mRNA_9491 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155143
Unique NamemRNA_9491
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|155143 vs. uniprot
Match: A0A835YZI4_9STRA (CCHC-type domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZI4_9STRA)

HSP 1 Score: 242 bits (617), Expect = 3.350e-81
Identity = 112/115 (97.39%), Postives = 113/115 (98.26%), Query Frame = 1
Query:    1 VVYTLKLRGGKYYVGFTTNLPKRLEQHYTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMASHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLNCGDPTHFAADC 345
            VVYTLKLRGGKYYVGFTTNLPKRLEQH+TGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMA HGLNNVRGGSYITARFTPEERRAIEKQLWGATDACL CGDPTHFAADC
Sbjct:    1 VVYTLKLRGGKYYVGFTTNLPKRLEQHFTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMAIHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLKCGDPTHFAADC 115          
BLAST of jgi.p|Trimin1|155143 vs. uniprot
Match: A0A835YSD6_9STRA (GIY-YIG domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSD6_9STRA)

HSP 1 Score: 212 bits (539), Expect = 1.510e-68
Identity = 93/114 (81.58%), Postives = 105/114 (92.11%), Query Frame = 1
Query:    4 VYTLKLRGGKYYVGFTTNLPKRLEQHYTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMASHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLNCGDPTHFAADC 345
            VYTLKLRGGK+YVGFT NLPKRLEQH+TGTD AMWTK+YPMERV++IEYNGNKF E T  LMLMA HG++NVRGG+++TARFTP+ER+AIEKQLWGATDACL CGDPTHFA DC
Sbjct:    1 VYTLKLRGGKFYVGFTKNLPKRLEQHFTGTDSAMWTKYYPMERVIDIEYNGNKFMEGTKVLMLMALHGIDNVRGGAFVTARFTPDERQAIEKQLWGATDACLKCGDPTHFAVDC 114          
BLAST of jgi.p|Trimin1|155143 vs. uniprot
Match: A0A3G5A8D2_9VIRU (GIY-YIG nuclease n=1 Tax=Hyperionvirus sp. TaxID=2487770 RepID=A0A3G5A8D2_9VIRU)

HSP 1 Score: 96.3 bits (238), Expect = 2.280e-22
Identity = 48/114 (42.11%), Postives = 65/114 (57.02%), Query Frame = 1
Query:    4 VYTLKLRGGKYYVGFTTNLPKRLEQHYTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMASHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLNCGDPTHFAADC 345
            +Y LKL  GKYYVG T    KR+E+H     G+ WT+ Y    V++I  N + F E   TL LM+  G+ NVRGGS+++     E+ ++I   L  A + C  CG   HFAADC
Sbjct:    3 IYLLKLEAGKYYVGRTNKEEKRIEEHIE-LFGSEWTRKYKYVEVMDIIKNADSFDEDKYTLKLMSEFGIENVRGGSFVSVTLNDEQIQSISLMLRNAENKCFKCGGIGHFAADC 115          
BLAST of jgi.p|Trimin1|155143 vs. uniprot
Match: A0A6C0K9G4_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0K9G4_9ZZZZ)

HSP 1 Score: 94.7 bits (234), Expect = 8.620e-22
Identity = 46/114 (40.35%), Postives = 63/114 (55.26%), Query Frame = 1
Query:    4 VYTLKLRGGKYYVGFTTNLPKRLEQHYTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMASHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLNCGDPTHFAADC 345
            +Y LKL+ GKYYVG TT+L +R ++H  GT  A WTK Y    V     N + F E   T + M  HG+ NVRG +Y        +R  +++++  A DAC+ CG   HFA  C
Sbjct:    6 IYILKLQSGKYYVGKTTDLERRKQEHINGTASA-WTKKYKPVSVEKTIPNASAFDEDKWTKIYMEKHGVENVRGAAYSQMELDEAQRETLQREIRSAKDACMKCGRSGHFAKSC 118          
BLAST of jgi.p|Trimin1|155143 vs. uniprot
Match: A0A6C0JPV8_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0JPV8_9ZZZZ)

HSP 1 Score: 92.8 bits (229), Expect = 2.670e-21
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 1
Query:    4 VYTLKLRGGKYYVGFTTNLPKRLEQHYTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMASHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLNCGDPTHFAADC 345
            +Y L+L+GG+YYVG T ++ +R +QH  G  G+ WTK Y    +     N + F E       M  +G+ NVRGGSY++ + T E+  A++ ++  ATD C  CG   HFA +C
Sbjct:    5 IYILRLQGGRYYVGKTDDVDRRYQQHMKGY-GSAWTKKYSPICIAKQIPNASPFDEDRYVKEYMDIYGIQNVRGGSYVSIKLTEEQENALKLEIRAATDKCTRCGRDGHFAKNC 117          
BLAST of jgi.p|Trimin1|155143 vs. uniprot
Match: A0A6C0DJP0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0DJP0_9ZZZZ)

HSP 1 Score: 92.4 bits (228), Expect = 4.640e-21
Identity = 43/114 (37.72%), Postives = 63/114 (55.26%), Query Frame = 1
Query:    4 VYTLKLRGGKYYVGFTTNLPKRLEQHYTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMASHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLNCGDPTHFAADC 345
            +Y LKL+GGKYYVG ++++  R +QH  G  G+ WTK Y    +V      +   E   T   M  +G+ NVRGG+Y+T      +   ++K+LW A+D C  CG   H+A  C
Sbjct:    6 IYVLKLQGGKYYVGKSSDVIGRFQQHMNG-QGSSWTKKYKPMSLVESRDGVSPLMEDMITKEYMVKYGIENVRGGAYVTEELDEVQEYNLQKELWAASDCCTECGRKGHWAKTC 118          
BLAST of jgi.p|Trimin1|155143 vs. uniprot
Match: A0A6C0FCP6_9ZZZZ (CCHC-type domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0FCP6_9ZZZZ)

HSP 1 Score: 90.9 bits (224), Expect = 7.450e-21
Identity = 46/116 (39.66%), Postives = 64/116 (55.17%), Query Frame = 1
Query:    4 VYTLKLRGGKYYVGFTTNLPKRLEQHYT--GTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMASHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLNCGDPTHFAADC 345
            +Y L L   KYYVG T N   RL+ H+     +GA WT+ YP   V  I  N + F E   T M M  HG++NVRGGSY+       ++  +EK+++ A ++C +CG   HF A C
Sbjct:    4 IYILLLEQQKYYVGKTNNPIFRLKDHFHEGSKNGAAWTRKYPPLEVEKIIPNCDNFDEDKITKMYMKQHGIDNVRGGSYVKISLDEMQKLLLEKEIFTAENSCFHCGQKGHFIATC 119          
BLAST of jgi.p|Trimin1|155143 vs. uniprot
Match: A0A6C0ASW7_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0ASW7_9ZZZZ)

HSP 1 Score: 90.9 bits (224), Expect = 2.610e-20
Identity = 43/114 (37.72%), Postives = 65/114 (57.02%), Query Frame = 1
Query:    4 VYTLKLRGGKYYVGFTTNLPKRLEQHYTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMASHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLNCGDPTHFAADC 345
            +YTL+L GGKYY+G T N   RLE H+  ++G+ WTK Y   R++ ++ N + + E   T   M  +G+NNVRGGS+++ +        +++   G  D C  C    HFA DC
Sbjct:    4 IYTLQLEGGKYYIGKTNNPQFRLESHFN-SNGSEWTKLYKPIRILELKPNCDDYDEDKITRQYMDKYGINNVRGGSFVSIKLQKHTIDTLKQMRNGTNDKCFVCEKVGHFAKDC 116          
BLAST of jgi.p|Trimin1|155143 vs. uniprot
Match: A0A6C0D289_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0D289_9ZZZZ)

HSP 1 Score: 89.7 bits (221), Expect = 3.750e-20
Identity = 45/114 (39.47%), Postives = 65/114 (57.02%), Query Frame = 1
Query:    4 VYTLKLRGGKYYVGFTTNLPKRLEQHYTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMASHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLNCGDPTHFAADC 345
            +Y L+L   KYY+G TTN+  RLE HYT  D A WT+ Y   +V +I  + +++ E   TL  M  +G+NNVRGGS+   + +      + + +   TD C  CGD  HFA +C
Sbjct:    3 IYVLQLEQNKYYIGKTTNIAFRLEDHYTLNDAA-WTRKYTPIQVESIIADCDEYDEDKYTLKYMEKYGINNVRGGSFCEIKLSDANIITLNQIMNSVTDKCYICGDNGHFANEC 115          
BLAST of jgi.p|Trimin1|155143 vs. uniprot
Match: A0A6C0HQA0_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0HQA0_9ZZZZ)

HSP 1 Score: 87.8 bits (216), Expect = 4.830e-20
Identity = 41/114 (35.96%), Postives = 64/114 (56.14%), Query Frame = 1
Query:    4 VYTLKLRGGKYYVGFTTNLPKRLEQHYTGTDGAMWTKHYPMERVVNIEYNGNKFKEATATLMLMASHGLNNVRGGSYITARFTPEERRAIEKQLWGATDACLNCGDPTHFAADC 345
            +Y L+L  GK+YVG T N   RL+ H+  ++G+ WTK Y   +++ +  N + + E   T M M  +G++NVRGGS+++       +  + +   G  D C NCG   HFA DC
Sbjct:    4 IYILQLEKGKFYVGKTINPSFRLDSHFN-SNGSAWTKLYKPIKMIELIPNCDDYDEDKYTRMFMDKYGIDNVRGGSFVSVELEQSTKTHLTQMKNGTNDKCFNCGKSGHFAKDC 116          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155143 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZI4_9STRA3.350e-8197.39CCHC-type domain-containing protein (Fragment) n=2... [more]
A0A835YSD6_9STRA1.510e-6881.58GIY-YIG domain-containing protein (Fragment) n=1 T... [more]
A0A3G5A8D2_9VIRU2.280e-2242.11GIY-YIG nuclease n=1 Tax=Hyperionvirus sp. TaxID=2... [more]
A0A6C0K9G4_9ZZZZ8.620e-2240.35Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0JPV8_9ZZZZ2.670e-2138.60Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0DJP0_9ZZZZ4.640e-2137.72Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0FCP6_9ZZZZ7.450e-2139.66CCHC-type domain-containing protein n=1 Tax=viral ... [more]
A0A6C0ASW7_9ZZZZ2.610e-2037.72Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0D289_9ZZZZ3.750e-2039.47Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A6C0HQA0_9ZZZZ4.830e-2035.96Uncharacterized protein n=1 Tax=viral metagenome T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_106contigContig_106:90482..90826 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155143|gw1.106.93.1
BRITEko00000,ko03000
KEGG koko:K09250
Descriptionzinc finger
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2E365@1|root,2SAAX@2759|Eukaryota
Evalue6.2e-21
Seed ortholog4792.ETI40842
Hectar predicted targeting categoryother localisation
TranscriptId155465
TrackFilteredModels1
ProteinId155143
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155143gene_9491Tribonema minus UTEX_B_3156 geneContig_106 90482..90826 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9491_1exon_9491_1Tribonema minus UTEX_B_3156 exonContig_106 90482..90826 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9491CDS_9491Tribonema minus UTEX_B_3156 CDSContig_106 90482..90826 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155143Trimin1|155143|gw1.106.93.1Tribonema minus UTEX_B_3156 polypeptideContig_106 90482..90826 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9491 ID=mRNA_9491|Name=jgi.p|Trimin1|155143|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=345bp|location=Sequence derived from alignment at Contig_106:90482..90826+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCGTGTACACACTGAAGCTGAGGGGGGGCAAATATTACGTGGGGTTCAC
GACCAACCTTCCCAAGCGACTCGAGCAGCACTATACGGGCACCGACGGTG
CAATGTGGACGAAGCATTACCCCATGGAGCGAGTCGTCAACATTGAGTAC
AATGGCAACAAGTTCAAGGAAGCGACGGCGACGCTGATGCTGATGGCGAG
TCACGGCCTCAACAACGTCAGAGGTGGCTCATACATTACGGCTCGATTTA
CACCGGAAGAGAGGCGGGCGATTGAGAAGCAGCTGTGGGGAGCTACGGAT
GCGTGCCTCAATTGCGGCGATCCCACGCACTTCGCAGCGGACTGC
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protein sequence of jgi.p|Trimin1|155143

>Trimin1|155143|gw1.106.93.1 ID=Trimin1|155143|gw1.106.93.1|Name=jgi.p|Trimin1|155143|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=115bp
VVYTLKLRGGKYYVGFTTNLPKRLEQHYTGTDGAMWTKHYPMERVVNIEY
NGNKFKEATATLMLMASHGLNNVRGGSYITARFTPEERRAIEKQLWGATD
ACLNCGDPTHFAADC
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mRNA from alignment at Contig_106:90482..90826+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9491 ID=mRNA_9491|Name=jgi.p|Trimin1|155143|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=345bp|location=Sequence derived from alignment at Contig_106:90482..90826+ (Tribonema minus UTEX_B_3156 )
GTCGTGTACACACTGAAGCTGAGGGGGGGCAAATATTACGTGGGGTTCAC GACCAACCTTCCCAAGCGACTCGAGCAGCACTATACGGGCACCGACGGTG CAATGTGGACGAAGCATTACCCCATGGAGCGAGTCGTCAACATTGAGTAC AATGGCAACAAGTTCAAGGAAGCGACGGCGACGCTGATGCTGATGGCGAG TCACGGCCTCAACAACGTCAGAGGTGGCTCATACATTACGGCTCGATTTA CACCGGAAGAGAGGCGGGCGATTGAGAAGCAGCTGTGGGGAGCTACGGAT GCGTGCCTCAATTGCGGCGATCCCACGCACTTCGCAGCGGACTGC
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Coding sequence (CDS) from alignment at Contig_106:90482..90826+

>mRNA_9491 ID=mRNA_9491|Name=jgi.p|Trimin1|155143|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=345bp|location=Sequence derived from alignment at Contig_106:90482..90826+ (Tribonema minus UTEX_B_3156 )
GTCGTGTACACACTGAAGCTGAGGGGGGGCAAATATTACGTGGGGTTCAC
GACCAACCTTCCCAAGCGACTCGAGCAGCACTATACGGGCACCGACGGTG
CAATGTGGACGAAGCATTACCCCATGGAGCGAGTCGTCAACATTGAGTAC
AATGGCAACAAGTTCAAGGAAGCGACGGCGACGCTGATGCTGATGGCGAG
TCACGGCCTCAACAACGTCAGAGGTGGCTCATACATTACGGCTCGATTTA
CACCGGAAGAGAGGCGGGCGATTGAGAAGCAGCTGTGGGGAGCTACGGAT
GCGTGCCTCAATTGCGGCGATCCCACGCACTTCGCAGCGGACTGC
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