mRNA_9491 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|155143 vs. uniprot
Match: A0A835YZI4_9STRA (CCHC-type domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZI4_9STRA) HSP 1 Score: 242 bits (617), Expect = 3.350e-81 Identity = 112/115 (97.39%), Postives = 113/115 (98.26%), Query Frame = 1
Query: 1 VVYTLKLRGGKYYVGFTTNLPKRLEQHYTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMASHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLNCGDPTHFAADC 345
VVYTLKLRGGKYYVGFTTNLPKRLEQH+TGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMA HGLNNVRGGSYITARFTPEERRAIEKQLWGATDACL CGDPTHFAADC
Sbjct: 1 VVYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 115
BLAST of jgi.p|Trimin1|155143 vs. uniprot
Match: A0A835YSD6_9STRA (GIY-YIG domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSD6_9STRA) HSP 1 Score: 212 bits (539), Expect = 1.510e-68 Identity = 93/114 (81.58%), Postives = 105/114 (92.11%), Query Frame = 1
Query: 4 VYTLKLRGGKYYVGFTTNLPKRLEQHYTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMASHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLNCGDPTHFAADC 345
VYTLKLRGGK+YVGFT NLPKRLEQH+TGTD AMWTK+YPMERV++IEYNGNKF E T LMLMA HG++NVRGG+++TARFTP+ER+AIEKQLWGATDACL CGDPTHFA DC
Sbjct: 1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDC 114
BLAST of jgi.p|Trimin1|155143 vs. uniprot
Match: A0A3G5A8D2_9VIRU (GIY-YIG nuclease n=1 Tax=Hyperionvirus sp. TaxID=2487770 RepID=A0A3G5A8D2_9VIRU) HSP 1 Score: 96.3 bits (238), Expect = 2.280e-22 Identity = 48/114 (42.11%), Postives = 65/114 (57.02%), Query Frame = 1
Query: 4 VYTLKLRGGKYYVGFTTNLPKRLEQHYTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMASHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLNCGDPTHFAADC 345
+Y LKL GKYYVG T KR+E+H G+ WT+ Y V++I N + F E TL LM+ G+ NVRGGS+++ E+ ++I L A + C CG HFAADC
Sbjct: 3 IYLLKLEAGKYYVGRTNKEEKRIEEHIE-LFGSEWTRKYKYVEVMDIIKNADSFDEDKYTLKLMSEFGIENVRGGSFVSVTLNDEQIQSISLMLRNAENKCFKCGGIGHFAADC 115
BLAST of jgi.p|Trimin1|155143 vs. uniprot
Match: A0A6C0K9G4_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0K9G4_9ZZZZ) HSP 1 Score: 94.7 bits (234), Expect = 8.620e-22 Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = 1
Query: 4 VYTLKLRGGKYYVGFTTNLPKRLEQHYTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMASHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLNCGDPTHFAADC 345
+Y LKL+ GKYYVG TT+L +R ++H GT A WTK Y V N + F E T + M HG+ NVRG +Y +R +++++ A DAC+ CG HFA C
Sbjct: 6 IYILKLQSGKYYVGKTTDLERRKQEHINGTASA-WTKKYKPVSVEKTIPNASAFDEDKWTKIYMEKHGVENVRGAAYSQMELDEAQRETLQREIRSAKDACMKCGRSGHFAKSC 118
BLAST of jgi.p|Trimin1|155143 vs. uniprot
Match: A0A6C0JPV8_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JPV8_9ZZZZ) HSP 1 Score: 92.8 bits (229), Expect = 2.670e-21 Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 1
Query: 4 VYTLKLRGGKYYVGFTTNLPKRLEQHYTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMASHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLNCGDPTHFAADC 345
+Y L+L+GG+YYVG T ++ +R +QH G G+ WTK Y + N + F E M +G+ NVRGGSY++ + T E+ A++ ++ ATD C CG HFA +C
Sbjct: 5 IYILRLQGGRYYVGKTDDVDRRYQQHMKGY-GSAWTKKYSPICIAKQIPNASPFDEDRYVKEYMDIYGIQNVRGGSYVSIKLTEEQENALKLEIRAATDKCTRCGRDGHFAKNC 117
BLAST of jgi.p|Trimin1|155143 vs. uniprot
Match: A0A6C0DJP0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DJP0_9ZZZZ) HSP 1 Score: 92.4 bits (228), Expect = 4.640e-21 Identity = 43/114 (37.72%), Postives = 63/114 (55.26%), Query Frame = 1
Query: 4 VYTLKLRGGKYYVGFTTNLPKRLEQHYTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMASHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLNCGDPTHFAADC 345
+Y LKL+GGKYYVG ++++ R +QH G G+ WTK Y +V + E T M +G+ NVRGG+Y+T + ++K+LW A+D C CG H+A C
Sbjct: 6 IYVLKLQGGKYYVGKSSDVIGRFQQHMNG-QGSSWTKKYKPMSLVESRDGVSPLMEDMITKEYMVKYGIENVRGGAYVTEELDEVQEYNLQKELWAASDCCTECGRKGHWAKTC 118
BLAST of jgi.p|Trimin1|155143 vs. uniprot
Match: A0A6C0FCP6_9ZZZZ (CCHC-type domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0FCP6_9ZZZZ) HSP 1 Score: 90.9 bits (224), Expect = 7.450e-21 Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 1
Query: 4 VYTLKLRGGKYYVGFTTNLPKRLEQHYT--GTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMASHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLNCGDPTHFAADC 345
+Y L L KYYVG T N RL+ H+ +GA WT+ YP V I N + F E T M M HG++NVRGGSY+ ++ +EK+++ A ++C +CG HF A C
Sbjct: 4 IYILLLEQQKYYVGKTNNPIFRLKDHFHEGSKNGAAWTRKYPPLEVEKIIPNCDNFDEDKITKMYMKQHGIDNVRGGSYVKISLDEMQKLLLEKEIFTAENSCFHCGQKGHFIATC 119
BLAST of jgi.p|Trimin1|155143 vs. uniprot
Match: A0A6C0ASW7_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0ASW7_9ZZZZ) HSP 1 Score: 90.9 bits (224), Expect = 2.610e-20 Identity = 43/114 (37.72%), Postives = 65/114 (57.02%), Query Frame = 1
Query: 4 VYTLKLRGGKYYVGFTTNLPKRLEQHYTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMASHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLNCGDPTHFAADC 345
+YTL+L GGKYY+G T N RLE H+ ++G+ WTK Y R++ ++ N + + E T M +G+NNVRGGS+++ + +++ G D C C HFA DC
Sbjct: 4 IYTLQLEGGKYYIGKTNNPQFRLESHFN-SNGSEWTKLYKPIRILELKPNCDDYDEDKITRQYMDKYGINNVRGGSFVSIKLQKHTIDTLKQMRNGTNDKCFVCEKVGHFAKDC 116
BLAST of jgi.p|Trimin1|155143 vs. uniprot
Match: A0A6C0D289_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0D289_9ZZZZ) HSP 1 Score: 89.7 bits (221), Expect = 3.750e-20 Identity = 45/114 (39.47%), Postives = 65/114 (57.02%), Query Frame = 1
Query: 4 VYTLKLRGGKYYVGFTTNLPKRLEQHYTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMASHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLNCGDPTHFAADC 345
+Y L+L KYY+G TTN+ RLE HYT D A WT+ Y +V +I + +++ E TL M +G+NNVRGGS+ + + + + + TD C CGD HFA +C
Sbjct: 3 IYVLQLEQNKYYIGKTTNIAFRLEDHYTLNDAA-WTRKYTPIQVESIIADCDEYDEDKYTLKYMEKYGINNVRGGSFCEIKLSDANIITLNQIMNSVTDKCYICGDNGHFANEC 115
BLAST of jgi.p|Trimin1|155143 vs. uniprot
Match: A0A6C0HQA0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HQA0_9ZZZZ) HSP 1 Score: 87.8 bits (216), Expect = 4.830e-20 Identity = 41/114 (35.96%), Postives = 64/114 (56.14%), Query Frame = 1
Query: 4 VYTLKLRGGKYYVGFTTNLPKRLEQHYTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMASHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLNCGDPTHFAADC 345
+Y L+L GK+YVG T N RL+ H+ ++G+ WTK Y +++ + N + + E T M M +G++NVRGGS+++ + + + G D C NCG HFA DC
Sbjct: 4 IYILQLEKGKFYVGKTINPSFRLDSHFN-SNGSAWTKLYKPIKMIELIPNCDDYDEDKYTRMFMDKYGIDNVRGGSFVSVELEQSTKTHLTQMKNGTNDKCFNCGKSGHFAKDC 116 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155143 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9491 ID=mRNA_9491|Name=jgi.p|Trimin1|155143|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=345bp|location=Sequence derived from alignment at Contig_106:90482..90826+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTCGTGTACACACTGAAGCTGAGGGGGGGCAAATATTACGTGGGGTTCACback to top protein sequence of jgi.p|Trimin1|155143 >Trimin1|155143|gw1.106.93.1 ID=Trimin1|155143|gw1.106.93.1|Name=jgi.p|Trimin1|155143|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=115bp VVYTLKLRGGKYYVGFTTNLPKRLEQHYTGTDGAMWTKHYPMERVVNIEYback to top mRNA from alignment at Contig_106:90482..90826+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9491 ID=mRNA_9491|Name=jgi.p|Trimin1|155143|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=345bp|location=Sequence derived from alignment at Contig_106:90482..90826+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_106:90482..90826+ >mRNA_9491 ID=mRNA_9491|Name=jgi.p|Trimin1|155143|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=345bp|location=Sequence derived from alignment at Contig_106:90482..90826+ (Tribonema minus UTEX_B_3156 )back to top |