mRNA_9178 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|349211
Unique NamemRNA_9178
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|349211 vs. uniprot
Match: A0A835Z1W8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1W8_9STRA)

HSP 1 Score: 314 bits (804), Expect = 7.940e-103
Identity = 274/274 (100.00%), Postives = 274/274 (100.00%), Query Frame = 1 
Query:   76 MESRKAKLAALKARRAAAVEESASIGEAVPVEAAGGELLPQQRMGSSGMKRRSPDDLHSNGGQPGHPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMPPPHQHWQPPPQXXXXXXXQLLFDAQPLPAGAAPRQATTPQERERQRVRLLNSVEQMKQGKQQQPFAQQNPQHWQXXXXXXXXXXXXXXHSQGEGHYGPPGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNPGHQLGTFLPSFIEDPWAPLARQQRA 897
            MESRKAKLAALKARRAAAVEESASIGEAVPVEAAGGELLPQQRMGSSGMKRRSPDDLHSNGGQPGHPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMPPPHQHWQPPPQXXXXXXXQLLFDAQPLPAGAAPRQATTPQERERQRVRLLNSVEQMKQGKQQQPFAQQNPQHWQXXXXXXXXXXXXXXHSQGEGHYGPPGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNPGHQLGTFLPSFIEDPWAPLARQQRA
Sbjct:    1 MESRKAKLAALKARRAAAVEESASIGEAVPVEAAGGELLPQQRMGSSGMKRRSPDDLHSNGGQPGHPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMPPPHQHWQPPPQXXXXXXXQLLFDAQPLPAGAAPRQATTPQERERQRVRLLNSVEQMKQGKQQQPFAQQNPQHWQXXXXXXXXXXXXXXHSQGEGHYGPPGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNPGHQLGTFLPSFIEDPWAPLARQQRA 274
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|349211 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z1W8_9STRA7.940e-103100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_39contigContig_39:151113..152782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|349211|estExt_Genemark1.C_Ctg_390018
Hectar predicted targeting categoryother localisation
TranscriptId349533
TrackFilteredModels1
ProteinId349211
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349211gene_9178Tribonema minus UTEX_B_3156 geneContig_39 151113..152782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|349211Trimin1|349211|estExt_Genemark1.C_Ctg_390018Tribonema minus UTEX_B_3156 polypeptideContig_39 151377..152707 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9178_3exon_9178_3Tribonema minus UTEX_B_3156 exonContig_39 151113..152016 -
exon_9178_2exon_9178_2Tribonema minus UTEX_B_3156 exonContig_39 152463..152544 -
exon_9178_1exon_9178_1Tribonema minus UTEX_B_3156 exonContig_39 152605..152782 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_9178UTR3_9178Tribonema minus UTEX_B_3156 three_prime_UTRContig_39 151113..151376 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9178CDS_9178Tribonema minus UTEX_B_3156 CDSContig_39 152605..152707 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_9178UTR5_9178Tribonema minus UTEX_B_3156 five_prime_UTRContig_39 152708..152782 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9178 ID=mRNA_9178|Name=jgi.p|Trimin1|349211|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1164bp|location=Sequence derived from alignment at Contig_39:151113..152782- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGGGTAGTAATCTGGCCGCAGTAGCAACCGACCTAGCGACAGAGAAGCGG
CGCAGCGCAGCGCAGTAGGCCAGGCATGGAATCTCGTAAGGCGAAGCTGG
CCGCTCTGAAGGCCAGAAGAGCTGCAGCCGTGGAGGAATCGGCGAGCATC
GGTGAGGCAGTGCCTGTTGAAGCAGCAGGCGGAGAGCTGTTGCCTCAGCA
GCGCATGGGCAGCTCAGGCATGAAGCGACGCAGCCCTGACGACTTGCACA
GCAATGGCGGCCAACCCGGCCACCCGCAGCAGCAGGAGCAGTGGCAGGCG
TGGCCTCCGCAGCAGCAGCACCAGCAGCAGCAGCACCAGCAGCAGCAGCA
GCAGTGGCAGCAGCACCAGCCGCACTCAATGCCGCCGCCCCACCAACACT
GGCAGCCGCCGCCGCAGCCGCCGCCGCAGCCGCCGCCGCAGCTGCTATTC
GATGCGCAGCCGCTGCCAGCGGGCGCAGCGCCGCGACAGGCGACGACGCC
GCAGGAGAGGGAGCGGCAGCGCGTGCGGCTGCTGAACTCGGTGGAGCAGA
TGAAGCAGGGGAAGCAACAGCAGCCCTTTGCGCAGCAGAATCCGCAGCAC
TGGCAGCAGCAGCAGCCGCCGCCGCGACCGCCACCACAGCAGCAGCAGCA
CAGCCAGGGGGAGGGGCACTATGGCCCCCCCGGACGGGGGGGGAGAGGGC
CCCCGGGACGGGGGGGTGGGGGGCCCCCCGGGCGAGGGGGCGGGCGCGCT
CAGGGGGACAGAGGACGGGGGCGAGGGGGTGGCAGGGGGCAGGGGAGGGC
GGGCGGGCGGGGCTCAAATCCTGGACACCAGCTCGGCACCTTTCTTCCGT
CGTTTATCGAGGATCCGTGGGCGCCGCTTGCCAGGCAGCAGAGAGCTTGA
GGCGCGGCACCATGGCGGAGCGCTGCTTTGCGATGGAGTGGGCACGCATT
GAGTGTACACACATGTGTGTTGCCACGAGGCTGTGCAAGCGCCTGCGAGG
CTGTACGCTGTGTAGGTATTCGTATTCCCCGCAGAGTAGACTGGGGGAGT
GTGGGTATGTGCCGTCTTTGCACGTGGGTGTTGAACTTGATGTTGACAGC
AGCACCAGGCACTCACGTTCTCTTAAATGTACACATGTGCAGCTCCTGAA
GCTGTGAATGCGGC
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protein sequence of jgi.p|Trimin1|349211

>Trimin1|349211|estExt_Genemark1.C_Ctg_390018 ID=Trimin1|349211|estExt_Genemark1.C_Ctg_390018|Name=jgi.p|Trimin1|349211|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=275bp
MESRKAKLAALKARRAAAVEESASIGEAVPVEAAGGELLPQQRMGSSGMK
RRSPDDLHSNGGQPGHPQQQEQWQAWPPQQQHQQQQHQQQQQQWQQHQPH
SMPPPHQHWQPPPQPPPQPPPQLLFDAQPLPAGAAPRQATTPQERERQRV
RLLNSVEQMKQGKQQQPFAQQNPQHWQQQQPPPRPPPQQQQHSQGEGHYG
PPGRGGRGPPGRGGGGPPGRGGGRAQGDRGRGRGGGRGQGRAGGRGSNPG
HQLGTFLPSFIEDPWAPLARQQRA*
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mRNA from alignment at Contig_39:151113..152782-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9178 ID=mRNA_9178|Name=jgi.p|Trimin1|349211|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1670bp|location=Sequence derived from alignment at Contig_39:151113..152782- (Tribonema minus UTEX_B_3156 )
GGGGTAGTAATCTGGCCGCAGTAGCAACCGACCTAGCGACAGAGAAGCGG
CGCAGCGCAGCGCAGTAGGCCAGGCATGGAATCTCGTAAGGCGAAGCTGG
CCGCTCTGAAGGCCAGAAGAGCTGCAGCCGTGGAGGAATCGGCGAGCATC
GGTGAGGCAGTGCCTGTTGAAGCAGCAGCGCTGCCTGCATTCAATGACCT
TGGCGACGACATCGCTGGCGGCATTGAGCATGCAGCAGGCGGAGAGCTGT
TGCCTCAGCAGCGCATGGGCAGCTCAGGCATGAAGCGACGCAGCCCTGAC
GACTTGCACAGCAATGGCGGGTACCACCACCAGCGACAAGCCAATCACAG
CCGCCTGTCTCAGCAAGGACCACCGCCTCCGTTCCCTATGCCTCCACCCC
AGATGGGTGGCAGGCCGCTACCTGCTGTACCCCGTCGGGGGCCAGCGCCG
CAGCATCACAGGTACACTTTCACTCTTGCGTTTTGCTGTCTGTTTCTTGA
TTTGCATTCCAGTTTGTGCTTCACGGTTGAGAGAGTGATTGCGCTGCTGC
AAAGTCAACTTCGAAAGAGCGGAGTCTGTGATGGCTGCTTGAAAGCGCTA
GGGTGCAGCTACAGCTGCTATGCTTCCATCACTGCAGGCATCACCTGCTG
TGCGCTGCCCCTTATAAATCACTCGCCGTTGCAGTACAGCGTGTGGACGT
TGCATGCTTGCAACTGAGAGAACGCACTGCTAAGGCTCTGAGCGTTGCTG
CCGTGTCACGCACCAGCCAACCCGGCCACCCGCAGCAGCAGGAGCAGTGG
CAGGCGTGGCCTCCGCAGCAGCAGCACCAGCAGCAGCAGCACCAGCAGCA
GCAGCAGCAGTGGCAGCAGCACCAGCCGCACTCAATGCCGCCGCCCCACC
AACACTGGCAGCCGCCGCCGCAGCCGCCGCCGCAGCCGCCGCCGCAGCTG
CTATTCGATGCGCAGCCGCTGCCAGCGGGCGCAGCGCCGCGACAGGCGAC
GACGCCGCAGGAGAGGGAGCGGCAGCGCGTGCGGCTGCTGAACTCGGTGG
AGCAGATGAAGCAGGGGAAGCAACAGCAGCCCTTTGCGCAGCAGAATCCG
CAGCACTGGCAGCAGCAGCAGCCGCCGCCGCGACCGCCACCACAGCAGCA
GCAGCACAGCCAGGGGGAGGGGCACTATGGCCCCCCCGGACGGGGGGGGA
GAGGGCCCCCGGGACGGGGGGGTGGGGGGCCCCCCGGGCGAGGGGGCGGG
CGCGCTCAGGGGGACAGAGGACGGGGGCGAGGGGGTGGCAGGGGGCAGGG
GAGGGCGGGCGGGCGGGGCTCAAATCCTGGACACCAGCTCGGCACCTTTC
TTCCGTCGTTTATCGAGGATCCGTGGGCGCCGCTTGCCAGGCAGCAGAGA
GCTTGAGGCGCGGCACCATGGCGGAGCGCTGCTTTGCGATGGAGTGGGCA
CGCATTGAGTGTACACACATGTGTGTTGCCACGAGGCTGTGCAAGCGCCT
GCGAGGCTGTACGCTGTGTAGGTATTCGTATTCCCCGCAGAGTAGACTGG
GGGAGTGTGGGTATGTGCCGTCTTTGCACGTGGGTGTTGAACTTGATGTT
GACAGCAGCACCAGGCACTCACGTTCTCTTAAATGTACACATGTGCAGCT
CCTGAAGCTGTGAATGCGGC
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Coding sequence (CDS) from alignment at Contig_39:151113..152782-

>mRNA_9178 ID=mRNA_9178|Name=jgi.p|Trimin1|349211|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=825bp|location=Sequence derived from alignment at Contig_39:151113..152782- (Tribonema minus UTEX_B_3156 )
ATGGAATCTCGTAAGGCGAAGCTGGCCGCTCTGAAGGCCAGAAGAGCTGC
AGCCGTGGAGGAATCGGCGAGCATCGGTGAGGCAGTGCCTGTTGAAGCAG
CAGGCGGAGAGCTGTTGCCTCAGCAGCGCATGGGCAGCTCAGGCATGAAG
CGACGCAGCCCTGACGACTTGCACAGCAATGGCGGCCAACCCGGCCACCC
GCAGCAGCAGGAGCAGTGGCAGGCGTGGCCTCCGCAGCAGCAGCACCAGC
AGCAGCAGCACCAGCAGCAGCAGCAGCAGTGGCAGCAGCACCAGCCGCAC
TCAATGCCGCCGCCCCACCAACACTGGCAGCCGCCGCCGCAGCCGCCGCC
GCAGCCGCCGCCGCAGCTGCTATTCGATGCGCAGCCGCTGCCAGCGGGCG
CAGCGCCGCGACAGGCGACGACGCCGCAGGAGAGGGAGCGGCAGCGCGTG
CGGCTGCTGAACTCGGTGGAGCAGATGAAGCAGGGGAAGCAACAGCAGCC
CTTTGCGCAGCAGAATCCGCAGCACTGGCAGCAGCAGCAGCCGCCGCCGC
GACCGCCACCACAGCAGCAGCAGCACAGCCAGGGGGAGGGGCACTATGGC
CCCCCCGGACGGGGGGGGAGAGGGCCCCCGGGACGGGGGGGTGGGGGGCC
CCCCGGGCGAGGGGGCGGGCGCGCTCAGGGGGACAGAGGACGGGGGCGAG
GGGGTGGCAGGGGGCAGGGGAGGGCGGGCGGGCGGGGCTCAAATCCTGGA
CACCAGCTCGGCACCTTTCTTCCGTCGTTTATCGAGGATCCGTGGGCGCC
GCTTGCCAGGCAGCAGAGAGCTTGA
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