTGTTGACAATCTGGCACGATC
TTCGCCCACAGCACAGTCCGGTAAGGGACCTTGCCAACCCTGGGTTGCGG
AGGTCCTAGAGGTCTGCACAATTACTGCCCGTCTTGCACTCCGCACGTGG
ACATGCTAGTCCGCACAGCGCGCAGAGCTCCACGCCATTCTGCGGGAAGC
ACGGCGGCGCGCGCACCGTCATGACTGCGCTCCTTTCAACTTCAAGTGAT
GAAGTATATCACAAATCTCTGCCCGTCTCACACACCGCATGCGTCTCTGC
CCGTCTCACACACCTAGGGTTGCCAAAACGCTATTATTGAAAAAATACGG
TCAACGGTATTTGTAGCGTAAACCATGCTGATCTTGACCACAGCGTCGGG
TGCCCTGAGGTTTATCTTCGGGCTTACTGTGCCAGACGAAAGAATGGTAT
TGAAGATCTCCAAAACCTCAATAGGCAGGAGTTTACGGTCAAATTACGGT
ACGATTTACGGAGTATACTTGTAAAAAAGGTACGGTTTTGGCAACCCTAC
TGTGACACACCGCATGCGGACGCCGCTCCCGCCGCCCCCTCGCTTTTGCA
AAGCCCGCAAAGCTTCATGTCGTTCTTCGTCAAGCACAGTCACTTGCACA
GTTGCGCCCCTTAACTGCAACTGTTGAAGTTGTGACACGATCTCTGCCAC
ATCAAACCCAGATGTCACGCTCCGCACGCGCACACCGCTCCCACCGCCCT
CTGGCACCTCACAGAGCGCGCAGAGCTCCATGCCGTTCTGCGTCAAGTTC
AAGTGTTGAAGTTCATCTCAAATCTCTGCTTGTCTCACACTCTGTGCACG
TGACGTGCACAGCGCGCAAAGCTTGACACCGCTGCAAGTTCAAGTGTTGG
AGTTCATCCCAAAGTCTCTGCTTGTCTCAGTGCGCGTCGCTCTCGCACCT
TGCAGAGTGCGCAGAGCTCGACGCCGTTCTACATCAACTTCACGGGTTGA
AGTTTATATCACATCGCTGCCTGTCGTTTCACAACTGGACGCCGCTCTCG
CCGCCCTCTCGCCTTTGCAGAGCGCGCAGAGCTCGACGCCATTCTGCGTG
AAGCACGGCGGCGGGCGGCTATGCGAGCGTGCGGGGTGCGAGAAGGTCGC
GCGCGGGCGCACGCGCTTCTGCGCAGCCCACGGCGGCGGCATCCGCTGCC
GCATGGAGCGCTGCAATAGGGTGCGTGGGGGATCATTGTGCTGACAACCT
TCTTCAAAAAGCTGATGAAGAACTGATAAATTGTGCGGGTTGATGTTGGA
AGTAATGCTTTTAGAGGTGAGCAGTGCTGCATTGCGCACGGCGGCGACAT
CTGCTGCCGCGTGGAGCGCTGCAATAGGGTGTGTGGGGGATCACTATGTA
TACAACATATTGAAATACTTCAGATGGTGGACACTTCAGCATCGCTGCCG
TCTTGGAGCTAGCACATAGTGTCACAGCAGCAACACATCGCCGGTGCAGC
GGGCGCGCATGGAACGCATCGTGCTGTGCCCATTCGCAGGGCGCATGCAG
CTCCGCTCACTTTTGCAAGCCTGAAAAGGCGTTGAATCACGAGGCGCATG
CAAAAATCTGCCAGCGGCGGATAGCGCCGAGGCCCAAGCAAGCACCCCCG
CACATCATCGCTCGCTCTTACATGCGCCAATCATCGTGGCATTATCGCGC
GTTGTGCGCTGCCTCCCTGCTGCAGGCCGCGGTGGGCAAGCTGCAGCTCT
GCCGCGTTCACAACCAGCAGCACCCGGATGGTGGCGGTGGCGGAGGCTCA
GCTGCATCTGGCGGCGGCGGCGGGGGTTCAGCGGGAGCCGGCGGTGGCGG
CGAAAGCGCATGA
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Coding sequence (CDS) from alignment at Contig_106:503699..507911-

>mRNA_9536 ID=mRNA_9536|Name=jgi.p|Trimin1|173761|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=537bp|location=Sequence derived from alignment at Contig_106:503699..507911- (Tribonema minus UTEX_B_3156 )
GCGCAGGGCAGCACGCAGTTCTGCATCGCGCACGGCGGCGGGCGGCGCTG
CACGCACCCGGGCTGCACCAAGGGCGCTCGGGATCGCTTCTTCTGCGCAG
CGCACGGCGGCGGCAAACGCTGCAGCATGTCCTCCTGCACCAAGGCAAGT
CTTTTTTTTTTATGTCGCGCAACCGCGGCGGTGGGCGGCAGCTCCCTGTG
CACCGCGCACGGCGGCGGCAAGCGCTGCACCGCTCCCGGCTGCTCCAAGA
GCGCGCAGAGCTCGACGCCATTCTGCGTGAAGCACGGCGGCGGGCGGCTA
TGCGAGCGTGCGGGGTGCGAGAAGGTCGCGCGCGGGCGCACGCGCTTCTG
CGCAGCCCACGGCGGCGGCATCCGCTGCCGCATGGAGCGCTGCAATAGGG
CCGCGGTGGGCAAGCTGCAGCTCTGCCGCGTTCACAACCAGCAGCACCCG
GATGGTGGCGGTGGCGGAGGCTCAGCTGCATCTGGCGGCGGCGGCGGGGG
TTCAGCGGGAGCCGGCGGTGGCGGCGAAAGCGCATGA
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