mRNA_9326 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|146722
Unique NamemRNA_9326
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|146722 vs. uniprot
Match: A0A836CCS5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCS5_9STRA)

HSP 1 Score: 117 bits (293), Expect = 2.230e-28
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 KAPSYNVPGVGAQWCSDHKTGDMQDVAHKMCQGCGLKIPIFGIEDGSPTH 150
            KAPSYNVPGVGAQWCSDHKTGDMQDVAHKMCQGCGLKIPIFGIEDGSPTH
Sbjct:    1 KAPSYNVPGVGAQWCSDHKTGDMQDVAHKMCQGCGLKIPIFGIEDGSPTH 50
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BLAST of jgi.p|Trimin1|146722 vs. uniprot
Match: A0A835ZBE1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBE1_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 3.180e-18
Identity = 38/50 (76.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 KAPSYNVPGVGAQWCSDHKTGDMQDVAHKMCQGCGLKIPIFGIEDGSPTH 150
            KAP YN+PG  AQWC +HKTGDMQDVAHK C  CGLKIP FG EDG PTH
Sbjct:  358 KAPIYNIPGAAAQWCREHKTGDMQDVAHKRCMRCGLKIPKFGTEDGRPTH 407
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BLAST of jgi.p|Trimin1|146722 vs. uniprot
Match: A0A835ZGH9_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGH9_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.420e-8
Identity = 26/36 (72.22%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   43 CSDHKTGDMQDVAHKMCQGCGLKIPIFGIEDGSPTH 150
            C +HKTGDMQDV+HK C  C LKIP FG EDG PTH
Sbjct:    1 CREHKTGDMQDVSHKRCMQCRLKIPKFGTEDGRPTH 36
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|146722 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CCS5_9STRA2.230e-28100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZBE1_9STRA3.180e-1876.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZGH9_9STRA1.420e-872.22Uncharacterized protein (Fragment) n=2 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_38contigContig_38:713692..714435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|146722|gw1.38.112.1
Hectar predicted targeting categoryother localisation
TranscriptId147044
TrackFilteredModels1
ProteinId146722
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146722gene_9326Tribonema minus UTEX_B_3156 geneContig_38 713692..714435 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9326_1exon_9326_1Tribonema minus UTEX_B_3156 exonContig_38 713692..714435 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9326CDS_9326Tribonema minus UTEX_B_3156 CDSContig_38 713692..714435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146722Trimin1|146722|gw1.38.112.1Tribonema minus UTEX_B_3156 polypeptideContig_38 713692..714435 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9326 ID=mRNA_9326|Name=jgi.p|Trimin1|146722|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=744bp|location=Sequence derived from alignment at Contig_38:713692..714435- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGGCGCCGTCCTACAACGTCCCTGGGGTAGGAGCACAGTGGTGCTCGGA
TCACAAGACTGGAGACATGCAAGATGTTGCACACAAGATGTGCCAGGGGT
GTGGACTAAAGATACCCATCTTCGGGATCGAGGACGGCAGCCCCACCCAC
TGCGGTGACTGCAAGACGGAAGATATGCAAGATGTTTACAACAATAAGTG
CGTGCAGTGCAGTCTCAAGCAACCAAACTTTGGGACAGAGGATGGAAGTC
CCACCCACTGCGGCGACTGCAAGACCGCAGACATGCGGGATGTCCGAAGC
AGGATGTGCAAGGGGTGCAGTCTAAAGCGACCAAGCTTTGAAACGGAGGA
GGGCCACCCCACCCACTGCGGTGACTGCAAGACGGCAGACATGCGAGATG
TCCGAAGCAGGAAGTGCAGGGGGTGTGAAGTAAAGACACCCACCTTTGGG
ACGGAGGATGGAAGTCCCACCCACTGCGGTGACTGCAAGACGGCAGACAT
GCGATATGTCCGAAGCAGGAAGTGCGTGAAGTGTGGGTTGAAGCAACCCA
GCTTCGGGAAGGAGGATGGCAGCCCCACTCACTGTAGAGACTGCAAGATG
GCAGATATGCGAGATGTTTCAAACAAGAAGTGTGAGAAATGTGAAAGAAA
GATACCCATATTTGGGACGGAGGACAGCAGGCCGACCCACTGCGGCGACT
GCAAGCTGGCAGACATGCTAGATGTACGCAGAAAGTGTCCGCAT
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protein sequence of jgi.p|Trimin1|146722

>Trimin1|146722|gw1.38.112.1 ID=Trimin1|146722|gw1.38.112.1|Name=jgi.p|Trimin1|146722|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=248bp
KAPSYNVPGVGAQWCSDHKTGDMQDVAHKMCQGCGLKIPIFGIEDGSPTH
CGDCKTEDMQDVYNNKCVQCSLKQPNFGTEDGSPTHCGDCKTADMRDVRS
RMCKGCSLKRPSFETEEGHPTHCGDCKTADMRDVRSRKCRGCEVKTPTFG
TEDGSPTHCGDCKTADMRYVRSRKCVKCGLKQPSFGKEDGSPTHCRDCKM
ADMRDVSNKKCEKCERKIPIFGTEDSRPTHCGDCKLADMLDVRRKCPH
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mRNA from alignment at Contig_38:713692..714435-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9326 ID=mRNA_9326|Name=jgi.p|Trimin1|146722|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=744bp|location=Sequence derived from alignment at Contig_38:713692..714435- (Tribonema minus UTEX_B_3156 )
AAGGCGCCGTCCTACAACGTCCCTGGGGTAGGAGCACAGTGGTGCTCGGA
TCACAAGACTGGAGACATGCAAGATGTTGCACACAAGATGTGCCAGGGGT
GTGGACTAAAGATACCCATCTTCGGGATCGAGGACGGCAGCCCCACCCAC
TGCGGTGACTGCAAGACGGAAGATATGCAAGATGTTTACAACAATAAGTG
CGTGCAGTGCAGTCTCAAGCAACCAAACTTTGGGACAGAGGATGGAAGTC
CCACCCACTGCGGCGACTGCAAGACCGCAGACATGCGGGATGTCCGAAGC
AGGATGTGCAAGGGGTGCAGTCTAAAGCGACCAAGCTTTGAAACGGAGGA
GGGCCACCCCACCCACTGCGGTGACTGCAAGACGGCAGACATGCGAGATG
TCCGAAGCAGGAAGTGCAGGGGGTGTGAAGTAAAGACACCCACCTTTGGG
ACGGAGGATGGAAGTCCCACCCACTGCGGTGACTGCAAGACGGCAGACAT
GCGATATGTCCGAAGCAGGAAGTGCGTGAAGTGTGGGTTGAAGCAACCCA
GCTTCGGGAAGGAGGATGGCAGCCCCACTCACTGTAGAGACTGCAAGATG
GCAGATATGCGAGATGTTTCAAACAAGAAGTGTGAGAAATGTGAAAGAAA
GATACCCATATTTGGGACGGAGGACAGCAGGCCGACCCACTGCGGCGACT
GCAAGCTGGCAGACATGCTAGATGTACGCAGAAAGTGTCCGCAT
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Coding sequence (CDS) from alignment at Contig_38:713692..714435-

>mRNA_9326 ID=mRNA_9326|Name=jgi.p|Trimin1|146722|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=744bp|location=Sequence derived from alignment at Contig_38:713692..714435- (Tribonema minus UTEX_B_3156 )
AAGGCGCCGTCCTACAACGTCCCTGGGGTAGGAGCACAGTGGTGCTCGGA
TCACAAGACTGGAGACATGCAAGATGTTGCACACAAGATGTGCCAGGGGT
GTGGACTAAAGATACCCATCTTCGGGATCGAGGACGGCAGCCCCACCCAC
TGCGGTGACTGCAAGACGGAAGATATGCAAGATGTTTACAACAATAAGTG
CGTGCAGTGCAGTCTCAAGCAACCAAACTTTGGGACAGAGGATGGAAGTC
CCACCCACTGCGGCGACTGCAAGACCGCAGACATGCGGGATGTCCGAAGC
AGGATGTGCAAGGGGTGCAGTCTAAAGCGACCAAGCTTTGAAACGGAGGA
GGGCCACCCCACCCACTGCGGTGACTGCAAGACGGCAGACATGCGAGATG
TCCGAAGCAGGAAGTGCAGGGGGTGTGAAGTAAAGACACCCACCTTTGGG
ACGGAGGATGGAAGTCCCACCCACTGCGGTGACTGCAAGACGGCAGACAT
GCGATATGTCCGAAGCAGGAAGTGCGTGAAGTGTGGGTTGAAGCAACCCA
GCTTCGGGAAGGAGGATGGCAGCCCCACTCACTGTAGAGACTGCAAGATG
GCAGATATGCGAGATGTTTCAAACAAGAAGTGTGAGAAATGTGAAAGAAA
GATACCCATATTTGGGACGGAGGACAGCAGGCCGACCCACTGCGGCGACT
GCAAGCTGGCAGACATGCTAGATGTACGCAGAAAGTGTCCGCAT
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