mRNA_9142 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|149078
Unique Name	mRNA_9142
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|149078 vs. uniprot
Match: A0A835YSV9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSV9_9STRA)

HSP 1 Score: 240 bits (612), Expect = 2.900e-70
Identity = 366/366 (100.00%), Postives = 366/366 (100.00%), Query Frame = 1

Query:    1 AALTTVNLTGCAQLVQLPDSIGRLPMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRLQEVPEISNLIHLTTLDCKDCDQLTALNKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLETWRGNCGSLTKLAALRFEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGKEFMAPQSEPAVMCSDVNLRFLFCMRHHLLYTLPNLATVVSFRVAAVKVVGGLMRLATLDLSGCTHLETLSDKIGRLA 1098
            AALTTVNLTGCAQLVQLPDSIGRLPMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRLQEVPEISNLIHLTTLDCKDCDQLTALNKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLETWRGNCGSLTKLAALRFEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGKEFMAPQSEPAVMCSDVNLRFLFCMRHHLLYTLPNLATVVSFRVAAVKVVGGLMRLATLDLSGCTHLETLSDKIGRLA
Sbjct:    1 AALTTVNLTGCAQLVQLPDSIGRLPMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRLQEVPEISNLIHLTTLDCKDCDQLTALNKLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLETWRGNCGSLTKLAALRFEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGKEFMAPQSEPAVMCSDVNLRFLFCMRHHLLYTLPNLATVVSFRVAAVKVVGGLMRLATLDLSGCTHLETLSDKIGRLA 366

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|149078 vs. uniprot

BLAST of jgi.p|Trimin1|149078 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YSV9_9STRA	2.900e-70	100.00	Uncharacterized protein (Fragment) n=1 Tax=Tribone...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_44	contig	Contig_44:905769..909019 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|149078\|gw1.44.68.1
Hectar predicted targeting category	other localisation
TranscriptId	149400
Track	FilteredModels1
ProteinId	149078

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|149078	gene_9142	Tribonema minus UTEX_B_3156	gene	Contig_44 905769..909019 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|149078	Trimin1\|149078\|gw1.44.68.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_44 905769..909019 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_9142_4	exon_9142_4	Tribonema minus UTEX_B_3156	exon	Contig_44 905769..906240 -
exon_9142_3	exon_9142_3	Tribonema minus UTEX_B_3156	exon	Contig_44 907814..908236 -
exon_9142_2	exon_9142_2	Tribonema minus UTEX_B_3156	exon	Contig_44 908335..908529 -
exon_9142_1	exon_9142_1	Tribonema minus UTEX_B_3156	exon	Contig_44 908688..909019 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_9142	CDS_9142	Tribonema minus UTEX_B_3156	CDS	Contig_44 908688..909019 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_44:905769..909019-
coding sequence from alignment at Contig_44:905769..909019-

spliced messenger RNA

>mRNA_9142 ID=mRNA_9142|Name=jgi.p|Trimin1|149078|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1422bp|location=Sequence derived from alignment at Contig_44:905769..909019- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGGCCCTAACGACGGTGAATCTGACTGGCTGCGCCCAGCTGGTGCAGCT
ACCGGACAGCATCGGCAGGCTTCCTATGCTGACGACGATGGATTTGAGAG
ACTGCAAGAGCCTCACCGGCCTTCCACCGACCATCGCCAATTTGAAGAAG
CTGACGACGCTCCGCCTCATCAGGTGTGAGAGCATCACGGGACTGCCGGG
TGGCATCAATGATCTGGAGCAGCTGCAAGTTCTGGATCTGGAGGGATGCA
GACGCCTCCAGGAAGTACCTGAGATCAGCAATCTGATACATCTCACGACG
CTCGACTGCAAGGACTGTGACCAGCTGACTGCGCTCAACAAACTGCCGGC
CGAGATGGGCGGTTTGAGTGCGTTGCGACTCCTGGATCTTGAGGGATGCG
CATCCCTACAAGCCCTGCCGGATATCAGCAATCTGGTTGAACTGGAGACG
TTCGACTGCAAGAATTGTGAGCGGCTGGAGACTTGGCGCGGCAACTGTGG
CAGCCTGACTAAACTCGCTGCTCTAAGGTTTGAAGGATGCAGGATGCTCG
GGAGCCTGCCGGCCGACACAGGCAAATTGACTGCCCTGCGAATACTGGAT
CTTGAGGGATGCGGGCGGCTCATCTCCCTACCAGAATCACTTGGTGATTT
AACGAAGTTGAAGATTCTGCACCTTAAGGGATGCACGCGGCTCACAGGCC
TTCCGGACTCTATTGGCAAGCTCGGAAAGCTGGAAAAGCTTGTCCTCATG
GGATGCCCCTCCCTGAAGCGTCTGCCAGACACCATCTATGGTTTGACGGC
ACTGACAACGCTGGACTGTGAGGGATGTGCGCACCTTACAGCCCTGCCAG
ACACAATCTCTGGCAAAGAGTTCATGGCACCACAAAGTGAGCCTGCCGTT
ATGTGCAGTGATGTAAACTTAAGGTTTTTGTTTTGTATGAGGCACCATCT
GCTCTACACATTGCCCAATCTCGCGACCGTGGTGTCCTTCCGTGTTGCAG
CGGTGAAGGTTGTAGGAGGCCTGATGCGACTGGCAACGCTGGACCTCAGT
GGATGCACGCACCTCGAGACGCTGTCAGACAAAATCGGCAGGCTGGCAGA
TCTAACTCATCTCCGCCTAAACGATTGTGTCAGCTTGAAGAGCCTACCAG
ACACCATGTGCGACCTGAGGGAGCTGAGGATCCTCGACCTGACAGGGTGC
TTCAGCCTCGGGAGTCTGCCGAACAACATCGGCAACCTGAAATCCCTGAG
GATCCTCCGCCTCGCTGGCTGTGTCAGTCTCACAGCCCTTCCAGACTCCA
TCTGCGACTTGGACGCACTGGAGCAACTGGACTTGGAGGCGTGCATACAC
CTCCAGACGCTGCCGGACAAACGCAACCTAGCGGCGCAGGACCTGCGACG
ATGTGAGGGCCTGAGCAGGCTG

protein sequence of jgi.p|Trimin1|149078

>Trimin1|149078|gw1.44.68.1 ID=Trimin1|149078|gw1.44.68.1|Name=jgi.p|Trimin1|149078|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=474bp
AALTTVNLTGCAQLVQLPDSIGRLPMLTTMDLRDCKSLTGLPPTIANLKK
LTTLRLIRCESITGLPGGINDLEQLQVLDLEGCRRLQEVPEISNLIHLTT
LDCKDCDQLTALNKLPAEMGGLSALRLLDLEGCASLQALPDISNLVELET
FDCKNCERLETWRGNCGSLTKLAALRFEGCRMLGSLPADTGKLTALRILD
LEGCGRLISLPESLGDLTKLKILHLKGCTRLTGLPDSIGKLGKLEKLVLM
GCPSLKRLPDTIYGLTALTTLDCEGCAHLTALPDTISGKEFMAPQSEPAV
MCSDVNLRFLFCMRHHLLYTLPNLATVVSFRVAAVKVVGGLMRLATLDLS
GCTHLETLSDKIGRLADLTHLRLNDCVSLKSLPDTMCDLRELRILDLTGC
FSLGSLPNNIGNLKSLRILRLAGCVSLTALPDSICDLDALEQLDLEACIH
LQTLPDKRNLAAQDLRRCEGLSRL

mRNA from alignment at Contig_44:905769..909019-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9142 ID=mRNA_9142|Name=jgi.p|Trimin1|149078|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3251bp|location=Sequence derived from alignment at Contig_44:905769..909019- (Tribonema minus UTEX_B_3156 )
GCGGCCCTAACGACGGTGAATCTGACTGGCTGCGCCCAGCTGGTGCAGCT
ACCGGACAGCATCGGCAGGCTTCCTATGCTGACGACGATGGATTTGAGAG
ACTGCAAGAGCCTCACCGGCCTTCCACCGACCATCGCCAATTTGAAGAAG
CTGACGACGCTCCGCCTCATCAGGTGTGAGAGCATCACGGGACTGCCGGG
TGGCATCAATGATCTGGAGCAGCTGCAAGTTCTGGATCTGGAGGGATGCA
GACGCCTCCAGGAAGTACCTGAGATCAGCAATCTGATACATCTCACGACG
CTCGACTGCAAGGACTGTGACCAGCTGACTGCGTTCCACGGACCCGTTGG
CGGCCTGAAACGGCTTGCTACTCTCAGGCAAGGCGTGTAGGCGTTCAGAG
TGCCTGACATGTGTATAAAATCACATTAGTGCCTTGCTCACCACTGAGTC
TGCTCAAACGTCATCAATGCAGGCTGCTGGCATGTGGGAGGCTCAACAAA
CTGCCGGCCGAGATGGGCGGTTTGAGTGCGTTGCGACTCCTGGATCTTGA
GGGATGCGCATCCCTACAAGCCCTGCCGGATATCAGCAATCTGGTTGAAC
TGGAGACGTTCGACTGCAAGAATTGTGAGCGGCTGGAGACTTGGCGCGGC
AACTGTGGCAGCCTGACTAAACTCGCTGCTCTAAGGTGAAGTGTCGCGCA
TGTTCATACAAGGTGTGCCGCACCACATGGTTTCCCCTGCTCAACACTGA
CGTCTGCTCCAAATTTCACTGACGCACTGGCAGGTTTGAAGGATGCAGGA
TGCTCGGGAGCCTGCCGGCCGACACAGGCAAATTGACTGCCCTGCGAATA
CTGGATCTTGAGGGATGCGGGCGGCTCATCTCCCTACCAGAATCACTTGG
TGATTTAACGAAGTTGAAGATTCTGCACCTTAAGGGATGCACGCGGCTCA
CAGGCCTTCCGGACTCTATTGGCAAGCTCGGAAAGCTGGAAAAGCTTGTC
CTCATGGGATGCCCCTCCCTGAAGCGTCTGCCAGACACCATCTATGGTTT
GACGGCACTGACAACGCTGGACTGTGAGGGATGTGCGCACCTTACAGCCC
TGCCAGACACAATCTCTGGCAAAGAGTTCATGGCACCACAAAGTGAGCCT
GCCGTTATGTGCAGTGATGTAAACTTAAGGTTTTTGTTTTGTATGAGGCA
CCATCTGTGTGGGTCATTTGGCTTCATTTGTCGATTGCAAATGCCACGCT
GTGCAATGTTCATACTCTCTATGTGAGACACCTCCACATCGTTAGACAGG
CTAGTTATGAGGGTCGGCTGAGAAAATACTGCTGCGCAATACATGCAAAT
TGACAGCGACCTTAAGCTTACGTCACTGGTTATGTGCGGTGTACTCCTGT
AGTGCCCTGCATGGGTGCCTGCAGTGCTCGGCTCCCTAACGCCTTCCTGC
CGATCTGTCTCCTGTTGGTTCAGCACCGATCGATGCGGACATCATCAGTC
GGATCACGTCGCCCGTGACACCGCCGGACGGGAACCGTTGCAGCAGGGTG
GAGGCAGGACAAGGTGAGCCTGTAATCGTGCACCGCCAAGCACCCCGCAT
GATGCCAGCGGAGTGCGGCGTCGGACTGAATTTTGCACAGCGTCCGCATG
ATGCCAGCAGTCTGAGAGTGCCGCGTCAGAGTGAAATTTGCACAGCGCGG
GTATCGCAGACATTGCTGCTGACCAGTAAACACTGTTGTTTTCTGCGTTG
CATCAGTGCCAATCGGTGCCGTCCGTCGACTGGTACTGGACCTCAAGGGT
GGCAAGCACCTGCCAGACACAAACAGCTATTGCAAGGAGTTGGCGCCAGT
GGCTACTGTCGGCGATGGACGCAACACTGAGCCCAGGGGGAACAGCGGTG
CAGAAGAATGTGAGCCATTGTTTGCCGCGCCCATGATCATCAACGACGTC
AACTTAGCTCTCAGTCGTCATGATAATTAGGCAGCCGGCATGGGCACCAC
CATGATGAACATTGCCAGAATGACGACAGCATGTATGCCAGGATCAAATG
ACACGCTTCGGCGGATCAGCGCTCTGTTGGATCAAATCTGAGTGAGTTCT
CGTGCCAGCGCTGGTCTGCGTGCTCCCCACAGCGCCTGGGTGGCGAGGCC
TCCATCGCGGACAATGTGGTTCATGGCTCTCTTGTACGCGACAGCCGACC
ACAGTGCAGAGGAGATGGTTGTGGTAGACACTTTGGGCTTGCTCAAGATC
TGCTTTGCCAGAGACAGTCGACATGACGCATGAGCCGAGCAACATTGATA
ATAATCATCGATAACATGACTGCAATTGCATCTGCCAAACAGTATCGGTC
ACGGTCCTAATGTGGAATTAGGTCACAGTCGAGCTTCAAGTGTGAAATTT
GCAAGGTACTACAGTATCAAACACTAAATGTGTTGCTCACAGTGCAAATT
TGCGCCGCTGCAACTGTCAGGGTAAGCTTCAAGATTATTCTGCTGTATGA
TTTTCGTGCAGCAACCATTGCTGCTGATCGACCCGCTTTGTCTCTATCTT
GTTTCAGTTTCTGCCAACGCGGAGATCAGCGGTCGACTGACACTGGATGT
TGCGAGTCAGAAACATGAGGGGCAAGGTGAGCCTACTGCATTGTGCGCGA
TGCACCTTTTAATAGCGCCGTGCCTAAACCTACGTGGTGTCCTCTGTTTC
ATGTGATCCATTCGACAAGGCTATTTTGTGATGTGTGCCTTCACGGCAAG
CCTGCCTGATGCTTGTACCGTAAGGTAAGGCTCTACACATTGCCCAATCT
CGCGACCGTGGTGTCCTTCCGTGTTGCAGCGGTGAAGGTTGTAGGAGGCC
TGATGCGACTGGCAACGCTGGACCTCAGTGGATGCACGCACCTCGAGACG
CTGTCAGACAAAATCGGCAGGCTGGCAGATCTAACTCATCTCCGCCTAAA
CGATTGTGTCAGCTTGAAGAGCCTACCAGACACCATGTGCGACCTGAGGG
AGCTGAGGATCCTCGACCTGACAGGGTGCTTCAGCCTCGGGAGTCTGCCG
AACAACATCGGCAACCTGAAATCCCTGAGGATCCTCCGCCTCGCTGGCTG
TGTCAGTCTCACAGCCCTTCCAGACTCCATCTGCGACTTGGACGCACTGG
AGCAACTGGACTTGGAGGCGTGCATACACCTCCAGACGCTGCCGGACAAA
CGCAACCTAGCGGCGCAGGACCTGCGACGATGTGAGGGCCTGAGCAGGCT
G

Coding sequence (CDS) from alignment at Contig_44:905769..909019-

>mRNA_9142 ID=mRNA_9142|Name=jgi.p|Trimin1|149078|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1422bp|location=Sequence derived from alignment at Contig_44:905769..909019- (Tribonema minus UTEX_B_3156 )
GCGGCCCTAACGACGGTGAATCTGACTGGCTGCGCCCAGCTGGTGCAGCT
ACCGGACAGCATCGGCAGGCTTCCTATGCTGACGACGATGGATTTGAGAG
ACTGCAAGAGCCTCACCGGCCTTCCACCGACCATCGCCAATTTGAAGAAG
CTGACGACGCTCCGCCTCATCAGGTGTGAGAGCATCACGGGACTGCCGGG
TGGCATCAATGATCTGGAGCAGCTGCAAGTTCTGGATCTGGAGGGATGCA
GACGCCTCCAGGAAGTACCTGAGATCAGCAATCTGATACATCTCACGACG
CTCGACTGCAAGGACTGTGACCAGCTGACTGCGCTCAACAAACTGCCGGC
CGAGATGGGCGGTTTGAGTGCGTTGCGACTCCTGGATCTTGAGGGATGCG
CATCCCTACAAGCCCTGCCGGATATCAGCAATCTGGTTGAACTGGAGACG
TTCGACTGCAAGAATTGTGAGCGGCTGGAGACTTGGCGCGGCAACTGTGG
CAGCCTGACTAAACTCGCTGCTCTAAGGTTTGAAGGATGCAGGATGCTCG
GGAGCCTGCCGGCCGACACAGGCAAATTGACTGCCCTGCGAATACTGGAT
CTTGAGGGATGCGGGCGGCTCATCTCCCTACCAGAATCACTTGGTGATTT
AACGAAGTTGAAGATTCTGCACCTTAAGGGATGCACGCGGCTCACAGGCC
TTCCGGACTCTATTGGCAAGCTCGGAAAGCTGGAAAAGCTTGTCCTCATG
GGATGCCCCTCCCTGAAGCGTCTGCCAGACACCATCTATGGTTTGACGGC
ACTGACAACGCTGGACTGTGAGGGATGTGCGCACCTTACAGCCCTGCCAG
ACACAATCTCTGGCAAAGAGTTCATGGCACCACAAAGTGAGCCTGCCGTT
ATGTGCAGTGATGTAAACTTAAGGTTTTTGTTTTGTATGAGGCACCATCT
GCTCTACACATTGCCCAATCTCGCGACCGTGGTGTCCTTCCGTGTTGCAG
CGGTGAAGGTTGTAGGAGGCCTGATGCGACTGGCAACGCTGGACCTCAGT
GGATGCACGCACCTCGAGACGCTGTCAGACAAAATCGGCAGGCTGGCAGA
TCTAACTCATCTCCGCCTAAACGATTGTGTCAGCTTGAAGAGCCTACCAG
ACACCATGTGCGACCTGAGGGAGCTGAGGATCCTCGACCTGACAGGGTGC
TTCAGCCTCGGGAGTCTGCCGAACAACATCGGCAACCTGAAATCCCTGAG
GATCCTCCGCCTCGCTGGCTGTGTCAGTCTCACAGCCCTTCCAGACTCCA
TCTGCGACTTGGACGCACTGGAGCAACTGGACTTGGAGGCGTGCATACAC
CTCCAGACGCTGCCGGACAAACGCAACCTAGCGGCGCAGGACCTGCGACG
ATGTGAGGGCCTGAGCAGGCTG