mRNA_9493 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|151063
Unique NamemRNA_9493
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|151063 vs. uniprot
Match: A0A836CMN5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMN5_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 3.570e-19
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 QRLCSTGCGRRAALERPGEPGVLYCRQCGGAQAVDVTHAK 120
            QRLCSTGCGRRAALERPGEPGVLYCRQCGGAQAVDVTHAK
Sbjct:    1 QRLCSTGCGRRAALERPGEPGVLYCRQCGGAQAVDVTHAK 40
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151063 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CMN5_9STRA3.570e-19100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_106contigContig_106:101125..101676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|151063|gw1.106.73.1
Hectar predicted targeting categoryother localisation
TranscriptId151385
TrackFilteredModels1
ProteinId151063
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151063gene_9493Tribonema minus UTEX_B_3156 geneContig_106 101125..101676 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9493_1exon_9493_1Tribonema minus UTEX_B_3156 exonContig_106 101125..101676 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9493CDS_9493Tribonema minus UTEX_B_3156 CDSContig_106 101125..101676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151063Trimin1|151063|gw1.106.73.1Tribonema minus UTEX_B_3156 polypeptideContig_106 101125..101676 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9493 ID=mRNA_9493|Name=jgi.p|Trimin1|151063|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=552bp|location=Sequence derived from alignment at Contig_106:101125..101676+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCGTTTGTGTTCTACAGGCTGCGGCAGACGCGCCGCGTTGGAACGACC
AGGGGAGCCAGGCGTACTGTATTGTCGCCAATGCGGAGGTGCCCAGGCCG
TGGATGTCACACATGCAAAGTGCGCTGGAGGATGCGGGAAGCGCCCGCAC
TTCGAGAGACCTGGGGAGCCGGGTAACATCTATTGTCGCGCTTGTGGCGG
GGCTGGGGCTGTGGACGTCAAAAATGTGAAGTGTGCGGGTGGGTGTGGTA
AGACACCGTGCTTCGAGAGACCGGGGGAGCGAGGCGTCCTCTTTTGTCGC
AGTTGCGGTGGAGCAGATGCTGTGGACGTCAAAAATGTGAAGTGTGCGGG
TGGGTGTGGTAAGACACCGTGCTTCGAGAGACCGGGGGAGCGAGACATCC
TCTATTGTCGAGATTGCGGCGGAACCGAAGCTGTTGACGTTTCGCACATC
AAATGCGCCGGTGGATGTGGGACACGACCGAGCGTCGAGAAACCGGGGGA
GCCAGGAGTGCTATTTTGCCGCACATGCGGCGGCGAAGAAGCCATCAACG
TG
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protein sequence of jgi.p|Trimin1|151063

>Trimin1|151063|gw1.106.73.1 ID=Trimin1|151063|gw1.106.73.1|Name=jgi.p|Trimin1|151063|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=184bp
QRLCSTGCGRRAALERPGEPGVLYCRQCGGAQAVDVTHAKCAGGCGKRPH
FERPGEPGNIYCRACGGAGAVDVKNVKCAGGCGKTPCFERPGERGVLFCR
SCGGADAVDVKNVKCAGGCGKTPCFERPGERDILYCRDCGGTEAVDVSHI
KCAGGCGTRPSVEKPGEPGVLFCRTCGGEEAINV
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mRNA from alignment at Contig_106:101125..101676+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9493 ID=mRNA_9493|Name=jgi.p|Trimin1|151063|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=552bp|location=Sequence derived from alignment at Contig_106:101125..101676+ (Tribonema minus UTEX_B_3156 )
CAGCGTTTGTGTTCTACAGGCTGCGGCAGACGCGCCGCGTTGGAACGACC
AGGGGAGCCAGGCGTACTGTATTGTCGCCAATGCGGAGGTGCCCAGGCCG
TGGATGTCACACATGCAAAGTGCGCTGGAGGATGCGGGAAGCGCCCGCAC
TTCGAGAGACCTGGGGAGCCGGGTAACATCTATTGTCGCGCTTGTGGCGG
GGCTGGGGCTGTGGACGTCAAAAATGTGAAGTGTGCGGGTGGGTGTGGTA
AGACACCGTGCTTCGAGAGACCGGGGGAGCGAGGCGTCCTCTTTTGTCGC
AGTTGCGGTGGAGCAGATGCTGTGGACGTCAAAAATGTGAAGTGTGCGGG
TGGGTGTGGTAAGACACCGTGCTTCGAGAGACCGGGGGAGCGAGACATCC
TCTATTGTCGAGATTGCGGCGGAACCGAAGCTGTTGACGTTTCGCACATC
AAATGCGCCGGTGGATGTGGGACACGACCGAGCGTCGAGAAACCGGGGGA
GCCAGGAGTGCTATTTTGCCGCACATGCGGCGGCGAAGAAGCCATCAACG
TG
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Coding sequence (CDS) from alignment at Contig_106:101125..101676+

>mRNA_9493 ID=mRNA_9493|Name=jgi.p|Trimin1|151063|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=552bp|location=Sequence derived from alignment at Contig_106:101125..101676+ (Tribonema minus UTEX_B_3156 )
CAGCGTTTGTGTTCTACAGGCTGCGGCAGACGCGCCGCGTTGGAACGACC
AGGGGAGCCAGGCGTACTGTATTGTCGCCAATGCGGAGGTGCCCAGGCCG
TGGATGTCACACATGCAAAGTGCGCTGGAGGATGCGGGAAGCGCCCGCAC
TTCGAGAGACCTGGGGAGCCGGGTAACATCTATTGTCGCGCTTGTGGCGG
GGCTGGGGCTGTGGACGTCAAAAATGTGAAGTGTGCGGGTGGGTGTGGTA
AGACACCGTGCTTCGAGAGACCGGGGGAGCGAGGCGTCCTCTTTTGTCGC
AGTTGCGGTGGAGCAGATGCTGTGGACGTCAAAAATGTGAAGTGTGCGGG
TGGGTGTGGTAAGACACCGTGCTTCGAGAGACCGGGGGAGCGAGACATCC
TCTATTGTCGAGATTGCGGCGGAACCGAAGCTGTTGACGTTTCGCACATC
AAATGCGCCGGTGGATGTGGGACACGACCGAGCGTCGAGAAACCGGGGGA
GCCAGGAGTGCTATTTTGCCGCACATGCGGCGGCGAAGAAGCCATCAACG
TG
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