mRNA_9110 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|166493
Unique NamemRNA_9110
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|166493 vs. uniprot
Match: A0A835YW44_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW44_9STRA)

HSP 1 Score: 222 bits (566), Expect = 2.310e-70
Identity = 212/212 (100.00%), Postives = 212/212 (100.00%), Query Frame = 1 
Query:    1 TPEGLKQAAASGHLDVVEWLAQHRQEGASKSAMDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVQCAAHGEIDAXXXXXXXXXXXXXXXLLDHGYGGQKSLELAMRFAAANGHVRIVEFLHKQGENIPPQKQVESVARVVGTSRRPSFQGAPLPRLCSVCSSHPHN 636
            TPEGLKQAAASGHLDVVEWLAQHRQEGASKSAMDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVQCAAHGEIDAXXXXXXXXXXXXXXXLLDHGYGGQKSLELAMRFAAANGHVRIVEFLHKQGENIPPQKQVESVARVVGTSRRPSFQGAPLPRLCSVCSSHPHN
Sbjct:    1 TPEGLKQAAASGHLDVVEWLAQHRQEGASKSAMDAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVQCAAHGEIDAXXXXXXXXXXXXXXXLLDHGYGGQKSLELAMRFAAANGHVRIVEFLHKQGENIPPQKQVESVARVVGTSRRPSFQGAPLPRLCSVCSSHPHN 212
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|166493 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YW44_9STRA2.310e-70100.00Ankyrin repeat-containing domain protein (Fragment... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_44contigContig_44:700354..701222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|166493|e_gw1.44.28.1
Hectar predicted targeting categoryother localisation
TranscriptId166815
TrackFilteredModels1
ProteinId166493
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166493gene_9110Tribonema minus UTEX_B_3156 geneContig_44 700354..701222 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|166493Trimin1|166493|e_gw1.44.28.1Tribonema minus UTEX_B_3156 polypeptideContig_44 700354..701222 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9110_3exon_9110_3Tribonema minus UTEX_B_3156 exonContig_44 700354..700822 -
exon_9110_2exon_9110_2Tribonema minus UTEX_B_3156 exonContig_44 700969..701067 -
exon_9110_1exon_9110_1Tribonema minus UTEX_B_3156 exonContig_44 701152..701222 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9110CDS_9110Tribonema minus UTEX_B_3156 CDSContig_44 701152..701222 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9110 ID=mRNA_9110|Name=jgi.p|Trimin1|166493|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=639bp|location=Sequence derived from alignment at Contig_44:700354..701222- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACGCCGGAAGGCCTTAAACAAGCCGCTGCATCGGGCCATCTGGACGTCGT
GGAGTGGCTTGCGCAGCACAGGCAAGAAGGGGCCTCCAAGAGTGCCATGG
ACGCAGCTGCTGAACATGGGCACCTGGCGGTGGTCAAGTGGTTGCATGAA
AACCGGACGGAAGGCTGCAGCACTGCTGCTATGGACCTGGCAGCCGCCAA
CAACCACCTGGAAGTCCTTCAATGGCTGCATAACAACCGAAAAGAGGGCT
GCACTTCGGATGCCTTCCACTTTGCGGCCATCTATGGGCATTTGCAAATA
ATTCAGTGGTTGCATCACAACAACCTGGTGCAGTGCGCGGCTCATGGTGA
AATAGATGCCTTGGAGCTAGCTGCTGAGCATGGCCATCTCACAGTGGTGC
AGTGGTTGCTGGACCATGGCTACGGCGGGCAAAAGTCTCTTGAACTGGCA
ATGCGGTTTGCAGCTGCCAACGGGCACGTGCGCATTGTGGAGTTCCTGCA
TAAGCAAGGTGAGAACATACCCCCACAAAAGCAAGTAGAGTCAGTGGCTA
GGGTGGTGGGCACATCCCGTCGACCCAGTTTTCAGGGTGCTCCACTCCCC
AGACTGTGCTCAGTATGTAGCTCACATCCTCACAATTGA
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protein sequence of jgi.p|Trimin1|166493

>Trimin1|166493|e_gw1.44.28.1 ID=Trimin1|166493|e_gw1.44.28.1|Name=jgi.p|Trimin1|166493|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=213bp
TPEGLKQAAASGHLDVVEWLAQHRQEGASKSAMDAAAEHGHLAVVKWLHE
NRTEGCSTAAMDLAAANNHLEVLQWLHNNRKEGCTSDAFHFAAIYGHLQI
IQWLHHNNLVQCAAHGEIDALELAAEHGHLTVVQWLLDHGYGGQKSLELA
MRFAAANGHVRIVEFLHKQGENIPPQKQVESVARVVGTSRRPSFQGAPLP
RLCSVCSSHPHN*
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mRNA from alignment at Contig_44:700354..701222-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9110 ID=mRNA_9110|Name=jgi.p|Trimin1|166493|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=869bp|location=Sequence derived from alignment at Contig_44:700354..701222- (Tribonema minus UTEX_B_3156 )
ACGCCGGAAGGCCTTAAACAAGCCGCTGCATCGGGCCATCTGGACGTCGT
GGAGTGGCTTGCGCAGCACAGGTACGCAATTTAAAACATTGTGCAGCACA
AACTAAATCGACTCCAGCTTGCTGACAGCCTTATTTCCGCTGCGTGCTTC
TTCAGGCAAGAAGGGGCCTCCAAGAGTGCCATGGACGCAGCTGCTGAACA
TGGGCACCTGGCGGTGGTCAAGTGGTTGCATGAAAACCGGACGGAAGGCT
GCAGGTAAGAATCCGCTGCACGCACACGTTTTTCCAGCATATGTGTGCGT
GTGTCAAAATAATGTGCAGTCAGACAGCATCACCAGCACAAGACCAGCAT
CCAATGTCGTCATGTCCTCCCCTTGGTGATGCTGTTTGTGTGTGCTGCAG
CACTGCTGCTATGGACCTGGCAGCCGCCAACAACCACCTGGAAGTCCTTC
AATGGCTGCATAACAACCGAAAAGAGGGCTGCACTTCGGATGCCTTCCAC
TTTGCGGCCATCTATGGGCATTTGCAAATAATTCAGTGGTTGCATCACAA
CAACCTGGTGCAGTGCGCGGCTCATGGTGAAATAGATGCCTTGGAGCTAG
CTGCTGAGCATGGCCATCTCACAGTGGTGCAGTGGTTGCTGGACCATGGC
TACGGCGGGCAAAAGTCTCTTGAACTGGCAATGCGGTTTGCAGCTGCCAA
CGGGCACGTGCGCATTGTGGAGTTCCTGCATAAGCAAGGTGAGAACATAC
CCCCACAAAAGCAAGTAGAGTCAGTGGCTAGGGTGGTGGGCACATCCCGT
CGACCCAGTTTTCAGGGTGCTCCACTCCCCAGACTGTGCTCAGTATGTAG
CTCACATCCTCACAATTGA
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Coding sequence (CDS) from alignment at Contig_44:700354..701222-

>mRNA_9110 ID=mRNA_9110|Name=jgi.p|Trimin1|166493|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=639bp|location=Sequence derived from alignment at Contig_44:700354..701222- (Tribonema minus UTEX_B_3156 )
ACGCCGGAAGGCCTTAAACAAGCCGCTGCATCGGGCCATCTGGACGTCGT
GGAGTGGCTTGCGCAGCACAGGCAAGAAGGGGCCTCCAAGAGTGCCATGG
ACGCAGCTGCTGAACATGGGCACCTGGCGGTGGTCAAGTGGTTGCATGAA
AACCGGACGGAAGGCTGCAGCACTGCTGCTATGGACCTGGCAGCCGCCAA
CAACCACCTGGAAGTCCTTCAATGGCTGCATAACAACCGAAAAGAGGGCT
GCACTTCGGATGCCTTCCACTTTGCGGCCATCTATGGGCATTTGCAAATA
ATTCAGTGGTTGCATCACAACAACCTGGTGCAGTGCGCGGCTCATGGTGA
AATAGATGCCTTGGAGCTAGCTGCTGAGCATGGCCATCTCACAGTGGTGC
AGTGGTTGCTGGACCATGGCTACGGCGGGCAAAAGTCTCTTGAACTGGCA
ATGCGGTTTGCAGCTGCCAACGGGCACGTGCGCATTGTGGAGTTCCTGCA
TAAGCAAGGTGAGAACATACCCCCACAAAAGCAAGTAGAGTCAGTGGCTA
GGGTGGTGGGCACATCCCGTCGACCCAGTTTTCAGGGTGCTCCACTCCCC
AGACTGTGCTCAGTATGTAGCTCACATCCTCACAATTGA
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