mRNA_9457 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173813
Unique NamemRNA_9457
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|173813 vs. uniprot
Match: A0A836CNX1_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNX1_9STRA)

HSP 1 Score: 592 bits (1525), Expect = 9.030e-214
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 1
Query:    1 MIETCGPVVDKLLETNAARLKKFVESQAAELQKGGRLPVSSGGRRYGLVKQKPDNRDYQFVAASRKSLPAAVDLRTTGCVPPVLDQGSAGTCSAHAAASALRFLLRKEKLQDFPPSRLFLYYVTRVYVEGVSPSEDSGCALRDVAKAIATYHVCNERYMTYDPAKIAEQPPALAVANARLHTTFTYRAVQQSLSALKGALASGYPVLVGFQVYESFESEEVARTGGVPMPAEGEQCLGGHACLLIGYNDATQTFTLLNSWGLWGQNGFFTLPYAYLTDTELACDFWTASGFA 876
            MIETCGPVVDKLLETNAARLKKFVESQAAELQKGGRLPVSSGGRRYGLVKQKPDNRDYQFVAASRKSLPAAVDLRTTGCVPPVLDQGSAGTCSAHAAASALRFLLRKEKLQDFPPSRLFLYYVTRVYVEGVSPSEDSGCALRDVAKAIATYHVCNERYMTYDPAKIAEQPPALAVANARLHTTFTYRAVQQSLSALKGALASGYPVLVGFQVYESFESEEVARTGGVPMPAEGEQCLGGHACLLIGYNDATQTFTLLNSWGLWGQNGFFTLPYAYLTDTELACDFWTASGFA
Sbjct:    1 MIETCGPVVDKLLETNAARLKKFVESQAAELQKGGRLPVSSGGRRYGLVKQKPDNRDYQFVAASRKSLPAAVDLRTTGCVPPVLDQGSAGTCSAHAAASALRFLLRKEKLQDFPPSRLFLYYVTRVYVEGVSPSEDSGCALRDVAKAIATYHVCNERYMTYDPAKIAEQPPALAVANARLHTTFTYRAVQQSLSALKGALASGYPVLVGFQVYESFESEEVARTGGVPMPAEGEQCLGGHACLLIGYNDATQTFTLLNSWGLWGQNGFFTLPYAYLTDTELACDFWTASGFA 292          
BLAST of jgi.p|Trimin1|173813 vs. uniprot
Match: A0A836CN22_9STRA (Pept_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN22_9STRA)

HSP 1 Score: 473 bits (1216), Expect = 1.110e-166
Identity = 222/291 (76.29%), Postives = 258/291 (88.66%), Query Frame = 1
Query:    1 MIETCGPVVDKLLETNAARLKKFVESQAAELQKGGRLPVSSGGRRYGLVKQKPDNRDYQFVAASRKSLPAAVDLRTTGCVPPVLDQGSAGTCSAHAAASALRFLLRKEKLQDFPPSRLFLYYVTRVYVEGVSPSEDSGCALRDVAKAIATYHVCNERYMTYDPAKIAEQPPALAVANARLHTTFTYRAVQQSLSALKGALASGYPVLVGFQVYESFESEEVARTGGVPMPAEGEQCLGGHACLLIGYNDATQTFTLLNSWGLWGQNGFFTLPYAYLTDTELACDFWTASGF 873
            MI+TCGP++D+LL  NAA+L K ++SQAAEL+K   LPVS+GG+RYGLVKQKPD+RD+QFV+A++ S+PAAVDLRTTG VPP +DQG AGTCSAHAA+SALRFL+RKEKLQDF PSRLF+Y+ +RVYVEGV+PSED+GCALRDV KA++TYHVCNERYM Y   KIAE PPALAVANARLHTTF YRAVQQSLSALK ALASGYPV+VG QVYESFES++VARTG VPMP++GEQCLGGHA L +G+ D TQTFTLLNSWG WGQNGFFTLPY YLT+ +LA DFW  +GF
Sbjct:    1 MIDTCGPLIDRLLHINAAKLNKIIQSQAAELEKRDNLPVSTGGKRYGLVKQKPDDRDFQFVSAAKSSIPAAVDLRTTGFVPPAMDQGQAGTCSAHAASSALRFLIRKEKLQDFQPSRLFIYFTSRVYVEGVAPSEDTGCALRDVVKALSTYHVCNERYMPYSDTKIAEHPPALAVANARLHTTFMYRAVQQSLSALKSALASGYPVIVGIQVYESFESDDVARTGNVPMPSDGEQCLGGHAVLCVGFQDKTQTFTLLNSWGQWGQNGFFTLPYDYLTNPDLAFDFWMITGF 291          
BLAST of jgi.p|Trimin1|173813 vs. uniprot
Match: A0A836CEQ3_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEQ3_9STRA)

HSP 1 Score: 435 bits (1119), Expect = 1.920e-152
Identity = 215/248 (86.69%), Postives = 226/248 (91.13%), Query Frame = 1
Query:  133 RYGLVKQKPDNRDYQFVAASRKSLPAAVDLRTTGCVPPVLDQGSAGTCSAHAAASALRFLLRKEKLQDFPPSRLFLYYVTRVYVEGVSPSEDSGCALRDVAKAIATYHVCNERYMTYDPAKIAEQPPALAVANARLHTTFTYRAVQQSLSALKGALASGYPVLVGFQVYESFESEEVARTGGVPMPAEGEQCLGGHACLLIGYNDATQTFTLLNSWG-LWGQNGFFTLPYAYLTDTELACDFWTASGF 873
            RYGLVKQKPD+RDYQFVAASRKSLPAAVDLRTTG VPPV+DQGSAGTCSAHA ASALRFLLRKEKLQDFPPSRLFLYYVTRVYVEGVSPSEDSGCALRDVAKAIATYHVCNERYM YD  KIAEQPPALAVANARLHTTFTYRAVQQSLSALKGALASGYPV+VG QVY+SFE+EEVARTG VPMPAEGEQCLGGHA  L+ + DAT+TFTL NSW   WGQ GFF L Y YLT+ +LACDFW  +GF
Sbjct:   10 RYGLVKQKPDDRDYQFVAASRKSLPAAVDLRTTGYVPPVMDQGSAGTCSAHATASALRFLLRKEKLQDFPPSRLFLYYVTRVYVEGVSPSEDSGCALRDVAKAIATYHVCNERYMEYDDTKIAEQPPALAVANARLHTTFTYRAVQQSLSALKGALASGYPVVVGIQVYDSFETEEVARTGVVPMPAEGEQCLGGHAVYLVAFEDATRTFTLCNSWSSAWGQGGFFKLSYDYLTNPDLACDFWMTTGF 257          
BLAST of jgi.p|Trimin1|173813 vs. uniprot
Match: A0A836CMZ0_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMZ0_9STRA)

HSP 1 Score: 421 bits (1081), Expect = 3.950e-146
Identity = 199/292 (68.15%), Postives = 240/292 (82.19%), Query Frame = 1
Query:    1 MIETCGPVVDKLLETNAARLKKFVESQAAELQKGGRLPVSSGGRRYGLVKQKPDNRDYQFVAASRKSLPAAVDLRTTGCVPPVLDQGSAGTCSAHAAASALRFLLRKEKLQDFPPSRLFLYYVTRVYVEGVSPSEDSGCALRDVAKAIATYHVCNERYMTYDPAKIAEQPPALAVANARLHTTFTYRAVQQSLSALKGALASGYPVLVGFQVYESFESEEVARTGGVPMPAEGEQCLGGHACLLIGYNDATQTFTLLNSWGLWGQNGFFTLPYAYLTDTELACDFWTASGFA 876
            MI T GP++DKLLETNAARL+KF  ++A + +K   LP S+GGRRYG +KQK D+RDY FVA+ R S+P  VDLR+TG + PVL+QGSAGTCSAHAAA+ALR+LLRKE +QDFPPSRLF+YY TRV +EG+SP  DSGC LRDV +A+  +H CNERYM Y   +I E+PPALAVANARLHTTF YRAV+Q+LSAL+GALA+GYPV+VG QVY++FESEEVA TG VPMP+  E+CLGGHA LL+ Y+D T+TFTL NSWG WGQ+GFF+LPY YL DT LA DFW  + FA
Sbjct:    1 MISTSGPLIDKLLETNAARLEKFERTEAGDAKKPAHLPASAGGRRYGTIKQKEDSRDYSFVASFRNSIPQKVDLRSTGFLGPVLNQGSAGTCSAHAAAAALRYLLRKEHVQDFPPSRLFVYYTTRVNIEGISPEIDSGCVLRDVCRALQKFHTCNERYMAYSDTQITERPPALAVANARLHTTFAYRAVEQTLSALRGALATGYPVIVGIQVYQTFESEEVANTGVVPMPSHNEECLGGHAVLLVAYDDETRTFTLQNSWGEWGQDGFFSLPYDYLIDTGLAGDFWCLTRFA 292          
BLAST of jgi.p|Trimin1|173813 vs. uniprot
Match: A0A835Z842_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z842_9STRA)

HSP 1 Score: 317 bits (812), Expect = 2.300e-105
Identity = 162/278 (58.27%), Postives = 204/278 (73.38%), Query Frame = 1
Query:   46 NAARLKKFVESQAAELQKGGRLPVSSGGRRYGLVKQKPDNRDYQFVAASR-KSLPAAVDLRTTGCVPPVLDQGSAGTCSAHAAASALRFLLRKEKLQDFPPSRLFLYYVTRVYVEGVSPSEDSGCALRDVAKAIATYHVCNERYMTYDPAKIAEQPPALAVANARLHTTFTYRAVQQSLSALKGALASGYPVLVGFQVYESFESEEVARTGGVPMPAEGEQCLGGHACLLIGYNDATQTFTLLNSWGL-WGQNGFFTLPYAYLTDTELACDFWTASGF 873
            N A+  +  E  A  L+ G   P++  GR++ L +Q  D RD  F +  +  +LP AVDLR TG +PPVLDQG AGTCSAHA+A+AL +LLR+EK+ DF P+RL++YY TRVYVEG+  S+DSGC LRDV KAI  YHV +ER+  Y   KI+E+P A+AVANARLH T  Y AV Q+  ALK ALA+ YPV++G QV+ESFES+ VA+TG VPMP EGEQCLGGHA  ++GY+DAT+TFTL+NSW   WG +GFFTLPY Y+ D+ LA DFWT   F
Sbjct:   11 NHAKPVEIAEDDAPALRTG---PLT--GRKFHLKRQSFDRRDIVFSSNVKVATLPGAVDLRNTGFMPPVLDQGQAGTCSAHASANALHYLLRREKVADFSPARLYIYYTTRVYVEGIPASDDSGCVLRDVCKAIKKYHVPDERFEPYSDQKISERPSAMAVANARLHATLRYEAVPQTEQALKRALAARYPVMIGIQVFESFESDAVAQTGVVPMPQEGEQCLGGHAVDVVGYDDATRTFTLMNSWSTQWGDSGFFTLPYEYVLDSNLASDFWTFKLF 283          
BLAST of jgi.p|Trimin1|173813 vs. uniprot
Match: A0A836CBQ3_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBQ3_9STRA)

HSP 1 Score: 315 bits (808), Expect = 2.380e-104
Identity = 154/251 (61.35%), Postives = 194/251 (77.29%), Query Frame = 1
Query:  127 GRRYGLVKQKPDNRDYQFVAA-SRKSLPAAVDLRTTGCVPPVLDQGSAGTCSAHAAASALRFLLRKEKLQDFPPSRLFLYYVTRVYVEGVSPSEDSGCALRDVAKAIATYHVCNERYMTYDPAKIAEQPPALAVANARLHTTFTYRAVQQSLSALKGALASGYPVLVGFQVYESFESEEVARTGGVPMPAEGEQCLGGHACLLIGYNDATQTFTLLNSWGL-WGQNGFFTLPYAYLTDTELACDFWTASGF 873
            GR+Y L  Q+PD+RD  F +  +   +P +VDLRT+G +PPVLDQ SAGTCSAHA+A+AL +LL++EK+ DF P+RL++YY TRVYVEG   +EDSGC LRDV KAI TYHV +E+Y  Y   KI+++P A+AVANARLHTT  YRAV Q+   LKGALA+G+PV++G QVYESFES+EVA TG VPMP +GE+CLG HA L IG++DAT+ F L+NSWG+ +G  GFFTLPY Y+ D  LA DFWT   F
Sbjct:   61 GRKYTLRLQEPDSRDLVFTSTINGADMPLSVDLRTSGFMPPVLDQQSAGTCSAHASANALHYLLKREKVADFSPARLYIYYTTRVYVEGTPATEDSGCVLRDVGKAIKTYHVPDEKYEPYSDKKISQRPSAMAVANARLHTTLKYRAVAQTEHDLKGALAAGFPVMIGIQVYESFESDEVAATGEVPMPEDGEECLGAHATLCIGFDDATRKFKLMNSWGVAFGDKGFFTLPYEYVLDPNLASDFWTFKVF 311          
BLAST of jgi.p|Trimin1|173813 vs. uniprot
Match: A0A835YYL4_9STRA (Papain cysteine protease family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYL4_9STRA)

HSP 1 Score: 309 bits (791), Expect = 4.630e-102
Identity = 153/250 (61.20%), Postives = 188/250 (75.20%), Query Frame = 1
Query:  130 RRYGLVKQKPDNRDYQFVAASR-KSLPAAVDLRTTGCVPPVLDQGSAGTCSAHAAASALRFLLRKEKLQDFPPSRLFLYYVTRVYVEGVSPSEDSGCALRDVAKAIATYHVCNERYMTYDPAKIAEQPPALAVANARLHTTFTYRAVQQSLSALKGALASGYPVLVGFQVYESFESEEVARTGGVPMPAEGEQCLGGHACLLIGYNDATQTFTLLNSWGL-WGQNGFFTLPYAYLTDTELACDFWTASGF 873
            R++ L +Q  D RD  F +  +  +LP AVDLR TG +PPVLDQG AGTCSAHA+A+AL +LLR+EK+ DF P+RL++YY TRVYVEG    +DSGC LRDV KAI  YHV +ERY  Y   KI+E+P A+AVANARLH T  Y AV Q+  ALK ALA+ YPV++G QV+ESFES++VA+TG VPMP EGEQCLGGHA  ++GY+D T+TFTL+NSW   WG +GFFTLPY Y+ D  LA DFWT   F
Sbjct:   42 RKFHLKRQSFDRRDIVFSSNVKVATLPGAVDLRNTGFMPPVLDQGQAGTCSAHASANALHYLLRREKVADFSPARLYIYYTTRVYVEGTPAFDDSGCVLRDVCKAIKKYHVPDERYEPYSDQKISERPSAMAVANARLHATLRYEAVPQTEQALKRALAARYPVMIGIQVFESFESDKVAQTGVVPMPQEGEQCLGGHAVDVVGYDDVTRTFTLMNSWSTQWGDSGFFTLPYEYVLDPSLASDFWTFQLF 291          
BLAST of jgi.p|Trimin1|173813 vs. uniprot
Match: A0A835ZGP7_9STRA (Pept_C1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGP7_9STRA)

HSP 1 Score: 265 bits (676), Expect = 7.580e-86
Identity = 128/207 (61.84%), Postives = 153/207 (73.91%), Query Frame = 1
Query:  256 QGSAGTCSAHAAASALRFLLRKEKLQDFPPSRLFLYYVTRVYVEGVSPSEDSGCALRDVAKAIATYHVCNERYMTYDPAKIAEQPPALAVANARLHTTFTYRAVQQSLSALKGALASGYPVLVGFQVYESFESEEVARTGGVPMPAEGEQCLGGHACLLIGYNDATQTFTLLNSWG-LWGQNGFFTLPYAYLTDTELACDFWTASGF 873
            QG AGTCSAHAAA+ L +LLRKE + DFPPSRLF+YY  RVYVEG   +EDSGC LRDV KA+A YH  +E+Y  Y  A+IA++P ALAVANAR H    YRAV Q+ + LKGALA+GYPV+VG QVY  FES+EVARTG   +P   E CLGGHA +L  Y+D+ + FTL+NSW   WG+ GFFTLPY YL D +LA DFW  + F
Sbjct:    1 QGRAGTCSAHAAANCLHYLLRKEGVADFPPSRLFIYYTARVYVEGTPATEDSGCVLRDVCKAVARYHAPDEKYEPYSDARIAQRPSALAVANARKHCALQYRAVPQTEADLKGALAAGYPVMVGIQVYAGFESDEVARTGEAQLPGPDEACLGGHAVVLTAYDDSLRRFTLMNSWSSAWGRGGFFTLPYDYLLDPQLAGDFWCFTAF 207          
BLAST of jgi.p|Trimin1|173813 vs. uniprot
Match: UPI001439CB6C (C1 family peptidase n=1 Tax=Planosporangium thailandense TaxID=765197 RepID=UPI001439CB6C)

HSP 1 Score: 234 bits (598), Expect = 2.530e-73
Identity = 129/252 (51.19%), Postives = 160/252 (63.49%), Query Frame = 1
Query:  112 PVSSGGRRYGLVKQKPDNRDYQFVAASR--KSLPAAVDLRTTGCVPPVLDQGSAGTCSAHAAASALRFLLRKEKLQDFPPSRLFLYYVTRVYVEGVSPSEDSGCALRDVAKAIATYHVCNERYMTYDPAKIAEQPPALAVANARLHTTFTYRAVQQSLSALKGALASGYPVLVGFQVYESFESEEVARTGGVPMPAEGEQCLGGHACLLIGYNDATQTFTLLNSWGL-WGQNGFFTLPYAYLTDTELACDFW 858
            P     +RYG +   PD RD+ F A      +LP AVDLR   C   + DQG  G+C+A+A A+A  F L K+KL DF PSRLF+YY  RV +EG   S DSG  +RD  K+++   VC E    YD A+  +QPP      A  +   +Y+ + QSLS LKG LA GYP + GF+VYESFESEEVARTG VPMP   EQ LGGHA L +GY+DAT  F + NSWG  WGQ G+FT+PYAYLT+  L+ DFW
Sbjct:    4 PTPRSVQRYGWIPDLPDQRDHLFAAPPTVLATLPPAVDLRDQ-CPKEIYDQGQLGSCTANAIAAAFEFGLLKQKLTDFMPSRLFIYYNERV-MEGTVDS-DSGAMIRDGIKSVSKQGVCAETTWPYDIARFTDQPPHSCYQEALGNRVTSYQRIIQSLSQLKGCLAHGYPFVFGFRVYESFESEEVARTGDVPMPQATEQALGGHAVLAVGYDDATARFLVRNSWGTGWGQAGYFTMPYAYLTERGLSSDFW 252          
BLAST of jgi.p|Trimin1|173813 vs. uniprot
Match: A0A0M4QQF9_9MICC (Peptidase C1 n=3 Tax=Arthrobacter TaxID=1663 RepID=A0A0M4QQF9_9MICC)

HSP 1 Score: 230 bits (586), Expect = 1.450e-71
Identity = 127/250 (50.80%), Postives = 157/250 (62.80%), Query Frame = 1
Query:  133 RYGLVKQKPDNRDYQFVA--ASRKSLPAAVDLRTTGCVPPVLDQGSAGTCSAHAAASALRFLLRKEKLQDFP-PSRLFLYYVTRVYVEGVSPSEDSGCALRDVAKAIATYHVCNERYMTYDPAKIAEQPPALAVANARLHTTFTYRAVQQSLSALKGALASGYPVLVGFQVYESFESEEVARTGGVPMPAEGEQCLGGHACLLIGYNDATQTFTLLNSWGL-WGQNGFFTLPYAYLTDTELACDFWTASG 870
            RYG V   PD RD+ F A  A + +LP AVDL T  C PPV DQG  G+C+ +  A  ++F   KEKL D   PSRLF+YY  RV +EG   S D+G  +RD  K +AT  VC+E    YD  K A +P A   A A+ H   TY  V Q+L+ +KG LASGYPV+ GF VY+SFES +VA TG VPMPA GE  LGGH  + +GY+DA+  FT+ NSWG  WGQ G+ T+PY YL  + LA DFWT   
Sbjct:    7 RYGWVPDLPDQRDFHFAAPMAVQANLPPAVDL-TPAC-PPVYDQGQLGSCTGNGVAGVVQFDALKEKLPDTSTPSRLFIYYNERV-IEGTVAS-DAGAQIRDGIKTVATTGVCDETLWPYDITKFANKPAAACYAAAKAHRAITYSRVGQTLTQMKGCLASGYPVVFGFTVYDSFESAQVASTGVVPMPAAGEGVLGGHCVVAVGYDDASSRFTIRNSWGTGWGQGGYATMPYPYLLSSSLASDFWTVKS 252          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173813 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CNX1_9STRA9.030e-214100.00Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A836CN22_9STRA1.110e-16676.29Pept_C1 domain-containing protein n=1 Tax=Tribonem... [more]
A0A836CEQ3_9STRA1.920e-15286.69Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A836CMZ0_9STRA3.950e-14668.15Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A835Z842_9STRA2.300e-10558.27Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A836CBQ3_9STRA2.380e-10461.35Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A835YYL4_9STRA4.630e-10261.20Papain cysteine protease family protein n=1 Tax=Tr... [more]
A0A835ZGP7_9STRA7.580e-8661.84Pept_C1 domain-containing protein n=1 Tax=Tribonem... [more]
UPI001439CB6C2.530e-7351.19C1 family peptidase n=1 Tax=Planosporangium thaila... [more]
A0A0M4QQF9_9MICC1.450e-7150.80Peptidase C1 n=3 Tax=Arthrobacter TaxID=1663 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_106contigContig_106:24573..25451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173813|e_gw1.106.65.1
DescriptionPapain cysteine protease family protein
COG categoryO
Max annot lvl1236|Gammaproteobacteria
EggNOG OGsCOG4870@1|root,COG4870@2|Bacteria,1MV6S@1224|Proteobacteria,1S02V@1236|Gammaproteobacteria,1Z6BR@136849|Pseudomonas syringae group
Evalue2.06e-68
Seed ortholog629265.PMA4326_07916
Hectar predicted targeting categoryother localisation
TranscriptId174135
TrackFilteredModels1
ProteinId173813
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173813gene_9457Tribonema minus UTEX_B_3156 geneContig_106 24573..25451 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9457_1exon_9457_1Tribonema minus UTEX_B_3156 exonContig_106 24573..25451 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9457CDS_9457Tribonema minus UTEX_B_3156 CDSContig_106 24573..25451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173813Trimin1|173813|e_gw1.106.65.1Tribonema minus UTEX_B_3156 polypeptideContig_106 24573..25451 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9457 ID=mRNA_9457|Name=jgi.p|Trimin1|173813|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=879bp|location=Sequence derived from alignment at Contig_106:24573..25451+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGAGACATGTGGCCCGGTTGTTGACAAGCTGCTGGAGACGAACGC
CGCGAGACTCAAGAAATTTGTAGAGTCGCAGGCGGCAGAGCTGCAGAAAG
GCGGGAGACTACCAGTGTCCTCGGGAGGCAGGCGCTACGGCCTTGTCAAG
CAGAAGCCGGATAACCGCGACTACCAGTTCGTCGCTGCGAGCAGGAAGTC
CCTCCCTGCAGCTGTTGACCTCCGCACGACCGGCTGCGTGCCGCCAGTGC
TTGACCAGGGATCTGCTGGCACGTGCAGTGCGCACGCAGCGGCCAGCGCG
TTGCGATTCCTCTTGCGCAAGGAGAAGCTGCAGGACTTTCCTCCCAGTCG
CTTATTTCTGTACTACGTGACGAGAGTGTACGTGGAGGGCGTCTCCCCCT
CTGAAGACAGCGGCTGCGCGCTGCGGGACGTGGCGAAGGCGATAGCCACC
TACCACGTGTGCAACGAGCGTTACATGACGTACGATCCCGCAAAGATCGC
GGAGCAGCCTCCCGCGCTGGCAGTGGCGAATGCGCGCCTGCACACGACCT
TCACTTACCGGGCGGTCCAGCAGTCGCTGAGTGCGCTGAAGGGCGCGCTG
GCCTCAGGATATCCAGTCCTAGTGGGATTTCAGGTGTATGAGAGCTTTGA
GTCAGAGGAGGTGGCGCGCACCGGCGGCGTCCCGATGCCGGCAGAGGGAG
AGCAGTGTCTGGGGGGGCACGCTTGCCTGCTTATTGGCTATAATGATGCC
ACACAAACATTCACCCTGCTCAACAGTTGGGGTTTATGGGGTCAAAATGG
CTTTTTCACACTCCCGTACGCCTACCTGACGGACACAGAGCTTGCGTGTG
ACTTCTGGACAGCGTCTGGGTTCGCATGA
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protein sequence of jgi.p|Trimin1|173813

>Trimin1|173813|e_gw1.106.65.1 ID=Trimin1|173813|e_gw1.106.65.1|Name=jgi.p|Trimin1|173813|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=293bp
MIETCGPVVDKLLETNAARLKKFVESQAAELQKGGRLPVSSGGRRYGLVK
QKPDNRDYQFVAASRKSLPAAVDLRTTGCVPPVLDQGSAGTCSAHAAASA
LRFLLRKEKLQDFPPSRLFLYYVTRVYVEGVSPSEDSGCALRDVAKAIAT
YHVCNERYMTYDPAKIAEQPPALAVANARLHTTFTYRAVQQSLSALKGAL
ASGYPVLVGFQVYESFESEEVARTGGVPMPAEGEQCLGGHACLLIGYNDA
TQTFTLLNSWGLWGQNGFFTLPYAYLTDTELACDFWTASGFA*
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mRNA from alignment at Contig_106:24573..25451+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9457 ID=mRNA_9457|Name=jgi.p|Trimin1|173813|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=879bp|location=Sequence derived from alignment at Contig_106:24573..25451+ (Tribonema minus UTEX_B_3156 )
ATGATCGAGACATGTGGCCCGGTTGTTGACAAGCTGCTGGAGACGAACGC CGCGAGACTCAAGAAATTTGTAGAGTCGCAGGCGGCAGAGCTGCAGAAAG GCGGGAGACTACCAGTGTCCTCGGGAGGCAGGCGCTACGGCCTTGTCAAG CAGAAGCCGGATAACCGCGACTACCAGTTCGTCGCTGCGAGCAGGAAGTC CCTCCCTGCAGCTGTTGACCTCCGCACGACCGGCTGCGTGCCGCCAGTGC TTGACCAGGGATCTGCTGGCACGTGCAGTGCGCACGCAGCGGCCAGCGCG TTGCGATTCCTCTTGCGCAAGGAGAAGCTGCAGGACTTTCCTCCCAGTCG CTTATTTCTGTACTACGTGACGAGAGTGTACGTGGAGGGCGTCTCCCCCT CTGAAGACAGCGGCTGCGCGCTGCGGGACGTGGCGAAGGCGATAGCCACC TACCACGTGTGCAACGAGCGTTACATGACGTACGATCCCGCAAAGATCGC GGAGCAGCCTCCCGCGCTGGCAGTGGCGAATGCGCGCCTGCACACGACCT TCACTTACCGGGCGGTCCAGCAGTCGCTGAGTGCGCTGAAGGGCGCGCTG GCCTCAGGATATCCAGTCCTAGTGGGATTTCAGGTGTATGAGAGCTTTGA GTCAGAGGAGGTGGCGCGCACCGGCGGCGTCCCGATGCCGGCAGAGGGAG AGCAGTGTCTGGGGGGGCACGCTTGCCTGCTTATTGGCTATAATGATGCC ACACAAACATTCACCCTGCTCAACAGTTGGGGTTTATGGGGTCAAAATGG CTTTTTCACACTCCCGTACGCCTACCTGACGGACACAGAGCTTGCGTGTG ACTTCTGGACAGCGTCTGGGTTCGCATGA
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Coding sequence (CDS) from alignment at Contig_106:24573..25451+

>mRNA_9457 ID=mRNA_9457|Name=jgi.p|Trimin1|173813|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=879bp|location=Sequence derived from alignment at Contig_106:24573..25451+ (Tribonema minus UTEX_B_3156 )
ATGATCGAGACATGTGGCCCGGTTGTTGACAAGCTGCTGGAGACGAACGC
CGCGAGACTCAAGAAATTTGTAGAGTCGCAGGCGGCAGAGCTGCAGAAAG
GCGGGAGACTACCAGTGTCCTCGGGAGGCAGGCGCTACGGCCTTGTCAAG
CAGAAGCCGGATAACCGCGACTACCAGTTCGTCGCTGCGAGCAGGAAGTC
CCTCCCTGCAGCTGTTGACCTCCGCACGACCGGCTGCGTGCCGCCAGTGC
TTGACCAGGGATCTGCTGGCACGTGCAGTGCGCACGCAGCGGCCAGCGCG
TTGCGATTCCTCTTGCGCAAGGAGAAGCTGCAGGACTTTCCTCCCAGTCG
CTTATTTCTGTACTACGTGACGAGAGTGTACGTGGAGGGCGTCTCCCCCT
CTGAAGACAGCGGCTGCGCGCTGCGGGACGTGGCGAAGGCGATAGCCACC
TACCACGTGTGCAACGAGCGTTACATGACGTACGATCCCGCAAAGATCGC
GGAGCAGCCTCCCGCGCTGGCAGTGGCGAATGCGCGCCTGCACACGACCT
TCACTTACCGGGCGGTCCAGCAGTCGCTGAGTGCGCTGAAGGGCGCGCTG
GCCTCAGGATATCCAGTCCTAGTGGGATTTCAGGTGTATGAGAGCTTTGA
GTCAGAGGAGGTGGCGCGCACCGGCGGCGTCCCGATGCCGGCAGAGGGAG
AGCAGTGTCTGGGGGGGCACGCTTGCCTGCTTATTGGCTATAATGATGCC
ACACAAACATTCACCCTGCTCAACAGTTGGGGTTTATGGGGTCAAAATGG
CTTTTTCACACTCCCGTACGCCTACCTGACGGACACAGAGCTTGCGTGTG
ACTTCTGGACAGCGTCTGGGTTCGCATGA
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