mRNA_9521 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|139433 vs. uniprot
Match: A0A835ZHE5_9STRA (HIT-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHE5_9STRA) HSP 1 Score: 110 bits (276), Expect = 3.590e-31 Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 Query: 1 RRVCLVCSRAVAPYICPRCHLPYCSAACYKKHGGACTEAFYKERVEGELA 150 RRVCLVCSRAVAPYICPRCHLPYCSAACYKKHGGACTEAFYKERVEGELA Sbjct: 1 RRVCLVCSRAVAPYICPRCHLPYCSAACYKKHGGACTEAFYKERVEGELA 50
BLAST of jgi.p|Trimin1|139433 vs. uniprot
Match: A0A1W0ACF6_9STRA (HIT-type domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ACF6_9STRA) HSP 1 Score: 68.6 bits (166), Expect = 2.730e-12 Identity = 30/48 (62.50%), Postives = 33/48 (68.75%), Query Frame = 1 Query: 4 RVCLVCSRAVAPYICPRCHLPYCSAACYKKHGGACTEAFYKERVEGEL 147 RVC VC + Y CPRC+L YC ACYKKHG ACTE FYK VE E+ Sbjct: 40 RVCGVCHEKESKYTCPRCNLVYCGVACYKKHGEACTEHFYKSHVESEM 87
BLAST of jgi.p|Trimin1|139433 vs. uniprot
Match: A0A7S1GBQ7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GBQ7_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 4.190e-12 Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1 Query: 4 RVCLVCSRAVAPYICPRCHLPYCSAACYKKHGGACTEAFYKERVEGELA 150 RVC VC A + Y CPRC + YCS ACY +HG ACTEAF++E V GE+A Sbjct: 53 RVCGVCREARSKYRCPRCLVAYCSVACYTRHGEACTEAFFREAVRGEMA 101
BLAST of jgi.p|Trimin1|139433 vs. uniprot
Match: K3WZF7_GLOUD (HIT-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZF7_GLOUD) HSP 1 Score: 65.9 bits (159), Expect = 2.700e-11 Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 1 Query: 4 RVCLVCSRAVAPYICPRCHLPYCSAACYKKHGGACTEAFYKERVEGEL 147 RVC +C++ A Y CPRC+ PYCS ACYK HG ACTE FY+ V + Sbjct: 48 RVCRICTQHTARYTCPRCNAPYCSVACYKHHGEACTEQFYETHVRDAM 95
BLAST of jgi.p|Trimin1|139433 vs. uniprot
Match: A0A196SA51_BLAHN (Zinc finger HIT domain-containing protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SA51_BLAHN) HSP 1 Score: 56.6 bits (135), Expect = 4.920e-8 Identity = 24/49 (48.98%), Postives = 30/49 (61.22%), Query Frame = 1 Query: 4 RVCLVCSRAVAPYICPRCHLPYCSAACYKKHGGACTEAFYKERVEGELA 150 R+C VC +A A YICP C + YCS CY H CTE FY+ V E++ Sbjct: 6 RLCAVCHKAPAKYICPSCKVAYCSKECYNNHNPKCTERFYERLVLDEMS 54
BLAST of jgi.p|Trimin1|139433 vs. uniprot
Match: A0A8J1YVS2_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1YVS2_9DINO) HSP 1 Score: 55.8 bits (133), Expect = 9.340e-8 Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1 Query: 25 RAVAPYICPRCHLPYCSAACYKKHGGACTEAFYKERVEGEL 147 RA+ Y CP+CH+ YCS ACY +H +CTE F++ +VE EL Sbjct: 182 RALGVYRCPKCHMRYCSVACYDQHSTSCTEQFFQAQVEEEL 222
BLAST of jgi.p|Trimin1|139433 vs. uniprot
Match: A0A401QL56_SCYTO (HIT-type domain-containing protein (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401QL56_SCYTO) HSP 1 Score: 52.8 bits (125), Expect = 2.580e-7 Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 1 Query: 28 AVAPYICPRCHLPYCSAACYKKHGG-ACTEAFYKERVEGEL 147 A A Y CPRC++P+CS CY+ G ACTEAFY++ V GEL Sbjct: 25 AAARYTCPRCNVPFCSLPCYRGPGHRACTEAFYRDAVLGEL 65
BLAST of jgi.p|Trimin1|139433 vs. uniprot
Match: A0A7S1XU53_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XU53_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 3.240e-7 Identity = 24/43 (55.81%), Postives = 28/43 (65.12%), Query Frame = 1 Query: 4 RVCLVCSRAVAPYICPRCHLPYCSAACYKKHGGACTEAFYKER 132 RVC VC+R A Y CPRC PYCS ACY++HGG E E+ Sbjct: 27 RVCRVCTRNEARYSCPRCAAPYCSVACYRRHGGGGAEPSVDEK 69
BLAST of jgi.p|Trimin1|139433 vs. uniprot
Match: A0A7R9JZM5_TIMGE (Hypothetical protein n=1 Tax=Timema genevievae TaxID=629358 RepID=A0A7R9JZM5_TIMGE) HSP 1 Score: 53.9 bits (128), Expect = 4.330e-7 Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 1 Query: 10 CLVCSRAVAPYICPRCHLPYCSAACYKKHGGA-CTEAFYKERVEGEL 147 C +C Y+CPRCHLPYCS CY+ C+E+FY+E V+ EL Sbjct: 4 CEICHEKPKSYVCPRCHLPYCSLTCYRSQQHLQCSESFYQEAVKEEL 50
BLAST of jgi.p|Trimin1|139433 vs. uniprot
Match: A0A1Y1W9K6_9FUNG (HIT-type domain-containing protein (Fragment) n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1W9K6_9FUNG) HSP 1 Score: 53.9 bits (128), Expect = 4.400e-7 Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 1 Query: 1 RRVCLVCSRAVAPYICPRCHLPYCSAACYK-KHGGACTEAFYKERVEGEL 147 R+ C +C + A Y CP+CH+ YCS ACY+ + CTE+FY+ +V EL Sbjct: 7 RKGCQICGKLRAKYSCPKCHIAYCSLACYRDQRHSECTESFYQAQVADEL 56 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|139433 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9521 ID=mRNA_9521|Name=jgi.p|Trimin1|139433|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=150bp|location=Sequence derived from alignment at Contig_106:376575..376724- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CGTCGCGTATGTCTGGTTTGCAGCAGGGCAGTCGCACCATACATCTGTCCback to top protein sequence of jgi.p|Trimin1|139433 >Trimin1|139433|gw1.106.18.1 ID=Trimin1|139433|gw1.106.18.1|Name=jgi.p|Trimin1|139433|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=50bp RRVCLVCSRAVAPYICPRCHLPYCSAACYKKHGGACTEAFYKERVEGELAback to top mRNA from alignment at Contig_106:376575..376724- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9521 ID=mRNA_9521|Name=jgi.p|Trimin1|139433|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=150bp|location=Sequence derived from alignment at Contig_106:376575..376724- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_106:376575..376724- >mRNA_9521 ID=mRNA_9521|Name=jgi.p|Trimin1|139433|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=150bp|location=Sequence derived from alignment at Contig_106:376575..376724- (Tribonema minus UTEX_B_3156 )back to top |