mRNA_9463 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|151239
Unique NamemRNA_9463
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|151239 vs. uniprot
Match: A0A836CMT6_9STRA (Histone H4 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMT6_9STRA)

HSP 1 Score: 192 bits (489), Expect = 4.350e-62
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 1 
Query:    1 MTGRGRGGKGLGKGGAKRHRKVLRDNIQGITKAAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVLALKRQGRVLYGFG 306
            MTGRGRGGKGLGKGGAKRHRKVLRDNIQGITKAAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVLALKRQGRVLYGFG
Sbjct:    1 MTGRGRGGKGLGKGGAKRHRKVLRDNIQGITKAAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVLALKRQGRVLYGFG 102
[Close]
BLAST of jgi.p|Trimin1|151239 vs. uniprot
Match: F0W2L9_9STRA (Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID=F0W2L9_9STRA)

HSP 1 Score: 186 bits (472), Expect = 1.760e-59
Identity = 98/102 (96.08%), Postives = 99/102 (97.06%), Query Frame = 1 
Query:    1 MTGRGRGGKGLGKGGAKRHRKVLRDNIQGITKAAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVLALKRQGRVLYGFG 306
            MTGRG+GGKGLGKGGAKRHRKVLRDNIQGITK AIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVV ALKRQGR LYGFG
Sbjct:    1 MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102
[Close]
BLAST of jgi.p|Trimin1|151239 vs. uniprot
Match: V9LJF7_CALMI (Histone H4 n=6 Tax=Bilateria TaxID=33213 RepID=V9LJF7_CALMI)

HSP 1 Score: 185 bits (469), Expect = 5.050e-59
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 1 
Query:    1 MTGRGRGGKGLGKGGAKRHRKVLRDNIQGITKAAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVLALKRQGRVLYGFG 306
            MTGRG+GGKGLGKGGAKRHRKVLRDNIQGITK AIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHA+RKTVTAMDVV ALKRQGR LYGFG
Sbjct:    1 MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 102
[Close]
BLAST of jgi.p|Trimin1|151239 vs. uniprot
Match: A0A835ZF66_9STRA (Histone H4 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF66_9STRA)

HSP 1 Score: 185 bits (469), Expect = 5.050e-59
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 1 
Query:    1 MTGRGRGGKGLGKGGAKRHRKVLRDNIQGITKAAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVLALKRQGRVLYGFG 306
            MTGRG+GGKGLGKGGAKRHRKVLRDNIQGITK AIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVT+MDVV ALKRQGR LYGFG
Sbjct:    1 MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTSMDVVYALKRQGRTLYGFG 102
[Close]
BLAST of jgi.p|Trimin1|151239 vs. uniprot
Match: A0A024G0M5_9STRA (Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepID=A0A024G0M5_9STRA)

HSP 1 Score: 184 bits (468), Expect = 7.180e-59
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 1 
Query:    1 MTGRGRGGKGLGKGGAKRHRKVLRDNIQGITKAAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVLALKRQGRVLYGFG 306
            M+GRG+GGKGLGKGGAKRHRKVLRDNIQGITK AIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVV ALKRQGR LYGFG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102
[Close]
BLAST of jgi.p|Trimin1|151239 vs. uniprot
Match: H4_SOLLC (Histone H4 n=13 Tax=cellular organisms TaxID=131567 RepID=H4_SOLLC)

HSP 1 Score: 184 bits (467), Expect = 1.020e-58
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 1 
Query:    1 MTGRGRGGKGLGKGGAKRHRKVLRDNIQGITKAAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVLALKRQGRVLYGFG 306
            M+GRG+GGKGLGKGGAKRHRKVLRDNIQGITK AIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDSVTYTEHARRKTVTAMDVV ALKRQGR LYGFG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 102
[Close]
BLAST of jgi.p|Trimin1|151239 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 184 bits (468), Expect = 1.450e-58
Identity = 97/102 (95.10%), Postives = 99/102 (97.06%), Query Frame = 1 
Query:    1 MTGRGRGGKGLGKGGAKRHRKVLRDNIQGITKAAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVLALKRQGRVLYGFG 306
            M+GRG+GGKGLGKGGAKRHRKVLRDNIQGITK AIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVV ALKRQGR LYGFG
Sbjct:   23 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFG 124
[Close]
BLAST of jgi.p|Trimin1|151239 vs. uniprot
Match: H4_DROME (Histone H4 n=192 Tax=cellular organisms TaxID=131567 RepID=H4_DROME)

HSP 1 Score: 184 bits (466), Expect = 1.450e-58
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 1 
Query:    1 MTGRGRGGKGLGKGGAKRHRKVLRDNIQGITKAAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVLALKRQGRVLYGFG 306
            MTGRG+GGKGLGKGGAKRHRKVLRDNIQGITK AIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVV ALKRQGR LYGFG
Sbjct:    1 MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 102
[Close]
BLAST of jgi.p|Trimin1|151239 vs. uniprot
Match: A0A1D1W2Z4_RAMVA (Histone H4 n=4 Tax=Panarthropoda TaxID=88770 RepID=A0A1D1W2Z4_RAMVA)

HSP 1 Score: 184 bits (466), Expect = 1.450e-58
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 1 
Query:    1 MTGRGRGGKGLGKGGAKRHRKVLRDNIQGITKAAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVLALKRQGRVLYGFG 306
            MTGRG+GGKGLGKGGAKRHRKVLRDNIQGITK AIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVV ALKRQGR LYGFG
Sbjct:    1 MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 102
[Close]
BLAST of jgi.p|Trimin1|151239 vs. uniprot
Match: A0A182QIK7_9DIPT (Histone H4 n=1 Tax=Anopheles farauti TaxID=69004 RepID=A0A182QIK7_9DIPT)

HSP 1 Score: 184 bits (466), Expect = 1.450e-58
Identity = 96/102 (94.12%), Postives = 99/102 (97.06%), Query Frame = 1 
Query:    1 MTGRGRGGKGLGKGGAKRHRKVLRDNIQGITKAAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVLALKRQGRVLYGFG 306
            MTGRG+GGKGLGKGGAKRHRKVLRDNIQGITK AIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVV ALKRQGR LYGFG
Sbjct:    1 MTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFG 102
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151239 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CMT6_9STRA4.350e-62100.00Histone H4 (Fragment) n=1 Tax=Tribonema minus TaxI... [more]
F0W2L9_9STRA1.760e-5996.08Histone H4 n=3 Tax=Stramenopiles TaxID=33634 RepID... [more]
V9LJF7_CALMI5.050e-5995.10Histone H4 n=6 Tax=Bilateria TaxID=33213 RepID=V9L... [more]
A0A835ZF66_9STRA5.050e-5995.10Histone H4 n=2 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A024G0M5_9STRA7.180e-5995.10Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepI... [more]
H4_SOLLC1.020e-5894.12Histone H4 n=13 Tax=cellular organisms TaxID=13156... [more]
A0A3L6V663_9STRA1.450e-5895.10Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID... [more]
H4_DROME1.450e-5894.12Histone H4 n=192 Tax=cellular organisms TaxID=1315... [more]
A0A1D1W2Z4_RAMVA1.450e-5894.12Histone H4 n=4 Tax=Panarthropoda TaxID=88770 RepID... [more]
A0A182QIK7_9DIPT1.450e-5894.12Histone H4 n=1 Tax=Anopheles farauti TaxID=69004 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_106contigContig_106:39387..39692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|151239|gw1.106.75.1
BRITEko00000,ko00001,ko03036
KEGG Pathwayko05034,ko05203,ko05322,map05034,map05203,map05322
KEGG koko:K11254
GOsGO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0001101,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0005911,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006950,GO:0006996,GO:0008150,GO:0009414,GO:0009415,GO:0009506,GO:0009507,GO:0009536,GO:0009579,GO:0009628,GO:0009987,GO:0010035,GO:0016020,GO:0016043,GO:0022607,GO:0030054,GO:0031090,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042221,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044437,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0050896,GO:0051276,GO:0055044,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0071944,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901700
Descriptionprotein heterodimerization activity
COG categoryB
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2036@1|root,KOG3467@2759|Eukaryota
Evalue2.89e-60
Seed ortholog653948.CCA15305
Hectar predicted targeting categoryother localisation
TranscriptId151561
TrackFilteredModels1
ProteinId151239
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151239gene_9463Tribonema minus UTEX_B_3156 geneContig_106 39387..39692 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9463_1exon_9463_1Tribonema minus UTEX_B_3156 exonContig_106 39387..39692 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9463CDS_9463Tribonema minus UTEX_B_3156 CDSContig_106 39387..39692 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151239Trimin1|151239|gw1.106.75.1Tribonema minus UTEX_B_3156 polypeptideContig_106 39387..39692 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9463 ID=mRNA_9463|Name=jgi.p|Trimin1|151239|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=306bp|location=Sequence derived from alignment at Contig_106:39387..39692- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGGTCGTGGCCGCGGTGGAAAGGGCCTCGGAAAAGGCGGCGCAAA
GCGTCACCGTAAAGTGCTGCGCGATAACATTCAAGGTATTACGAAGGCAG
CGATTCGCCGCCTGGCGCGTCGCGGCGGGGTCAAGCGCATTTCGGGGCTC
ATTTATGAGGAGACTCGTGGTGTGCTCAAAGTTTTTCTGGAGAACGTCAT
TCGTGATAGTGTGACCTACACGGAGCACGCTCGCAGAAAGACAGTGACTG
CAATGGATGTGGTGCTGGCGTTGAAGCGTCAGGGCAGGGTGCTGTACGGC
TTTGGG
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protein sequence of jgi.p|Trimin1|151239

>Trimin1|151239|gw1.106.75.1 ID=Trimin1|151239|gw1.106.75.1|Name=jgi.p|Trimin1|151239|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=102bp
MTGRGRGGKGLGKGGAKRHRKVLRDNIQGITKAAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVLALKRQGRVLYG
FG
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mRNA from alignment at Contig_106:39387..39692-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9463 ID=mRNA_9463|Name=jgi.p|Trimin1|151239|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=306bp|location=Sequence derived from alignment at Contig_106:39387..39692- (Tribonema minus UTEX_B_3156 )
ATGACGGGTCGTGGCCGCGGTGGAAAGGGCCTCGGAAAAGGCGGCGCAAA
GCGTCACCGTAAAGTGCTGCGCGATAACATTCAAGGTATTACGAAGGCAG
CGATTCGCCGCCTGGCGCGTCGCGGCGGGGTCAAGCGCATTTCGGGGCTC
ATTTATGAGGAGACTCGTGGTGTGCTCAAAGTTTTTCTGGAGAACGTCAT
TCGTGATAGTGTGACCTACACGGAGCACGCTCGCAGAAAGACAGTGACTG
CAATGGATGTGGTGCTGGCGTTGAAGCGTCAGGGCAGGGTGCTGTACGGC
TTTGGG
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Coding sequence (CDS) from alignment at Contig_106:39387..39692-

>mRNA_9463 ID=mRNA_9463|Name=jgi.p|Trimin1|151239|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=306bp|location=Sequence derived from alignment at Contig_106:39387..39692- (Tribonema minus UTEX_B_3156 )
ATGACGGGTCGTGGCCGCGGTGGAAAGGGCCTCGGAAAAGGCGGCGCAAA
GCGTCACCGTAAAGTGCTGCGCGATAACATTCAAGGTATTACGAAGGCAG
CGATTCGCCGCCTGGCGCGTCGCGGCGGGGTCAAGCGCATTTCGGGGCTC
ATTTATGAGGAGACTCGTGGTGTGCTCAAAGTTTTTCTGGAGAACGTCAT
TCGTGATAGTGTGACCTACACGGAGCACGCTCGCAGAAAGACAGTGACTG
CAATGGATGTGGTGCTGGCGTTGAAGCGTCAGGGCAGGGTGCTGTACGGC
TTTGGG
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