mRNA_9521 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|139433
Unique NamemRNA_9521
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|139433 vs. uniprot
Match: A0A835ZHE5_9STRA (HIT-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHE5_9STRA)

HSP 1 Score: 110 bits (276), Expect = 3.590e-31
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1
Query:    1 RRVCLVCSRAVAPYICPRCHLPYCSAACYKKHGGACTEAFYKERVEGELA 150
            RRVCLVCSRAVAPYICPRCHLPYCSAACYKKHGGACTEAFYKERVEGELA
Sbjct:    1 RRVCLVCSRAVAPYICPRCHLPYCSAACYKKHGGACTEAFYKERVEGELA 50          
BLAST of jgi.p|Trimin1|139433 vs. uniprot
Match: A0A1W0ACF6_9STRA (HIT-type domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0ACF6_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 2.730e-12
Identity = 30/48 (62.50%), Postives = 33/48 (68.75%), Query Frame = 1
Query:    4 RVCLVCSRAVAPYICPRCHLPYCSAACYKKHGGACTEAFYKERVEGEL 147
            RVC VC    + Y CPRC+L YC  ACYKKHG ACTE FYK  VE E+
Sbjct:   40 RVCGVCHEKESKYTCPRCNLVYCGVACYKKHGEACTEHFYKSHVESEM 87          
BLAST of jgi.p|Trimin1|139433 vs. uniprot
Match: A0A7S1GBQ7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GBQ7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.190e-12
Identity = 30/49 (61.22%), Postives = 36/49 (73.47%), Query Frame = 1
Query:    4 RVCLVCSRAVAPYICPRCHLPYCSAACYKKHGGACTEAFYKERVEGELA 150
            RVC VC  A + Y CPRC + YCS ACY +HG ACTEAF++E V GE+A
Sbjct:   53 RVCGVCREARSKYRCPRCLVAYCSVACYTRHGEACTEAFFREAVRGEMA 101          
BLAST of jgi.p|Trimin1|139433 vs. uniprot
Match: K3WZF7_GLOUD (HIT-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZF7_GLOUD)

HSP 1 Score: 65.9 bits (159), Expect = 2.700e-11
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 1
Query:    4 RVCLVCSRAVAPYICPRCHLPYCSAACYKKHGGACTEAFYKERVEGEL 147
            RVC +C++  A Y CPRC+ PYCS ACYK HG ACTE FY+  V   +
Sbjct:   48 RVCRICTQHTARYTCPRCNAPYCSVACYKHHGEACTEQFYETHVRDAM 95          
BLAST of jgi.p|Trimin1|139433 vs. uniprot
Match: A0A196SA51_BLAHN (Zinc finger HIT domain-containing protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SA51_BLAHN)

HSP 1 Score: 56.6 bits (135), Expect = 4.920e-8
Identity = 24/49 (48.98%), Postives = 30/49 (61.22%), Query Frame = 1
Query:    4 RVCLVCSRAVAPYICPRCHLPYCSAACYKKHGGACTEAFYKERVEGELA 150
            R+C VC +A A YICP C + YCS  CY  H   CTE FY+  V  E++
Sbjct:    6 RLCAVCHKAPAKYICPSCKVAYCSKECYNNHNPKCTERFYERLVLDEMS 54          
BLAST of jgi.p|Trimin1|139433 vs. uniprot
Match: A0A8J1YVS2_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1YVS2_9DINO)

HSP 1 Score: 55.8 bits (133), Expect = 9.340e-8
Identity = 22/41 (53.66%), Postives = 30/41 (73.17%), Query Frame = 1
Query:   25 RAVAPYICPRCHLPYCSAACYKKHGGACTEAFYKERVEGEL 147
            RA+  Y CP+CH+ YCS ACY +H  +CTE F++ +VE EL
Sbjct:  182 RALGVYRCPKCHMRYCSVACYDQHSTSCTEQFFQAQVEEEL 222          
BLAST of jgi.p|Trimin1|139433 vs. uniprot
Match: A0A401QL56_SCYTO (HIT-type domain-containing protein (Fragment) n=1 Tax=Scyliorhinus torazame TaxID=75743 RepID=A0A401QL56_SCYTO)

HSP 1 Score: 52.8 bits (125), Expect = 2.580e-7
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 1
Query:   28 AVAPYICPRCHLPYCSAACYKKHGG-ACTEAFYKERVEGEL 147
            A A Y CPRC++P+CS  CY+  G  ACTEAFY++ V GEL
Sbjct:   25 AAARYTCPRCNVPFCSLPCYRGPGHRACTEAFYRDAVLGEL 65          
BLAST of jgi.p|Trimin1|139433 vs. uniprot
Match: A0A7S1XU53_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XU53_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 3.240e-7
Identity = 24/43 (55.81%), Postives = 28/43 (65.12%), Query Frame = 1
Query:    4 RVCLVCSRAVAPYICPRCHLPYCSAACYKKHGGACTEAFYKER 132
            RVC VC+R  A Y CPRC  PYCS ACY++HGG   E    E+
Sbjct:   27 RVCRVCTRNEARYSCPRCAAPYCSVACYRRHGGGGAEPSVDEK 69          
BLAST of jgi.p|Trimin1|139433 vs. uniprot
Match: A0A7R9JZM5_TIMGE (Hypothetical protein n=1 Tax=Timema genevievae TaxID=629358 RepID=A0A7R9JZM5_TIMGE)

HSP 1 Score: 53.9 bits (128), Expect = 4.330e-7
Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 1
Query:   10 CLVCSRAVAPYICPRCHLPYCSAACYKKHGGA-CTEAFYKERVEGEL 147
            C +C      Y+CPRCHLPYCS  CY+      C+E+FY+E V+ EL
Sbjct:    4 CEICHEKPKSYVCPRCHLPYCSLTCYRSQQHLQCSESFYQEAVKEEL 50          
BLAST of jgi.p|Trimin1|139433 vs. uniprot
Match: A0A1Y1W9K6_9FUNG (HIT-type domain-containing protein (Fragment) n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1W9K6_9FUNG)

HSP 1 Score: 53.9 bits (128), Expect = 4.400e-7
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:    1 RRVCLVCSRAVAPYICPRCHLPYCSAACYK-KHGGACTEAFYKERVEGEL 147
            R+ C +C +  A Y CP+CH+ YCS ACY+ +    CTE+FY+ +V  EL
Sbjct:    7 RKGCQICGKLRAKYSCPKCHIAYCSLACYRDQRHSECTESFYQAQVADEL 56          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|139433 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A835ZHE5_9STRA3.590e-31100.00HIT-type domain-containing protein (Fragment) n=1 ... [more]
A0A1W0ACF6_9STRA2.730e-1262.50HIT-type domain-containing protein n=1 Tax=Thraust... [more]
A0A7S1GBQ7_9STRA4.190e-1261.22Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
K3WZF7_GLOUD2.700e-1156.25HIT-type domain-containing protein n=1 Tax=Globisp... [more]
A0A196SA51_BLAHN4.920e-848.98Zinc finger HIT domain-containing protein n=1 Tax=... [more]
A0A8J1YVS2_9DINO9.340e-853.66Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A401QL56_SCYTO2.580e-758.54HIT-type domain-containing protein (Fragment) n=1 ... [more]
A0A7S1XU53_9STRA3.240e-755.81Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9JZM5_TIMGE4.330e-748.94Hypothetical protein n=1 Tax=Timema genevievae Tax... [more]
A0A1Y1W9K6_9FUNG4.400e-746.00HIT-type domain-containing protein (Fragment) n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_106contigContig_106:376575..376724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|139433|gw1.106.18.1
DescriptionSource PGD
COG categoryU
Max annot lvl121069|Pythiales
EggNOG OGsCOG5411@1|root,KOG4317@1|root,KOG0565@2759|Eukaryota,KOG4317@2759|Eukaryota,1MEET@121069|Pythiales
Evalue1.76e-12
Seed ortholog36331.EPrPI00000020241
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId139755
TrackFilteredModels1
ProteinId139433
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|139433gene_9521Tribonema minus UTEX_B_3156 geneContig_106 376575..376724 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9521_1exon_9521_1Tribonema minus UTEX_B_3156 exonContig_106 376575..376724 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9521CDS_9521Tribonema minus UTEX_B_3156 CDSContig_106 376575..376724 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|139433Trimin1|139433|gw1.106.18.1Tribonema minus UTEX_B_3156 polypeptideContig_106 376575..376724 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9521 ID=mRNA_9521|Name=jgi.p|Trimin1|139433|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=150bp|location=Sequence derived from alignment at Contig_106:376575..376724- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGTCGCGTATGTCTGGTTTGCAGCAGGGCAGTCGCACCATACATCTGTCC
TCGGTGTCACTTGCCTTACTGCAGTGCAGCATGCTACAAAAAGCATGGCG
GCGCTTGCACGGAAGCTTTCTACAAGGAACGGGTGGAGGGTGAACTAGCC
back to top

protein sequence of jgi.p|Trimin1|139433

>Trimin1|139433|gw1.106.18.1 ID=Trimin1|139433|gw1.106.18.1|Name=jgi.p|Trimin1|139433|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=50bp
RRVCLVCSRAVAPYICPRCHLPYCSAACYKKHGGACTEAFYKERVEGELA
back to top

mRNA from alignment at Contig_106:376575..376724-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9521 ID=mRNA_9521|Name=jgi.p|Trimin1|139433|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=150bp|location=Sequence derived from alignment at Contig_106:376575..376724- (Tribonema minus UTEX_B_3156 )
CGTCGCGTATGTCTGGTTTGCAGCAGGGCAGTCGCACCATACATCTGTCC TCGGTGTCACTTGCCTTACTGCAGTGCAGCATGCTACAAAAAGCATGGCG GCGCTTGCACGGAAGCTTTCTACAAGGAACGGGTGGAGGGTGAACTAGCC
back to top

Coding sequence (CDS) from alignment at Contig_106:376575..376724-

>mRNA_9521 ID=mRNA_9521|Name=jgi.p|Trimin1|139433|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=150bp|location=Sequence derived from alignment at Contig_106:376575..376724- (Tribonema minus UTEX_B_3156 )
CGTCGCGTATGTCTGGTTTGCAGCAGGGCAGTCGCACCATACATCTGTCC
TCGGTGTCACTTGCCTTACTGCAGTGCAGCATGCTACAAAAAGCATGGCG
GCGCTTGCACGGAAGCTTTCTACAAGGAACGGGTGGAGGGTGAACTAGCC
back to top